View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5053-Insertion-2 (Length: 933)
Name: NF5053-Insertion-2
Description: NF5053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5053-Insertion-2 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 847; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 847; E-Value: 0
Query Start/End: Original strand, 8 - 933
Target Start/End: Original strand, 41703757 - 41704685
Alignment:
| Q |
8 |
acatcatcttgatcacgagaaaagtctattgctttctgtgaagtcaagagctctagtaacacaactccatagctataaacatcacttttatcggttaatt |
107 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41703757 |
acatcatcttcatcacgagaaaagtctattgctttctgtgaagtcaagagctctagtaacacaactccatagctataaacatcacttttatcggttaatt |
41703856 |
T |
|
| Q |
108 |
ggtagttgcgatagtattcaggatccaagtatcctagtgttccctgagcacaggtagacacatgactaagtcccgggttagccaatctagagagtccaaa |
207 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41703857 |
ggtagttgcggtagtattcaggatccaagtatcctagtgttccctgagcacaggtagacacatgactaagtcccgggttagccaatctagagagtccaaa |
41703956 |
T |
|
| Q |
208 |
atccgaaacttttgcgtcgaattcattgtccaacagtatatttgttgacttaacatctctatggtaaataggggtgtgtgcagaagaatgcaagtaagcc |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41703957 |
atccgaaacttttgcgtcgaattcattgtccaacagtatatttgttgacttaacatctctatggtaaataggggtgtgtgcagaagaatgcaagtaagcc |
41704056 |
T |
|
| Q |
308 |
aatgcttcagctgtttgaaaagcaatcttaagccnnnnnnnccagtcaagaaaatttggatatctaccatgaatatggtcatagagggtcccatttgaga |
407 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41704057 |
aatgcttcagctgtttgaaaagcaatcttaagcctttttttccagtcaagaaaatttggatatctaccatgaatatggtcatagagggtcccatttgaga |
41704156 |
T |
|
| Q |
408 |
tatactcatagatcatcaaaggctgctcagattccacacagcaacctaagagtcttactaggttcttgtgattaacttgagaaagtattgaaacctcatt |
507 |
Q |
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| T |
41704157 |
tatactcatagatcatcaaaggctgctcagattccacacagcaacctaagagtcttactaggttcttgtgattaacttgagaaagtattgaaacctcatt |
41704256 |
T |
|
| Q |
508 |
aagcacttgttgtgtgcttttaaggttaccaactctagctttcttgacagctacaatagttccatcttgtagttcacctttgtaaacttccccaaagcca |
607 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41704257 |
aagcacttgttgtgtgcttttaaggttaccaactctagctttcttgacagctacaatagttccatcttgtagttcacctttgtaaacttccccaaagcca |
41704356 |
T |
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| Q |
608 |
ccacttcctaggatcctgtcttgtgaaaaacagtttgttgctttcttcaactctttcagttgaaacattttgtaaggtttctcccctccagtgcttgatt |
707 |
Q |
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| T |
41704357 |
ccacttcctaggatcctgtcttgtgaaaaacagtttgttgctttcttcaactctttcagttgaaacattttgtaaggtttctcccctccagtgcttgatt |
41704456 |
T |
|
| Q |
708 |
tcagcacaatttctctttccttggcctgcttctccctgtagttagagtgtttgaagggctttgtgatgatcacaagaatcacagccaatg-nnnnnnngc |
806 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |
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| T |
41704457 |
tcagcacaatttctctttccttggcctgcttctccctgtagttagagtgtttgaaggactttgtgatgatcacaagaatcacagccaatgaaaaaaaagc |
41704556 |
T |
|
| Q |
807 |
aataaccactattgagacaaccaagctggttttccatttggattctctcttgtaccttacacaggttgctgcaaaagggtcccaatggaatcctctctta |
906 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41704557 |
aataaccactattgaaacaaccaagctggttttccatttggattctctcttgtaccttacacaggttgctgcaaaagggtcccaatggaatcctctctta |
41704656 |
T |
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| Q |
907 |
c-aagac-acgaaagagtgtgtctctatc |
933 |
Q |
| |
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| T |
41704657 |
caaagacaacgaaagagtgtgtctctatc |
41704685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 8 - 138
Target Start/End: Complemental strand, 41814680 - 41814550
Alignment:
| Q |
8 |
acatcatcttgatcacgagaaaagtctattgctttctgtgaagtcaagagctctagtaacacaactccatagctataaacatcacttttatcggttaatt |
107 |
Q |
| |
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|||||||| |||||| ||||| | |||| |||||||||| ||||||| | |||||| | ||||||||||||||||||||||||||||||||||||||| | |
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| T |
41814680 |
acatcatcatgatcatgagaagaatctactgctttctgtcaagtcaaaaactctagcagcacaactccatagctataaacatcacttttatcggttaact |
41814581 |
T |
|
| Q |
108 |
ggtagttgcgatagtattcaggatccaagta |
138 |
Q |
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|| ||||||| |||| || ||||||||||| |
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| T |
41814580 |
ggcagttgcggtagtttttgggatccaagta |
41814550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 97
Target Start/End: Original strand, 44888551 - 44888589
Alignment:
| Q |
59 |
tctagtaacacaactccatagctataaacatcactttta |
97 |
Q |
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||||| || |||||||||||||||||||||||||||||| |
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| T |
44888551 |
tctagcaagacaactccatagctataaacatcactttta |
44888589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 32 - 159
Target Start/End: Complemental strand, 30910876 - 30910749
Alignment:
| Q |
32 |
tctattgctttctgtgaagtcaagagctctagtaacacaactccatagctataaacatcacttttatcggttaattggtagttgcgatagtattcaggat |
131 |
Q |
| |
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||||| || ||||| || ||||| ||||| || |||||||| || | |||||||| ||||| |||||||| ||||||||||| | ||| |||||||||| |
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| T |
30910876 |
tctatcgccttctgagacgtcaaaagctcaagcaacacaaccccgaaactataaacgtcactcttatcggtcaattggtagtttctataatattcaggat |
30910777 |
T |
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| Q |
132 |
ccaagtatcctagtgttccctgagcaca |
159 |
Q |
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| | ||| || ||||| || |||||||| |
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| T |
30910776 |
caaggtacccaagtgtcccttgagcaca |
30910749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 108
Target Start/End: Complemental strand, 9118837 - 9118800
Alignment:
| Q |
71 |
actccatagctataaacatcacttttatcggttaattg |
108 |
Q |
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|||||| ||||||||||||||||||| ||||||||||| |
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| T |
9118837 |
actccaaagctataaacatcacttttctcggttaattg |
9118800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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