View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5053-Insertion-5 (Length: 875)

Name: NF5053-Insertion-5
Description: NF5053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5053-Insertion-5
NF5053-Insertion-5
[»] chr1 (19 HSPs)
chr1 (8-863)||(43989649-43990504)
chr1 (259-394)||(41195261-41195394)
chr1 (223-333)||(27976523-27976630)
chr1 (258-333)||(37473327-37473402)
chr1 (683-751)||(42415955-42416023)
chr1 (266-394)||(14331659-14331784)
chr1 (320-392)||(33541837-33541906)
chr1 (240-340)||(37769712-37769809)
chr1 (117-187)||(38001663-38001733)
chr1 (117-193)||(2295158-2295234)
chr1 (140-196)||(37769627-37769683)
chr1 (689-772)||(43918156-43918237)
chr1 (29-76)||(42415559-42415606)
chr1 (13-92)||(43902655-43902733)
chr1 (244-333)||(44931989-44932074)
chr1 (144-194)||(10233607-10233657)
chr1 (212-283)||(3234040-3234107)
chr1 (257-318)||(24915117-24915178)
chr1 (212-257)||(42174856-42174900)
[»] chr3 (10 HSPs)
chr3 (210-394)||(20880347-20880523)
chr3 (221-393)||(30956659-30956825)
chr3 (221-393)||(30972471-30972637)
chr3 (264-393)||(35959529-35959655)
chr3 (118-190)||(402475-402547)
chr3 (221-384)||(12862281-12862437)
chr3 (117-190)||(34610738-34610811)
chr3 (212-376)||(20170411-20170568)
chr3 (272-340)||(46778308-46778376)
chr3 (304-392)||(1508694-1508779)
[»] chr5 (11 HSPs)
chr5 (683-774)||(8831177-8831268)
chr5 (209-393)||(32372495-32372673)
chr5 (117-193)||(10640015-10640091)
chr5 (265-340)||(35445975-35446051)
chr5 (266-394)||(3735566-3735691)
chr5 (212-343)||(29925759-29925886)
chr5 (117-190)||(41419384-41419457)
chr5 (276-393)||(24030487-24030601)
chr5 (340-394)||(9202884-9202938)
chr5 (117-187)||(41534506-41534576)
chr5 (327-394)||(42100199-42100263)
[»] chr8 (10 HSPs)
chr8 (117-394)||(1058009-1058274)
chr8 (257-332)||(10758322-10758397)
chr8 (304-390)||(9130423-9130506)
chr8 (209-340)||(12976134-12976260)
chr8 (129-193)||(40981166-40981230)
chr8 (257-332)||(12497297-12497372)
chr8 (340-394)||(40981000-40981054)
chr8 (117-189)||(11376768-11376841)
chr8 (302-393)||(14956406-14956494)
chr8 (97-167)||(38602415-38602481)
[»] chr2 (12 HSPs)
chr2 (272-394)||(15757740-15757866)
chr2 (224-394)||(41407171-41407336)
chr2 (257-340)||(42659217-42659300)
chr2 (212-340)||(32592508-32592631)
chr2 (264-332)||(41812163-41812231)
chr2 (209-375)||(33319834-33319994)
chr2 (151-193)||(41812058-41812100)
chr2 (117-190)||(4606990-4607063)
chr2 (117-193)||(42419855-42419931)
chr2 (344-394)||(5745560-5745610)
chr2 (257-335)||(41241198-41241276)
chr2 (221-391)||(41851408-41851572)
[»] chr6 (8 HSPs)
chr6 (229-394)||(24626165-24626324)
chr6 (222-394)||(6538387-6538548)
chr6 (350-393)||(9604741-9604784)
chr6 (131-189)||(20368127-20368185)
chr6 (264-340)||(30536399-30536475)
chr6 (221-282)||(8201212-8201270)
chr6 (272-376)||(18076084-18076185)
chr6 (340-394)||(35069432-35069486)
[»] chr7 (9 HSPs)
chr7 (264-340)||(46078068-46078144)
chr7 (209-318)||(40252129-40252234)
chr7 (302-394)||(9210498-9210587)
chr7 (340-394)||(38500064-38500118)
chr7 (274-394)||(45004636-45004753)
chr7 (117-193)||(19302495-19302571)
chr7 (257-333)||(33266550-33266626)
chr7 (117-193)||(34464153-34464229)
chr7 (136-192)||(28900939-28900996)
[»] chr4 (12 HSPs)
chr4 (707-774)||(45094744-45094813)
chr4 (117-193)||(17822797-17822873)
chr4 (257-340)||(22030125-22030207)
chr4 (212-333)||(54069442-54069559)
chr4 (117-193)||(24169325-24169401)
chr4 (276-332)||(31851383-31851439)
chr4 (320-366)||(40831164-40831210)
chr4 (139-188)||(22030270-22030319)
chr4 (264-333)||(41336689-41336757)
chr4 (272-333)||(43505884-43505945)
chr4 (340-393)||(44863098-44863151)
chr4 (221-332)||(50681122-50681230)


Alignment Details
Target: chr1 (Bit Score: 752; Significance: 0; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 752; E-Value: 0
