View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5053-Insertion-19 (Length: 320)
Name: NF5053-Insertion-19
Description: NF5053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5053-Insertion-19 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 116; Significance: 5e-59; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 16 - 198
Target Start/End: Original strand, 5170718 - 5170899
Alignment:
| Q |
16 |
gttgatttggagaatttgaagatataagtctcatataataatattatgtaagcgttagactattttcttcttaaattaacaataactaaaattaatctgt |
115 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
5170718 |
gttgatttggagaatttgaagatataaatctcaaatattaatattatttaggcgttagactattttcttcttaaattaacaataactaaaattaatttgt |
5170817 |
T |
|
| Q |
116 |
gaaatgaannnnnnnnnaagtcacgtttattttttattgaccaattcggtctttaagatagtttcagatattgattgatacta |
198 |
Q |
| |
|
|||||||| ||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5170818 |
gaaatgaacttttttttaagtcacgtttgttttttattg-ccaattcggtctttaagatagtctcagatattgattgatacta |
5170899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 70 - 204
Target Start/End: Original strand, 5154294 - 5154428
Alignment:
| Q |
70 |
ttagactattttcttcttaaattaacaataactaaaattaatctgtgaaatgaannnnnnnnnaagtcacgtttattttttattgaccaattcggtcttt |
169 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
5154294 |
ttagactattttcttcttaaattaacaataactaaaattaatctgtgaaatgaatttttttttaagtcacgtttgttttttattgaccaattcggtcttt |
5154393 |
T |
|
| Q |
170 |
aagatagtttcagatattgattgatactaggaagt |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
5154394 |
aagatagtttcagatattgattgatactaggaagt |
5154428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 69 - 202
Target Start/End: Original strand, 5180246 - 5180380
Alignment:
| Q |
69 |
gttagactattttcttcttaaattaacaataactaaaattaatctgtgaaatgaa-nnnnnnnnnaagtcacgtttattttttattgaccaattcggtct |
167 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| || ||||||||||||||||||||||| |
|
|
| T |
5180246 |
gttagactattttcttcttaaattaacaataactgaaattaatctgtgaaatgaattttttttttaagtcaccattgttttttattgaccaattcggtct |
5180345 |
T |
|
| Q |
168 |
ttaagatagtttcagatattgattgatactaggaa |
202 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||| |
|
|
| T |
5180346 |
ttaagatagtctcagatattgattgatacaaggaa |
5180380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 5149748 - 5149816
Alignment:
| Q |
8 |
gttcaccggttgatttggagaatttgaagatataagtctcatataataatattatgtaagcgttagact |
76 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
5149748 |
gttcaccagttgatttggagaatttgaagatataagtctcatataataatattatgtaggcgttagact |
5149816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 269 - 320
Target Start/End: Original strand, 5154493 - 5154544
Alignment:
| Q |
269 |
gacaaattgagtggtttgtttttctatttcatatggctcactgtattttccc |
320 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5154493 |
gacaaattgagtggtttgtttttctatttcacatggctcactgtattttccc |
5154544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 270 - 320
Target Start/End: Original strand, 5180451 - 5180501
Alignment:
| Q |
270 |
acaaattgagtggtttgtttttctatttcatatggctcactgtattttccc |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
5180451 |
acaaattgagtggtttgtttttctatttcacatggctaactgtattttccc |
5180501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 269 - 317
Target Start/End: Complemental strand, 4844592 - 4844544
Alignment:
| Q |
269 |
gacaaattgagtggtttgtttttctatttcatatggctcactgtatttt |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
4844592 |
gacaaattgagtggtttgtttttctatttcacatggttcactgtatttt |
4844544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 269 - 317
Target Start/End: Original strand, 5170999 - 5171047
Alignment:
| Q |
269 |
gacaaattgagtggtttgtttttctatttcatatggctcactgtatttt |
317 |
Q |
| |
|
|||||| |||||||||||||||||||||||| ||| ||| |||| |||| |
|
|
| T |
5170999 |
gacaaactgagtggtttgtttttctatttcacatgactcgctgtttttt |
5171047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University