View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5053-Insertion-3 (Length: 917)
Name: NF5053-Insertion-3
Description: NF5053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5053-Insertion-3 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 812; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 812; E-Value: 0
Query Start/End: Original strand, 8 - 917
Target Start/End: Complemental strand, 6972300 - 6971389
Alignment:
| Q |
8 |
atatatatagttattatatacattaggtatcaaatagagagcaaaggaattcaaaagaaaattaattagtggcgtaatataaatgttttagaggtctttg |
107 |
Q |
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| T |
6972300 |
atatatatagttattatatacattaagtatcaaatagagagcaaaggaattcaaaagaaaattaattagtggcgtaatataaaggttttagaggtctttg |
6972201 |
T |
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| Q |
108 |
caacggcatcacagttgtaatcgtagttgtatccaaccgtattttgccctaatatcaaggtttgtggcgtaatcacaatggcaatttagaaacacaactt |
207 |
Q |
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| T |
6972200 |
caacagcatcacagttgtaatagtagttgtatccaaccgtattttgccttaatatcaaggtttgtggcgtaatcacaatggcaatttagaaacacaactt |
6972101 |
T |
|
| Q |
208 |
taactagtgtaaactttattagcgtgtcactaattaattagtctcaatttttgtatcatgattccttgcggttgggatatcctgaattcacacagtcacc |
307 |
Q |
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| T |
6972100 |
taactagtgtaaactttattagcgtgtcactaattaattagtctcaatttttgtatcatgattccttgtggttgggatatcctgaattcacacagtcacc |
6972001 |
T |
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| Q |
308 |
ctgtatcaatgaatgttggatcaatattgaacaattataattttaaacttggtatattaaattttcgaaaataaaataaaatctacgtatttttgaaatg |
407 |
Q |
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| T |
6972000 |
ctgtatcaatgaatgttagatcaatatgtaacaattttaattttaaacttggtatatcaaattttcgaaaataaaataaaatctacgtatttttgaaatg |
6971901 |
T |
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| Q |
408 |
tttgatgtaaatctaacaatcggcaatacatgactgtgtgagtgcagggatatcctaattgcaccgaatacattttcctcgatttttcaataccttaagt |
507 |
Q |
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| T |
6971900 |
tttgatgtaaatctaacaatcggcaatacatgactgtgtgagtgtagggataccccaattgcaccgaatacgttttcctcgatttttcaataccttaagt |
6971801 |
T |
|
| Q |
508 |
ttttctcccatgaatgcaggggaaacaaggtgacgttggtgattccaatcttcaccatttgccattaacaagccttttccaataaaatgcttggaacctt |
607 |
Q |
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| T |
6971800 |
ttttctcccatgaatgcaggggaaacaatgtgacgttggtgattccaatcttcaccatttgccattaacaagccttttccaataaaatgcttggaacctt |
6971701 |
T |
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| Q |
608 |
gttgttgctgcaatgatttcccagatactgtactatactttgaaagaaactccttgatcaatgcagcctctgtgaggcacatccttggctctattccatt |
707 |
Q |
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| T |
6971700 |
gttgttgttgcaatgatttcccagatactgtactatactttgaaagaaactccttgatcaatgcagcctctgtgaggcacatccttggctctattccatt |
6971601 |
T |
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| Q |
708 |
ccaatatatgaatctctttcctgcaaaatcccattaataataatataatttgaaatcattatttaatacatgcacacaatctctctccctctctatgggg |
807 |
Q |
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| T |
6971600 |
ccaatatatgaatctctttcctgcaaaatcccattaataataatataatttgaaatcattatttaatacatgcacacaatctctctccctctctatgggg |
6971501 |
T |
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| Q |
808 |
ccatatttataagcactaatata-aaaacatcattctaatataaagtttaggtgagttggattttcagggctcgtc-aaattagagctgacctcaagatt |
905 |
Q |
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| T |
6971500 |
ccatatttataagcactaatataaaaaatatcattctaatataaagtttaggtgagttggattttcaggactcatcaaaatcagagctgacctcaagatt |
6971401 |
T |
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| Q |
906 |
taaagactgttt |
917 |
Q |
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| T |
6971400 |
taaagactgttt |
6971389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 1e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 514 - 729
Target Start/End: Complemental strand, 1266686 - 1266471
Alignment:
| Q |
514 |
cccatgaatgcaggggaaacaaggtgacgttggtgattccaatcttcaccatttgccattaacaagccttttccaataaaatgcttggaaccttgttgtt |
613 |
Q |
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| T |
1266686 |
cccatgaatgcaggggcaacaatgtgacgttggtgataccaattttcaccatttgccatcaatactccttctccaatgaaatgttttgaaccctgttttt |
1266587 |
T |
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| Q |
614 |
gctgcaatgatttcccagatactgtactatactttgaaagaaactccttgatcaatgcagcctctgtgaggcacatccttggctctattccattccaata |
713 |
Q |
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| T |
1266586 |
gtaaccatgatttcccagatactgtactgtattttgaaagaaactcttttatcaattcagtttctgtcaaacacaaccttggctctggaccattccaata |
1266487 |
T |
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| Q |
714 |
tatgaatctctttcct |
729 |
Q |
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| T |
1266486 |
tatatacctctttcct |
1266471 |
T |
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