Query Start/End: Original strand, 8 - 863
Target Start/End: Complemental strand, 43990504 - 43989649
Alignment:
Q  8 atgtatatgtatgcttaaacatctatgcatgcccttctcattacaactaaaaattatcaacatcacaatcaatttgtttgaaaaaactagcctgtttgga 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43990504 atgtatatgtatgcttaaacatctatgcatgcccttctcattacaactaaaaattatcaacatcacaatcaatttgtttgaaaaaactagcctgtttgga 43990405  T
Q  108 ttgacttaattatttgagttcatctactgatataaattttgtaaggctatttgggagaacgtttgaaaacagcttatgacattttttcacaatannnnnn 207  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||          
T  43990404 ttgacttaattatttgagttcatctactgatataaattttgtgaggctatttgggagaacgtttgaaaacagcttatgacattttttcacaatatttttt 43990305  T
Q  208 ncagcttattttgcataagttctccaagatgacttataaaaacaacttattataggatatacataaacaatttaactttgttttatcacttgccataaaa 307  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43990304 tcagcttattttgcataagttctccaagatgacttataaaaacaacttattataggatatacataaacaatttaactttgttttatcacttgccataaaa 43990205  T
Q  308 atagtttatgtgagcttatacataagcgtttattatcatgacaaacgcttgtgctataaactgcaaatacgctatttatccaaacagactcggtctttat 407  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43990204 atagtttatgtgagcttatacataagtgtttattatcatgacaaacgcttgtgctataaactgcaaatacgctatttatccaaacagactcggtctttat 43990105  T
Q  408 gtgttgcttcatacatgtaatcactgtgacaatggattatgtgcttgacagcaatattacataattgttttcttttttaacaggttaattaatattatat 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43990104 gtgttgcttcatacatgtaatcactgtgacaatggattatgtgcttgacagcaatattacataattgttttcttttttaacaggttaattaatattatat 43990005  T
Q  508 agtggttaaaaatatctagataaagaatgatatttgattccttaccctggataaggtttggtctcaatttgaatatgacaatatttgatcttgtagctgg 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43990004 agtggttaaaaatatctagataaagaatgatatttgattccttaccctggataaggtttggtctcaatttgaatatgacaatatttgatcttgtagctgg 43989905  T
Q  608 agagcaaattgggtgtgtgatgttannnnnnnnnnnnnnnnnnnnnnnnngccttgatgatggttttactatagttgcttctggttagttatcgacttct 707  Q
    |||||||||||||||||||||||||                         ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43989904 agagcaaattgggtgtgtgatgttatttttattttttattttgtgtttttgccttgatgatggttttactatagttgcttctggttagttatcgacttct 43989805  T
Q  708 tgtgtctgcaaagattactggctgctgctttttgtaatagactgcttcttaattacttgctggtagtgagtgacgtcgacccagatgatgaattcattga 807  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43989804 tgtgtctgcaaagattactggctgctgctttttgtaatagactgcttcttaattacttgctggtagtgagtgacgtcgacccagatgatgaattcattga 43989705  T
Q  808 acctgacaaaccaactcaactggtaaattacctgttgtttattagttcgagtcaaa 863  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43989704 acctgacaaaccaactcaactggtaaattacctgttgtttattagttcgagtcaaa 43989649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 259 - 394
Target Start/End: Original strand, 41195261 - 41195394
Alignment:
Q  259 ataggatatacataaacaatttaactttgtt-ttatcacttgccataaaaatagtttatgtgagcttatacataagcgtttattatcatgacaaacgctt 357  Q
    |||| ||||||| ||||| |||||||||  | |||||| || | ||||||||||||||||| | ||||||||||||||   ||||||| || || |||||    
T  41195261 atagtatatacaaaaacagtttaacttttatgttatcatttactataaaaatagtttatgtaaacttatacataagcg---attatcaggataagcgctt 41195357  T
Q  358 gtgctataaactgcaaatacgctatttatccaaacag 394  Q
    ||||||||| ||||||||| | |||||||||||||||    
T  41195358 gtgctataagctgcaaataagttatttatccaaacag 41195394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 223 - 333
Target Start/End: Complemental strand, 27976630 - 27976523
Alignment:
Q  223 taagttctccaagatgacttataaaaacaacttattataggatatacataaacaatttaactttgttttatcacttgccataaaaatagtttatgtgagc 322  Q
    ||||||||| |||||  ||||| ||||||||||||   || ||||||| ||||||||||||||||||  |||| |||| |||||||||| |||||| |||    
T  27976630 taagttctcgaagatagcttatgaaaacaacttat---agcatatacaaaaacaatttaactttgttcaatcatttgctataaaaatagcttatgtaagc 27976534  T
Q  323 ttatacataag 333  Q
    |||||||||||    
T  27976533 ttatacataag 27976523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 258 - 333
Target Start/End: Complemental strand, 37473402 - 37473327
Alignment:
Q  258 tataggatatacataaacaatttaactttgttttatcacttgccataaaaatagtttatgtgagcttatacataag 333  Q
    ||||| |||||||||||| | ||||||||||||||||| |||| |||||||||| |||||| ||||||||||||||    
T  37473402 tatagcatatacataaacgacttaactttgttttatcatttgctataaaaatagcttatgtaagcttatacataag 37473327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 683 - 751
Target Start/End: Original strand, 42415955 - 42416023
Alignment:
Q  683 tgcttctggttagttatcgacttcttgtgtctgcaaagattactggctgctgctttttgtaatagactg 751  Q
    ||||||| |||| |||||||||| |  |||||||||||| |||||||||||||||||||||||||||||    
T  42415955 tgcttctagttaattatcgacttgtcatgtctgcaaagactactggctgctgctttttgtaatagactg 42416023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 266 - 394
Target Start/End: Complemental strand, 14331784 - 14331659
Alignment:
Q  266 atacataaacaatttaactttgttttatcacttgccataaaaatagtttatgtgagcttatacataagcgtttattatcatgacaaacgcttgtgctata 365  Q
    ||||| ||||||||||||||| |||||||   | |  || |||||| |||||| ||||||||||||||   |  ||||||||| || |||||||||||||    
T  14331784 atacaaaaacaatttaactttattttatcttgttctgtagaaatagcttatgttagcttatacataag---tgcttatcatgagaagcgcttgtgctata 14331688  T
Q  366 aactgcaaatacgctatttatccaaacag 394  Q
    | || |||||| ||| |||||| ||||||    
T  14331687 agcttcaaataagctgtttatctaaacag 14331659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 320 - 392
Target Start/End: Original strand, 33541837 - 33541906
Alignment:
Q  320 agcttatacataagcgtttattatcatgacaaacgcttgtgctataaactgcaaatacgctatttatccaaac 392  Q
    |||||||||||||||| ||||   ||||| |||| |||||||||||||||||||||| | | |||||||||||    
T  33541837 agcttatacataagcgcttat---catgataaacacttgtgctataaactgcaaataagttgtttatccaaac 33541906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 240 - 340
Target Start/End: Original strand, 37769712 - 37769809
Alignment:
Q  240 cttataaaaacaacttattataggatatacataaacaatttaactttgttttatcacttgccataaaaatagtttatgtgagcttatacataagcgttta 339  Q
    |||||||||||||||| |   || ||| ||| ||| ||||||||||| |||||||| |||| ||||||||| ||||||| |  |||||||||| ||||||    
T  37769712 cttataaaaacaacttgt---agcataaacaaaaataatttaactttattttatcatttgctataaaaataatttatgtaaatttatacataatcgttta 37769808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 187
Target Start/End: Complemental strand, 38001733 - 38001663
Alignment:
Q  117 ttatttgagttcatctactgatataaattttgtaaggctatttgggagaacgtttgaaaacagcttatgac 187  Q
    ||||||||||| ||| ||||| |||| |||||| || || ||||||||||| | |||||||||||||||||    
T  38001733 ttatttgagtttatcaactgacataagttttgtgagactgtttgggagaacttatgaaaacagcttatgac 38001663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 193
Target Start/End: Complemental strand, 2295234 - 2295158
Alignment:
Q  117 ttatttgagttcatctactgatataaattttgtaaggctatttgggagaacgtttgaaaacagcttatgacattttt 193  Q
    ||||||||| | ||||||||  |||| |||||| || || ||||||||||| | |||||||||||||||||| ||||    
T  2295234 ttatttgagcttatctactggcataagttttgtgagactgtttgggagaacttatgaaaacagcttatgacaatttt 2295158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 196
Target Start/End: Original strand, 37769627 - 37769683
Alignment:
Q  140 taaattttgtaaggctatttgggagaacgtttgaaaacagcttatgacattttttca 196  Q
    |||||||||| || || ||||| | ||| ||||||||||||||||||||||||||||    
T  37769627 taaattttgtgagactgtttggcaaaacctttgaaaacagcttatgacattttttca 37769683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 689 - 772
Target Start/End: Original strand, 43918156 - 43918237
Alignment:
Q  689 tggttagttatcgacttcttgtgtctgcaaagattactggctgctgctttttgtaatagactgcttcttaattacttgctggta 772  Q
    |||||||||||||||||||||||||||||| ||| |   |||    ||| |||||| |||||||||| ||||||||||||||||    
T  43918156 tggttagttatcgacttcttgtgtctgcaatgatga--agctcagacttcttgtaaaagactgcttcataattacttgctggta 43918237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 76
Target Start/End: Original strand, 42415559 - 42415606
Alignment:
Q  29 tctatgcatgcccttctcattacaactaaaaattatcaacatcacaat 76  Q
    |||||| ||||| |||||||||||| || |||||||||||||||||||    
T  42415559 tctatgtatgcctttctcattacaattacaaattatcaacatcacaat 42415606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 92
Target Start/End: Original strand, 43902655 - 43902733
Alignment:
Q  13 tatgtatgcttaaacatctatgcatgcccttctcattacaactaaaaattatcaacatcacaatcaatttgtttgaaaaa 92  Q
    |||||||||||||  ||||||| ||  | |||||||||||| || ||||||||||| ||| |||||||||||| ||||||    
T  43902655 tatgtatgcttaacaatctatgtatatctttctcattacaattacaaattatcaacttca-aatcaatttgttggaaaaa 43902733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 244 - 333
Target Start/End: Original strand, 44931989 - 44932074
Alignment:
Q  244 taaaaacaacttattataggatatacataaacaatttaactttgttttatcacttgccataaaaatagtttatgtgagcttatacataag 333  Q
    |||||||||||||| |||| ||||||| |||||||||||||   |||||||  |||| ||||| ||||||||||  ||||||||| ||||    
T  44931989 taaaaacaacttat-atagcatatacaaaaacaatttaact---ttttatcttttgctataaatatagtttatgcaagcttatacctaag 44932074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 194
Target Start/End: Original strand, 10233607 - 10233657
Alignment:
Q  144 ttttgtaaggctatttgggagaacgtttgaaaacagcttatgacatttttt 194  Q
    ||||||||| || ||||| ||||| | ||||||||||||||||||||||||    
T  10233607 ttttgtaagactgtttggaagaacttatgaaaacagcttatgacatttttt 10233657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 283
Target Start/End: Original strand, 3234040 - 3234107
Alignment:
Q  212 cttattttgcataagttctccaagatgacttataaaaacaacttattataggatatacataaacaatttaac 283  Q
    |||||||| |||||||||||||| ||  ||||||||||||||   |||||| ||||||| ||||||||||||    
T  3234040 cttatttt-cataagttctccaatatagcttataaaaacaac---ttatagcatatacaaaaacaatttaac 3234107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 257 - 318
Target Start/End: Original strand, 24915117 - 24915178
Alignment:
Q  257 ttataggatatacataaacaatttaactttgttttatcacttgccataaaaatagtttatgt 318  Q
    |||||| ||||||| ||||||||||||||| |||||||   ||| ||| |||||||||||||    
T  24915117 ttatagcatatacaaaaacaatttaactttattttatcttctgctatagaaatagtttatgt 24915178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 257
Target Start/End: Complemental strand, 42174900 - 42174856
Alignment:
Q  212 cttattttgcataagttctccaagatgacttataaaaacaacttat 257  Q
    |||||||| |||||||||||||| || |||||||||||||||||||    
T  42174900 cttatttt-cataagttctccaatataacttataaaaacaacttat 42174856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 1e-25; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 210 - 394
Target Start/End: Complemental strand, 20880523 - 20880347
Alignment:
Q  210 agcttattttgcataagttctccaagatgacttataaaaacaacttattataggatatacataaacaatttaactttgttttatcacttgccataaaaat 309  Q
    |||||||||| |||||||||||||| ||  ||| ||||||||  ||||   || ||||||| |||||||||||||| ||||||||| |||| ||||||||    
T  20880523 agcttatttt-cataagttctccaatatagcttttaaaaacagtttat---agcatatacaaaaacaatttaactt-gttttatcatttgctataaaaat 20880429  T
Q  310 agtttatgtgagcttatacataagcgtttattatcatgacaaacgcttgtgctataaactgcaaatacgctatttatccaaacag 394  Q
    || |||||| |||||||||||||||  |||||   |||| || |||||||||||||||||||||||| | | | |||||||||||    
T  20880428 agcttatgtaagcttatacataagcacttatt---atgataaccgcttgtgctataaactgcaaataagttgtctatccaaacag 20880347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 221 - 393
Target Start/End: Original strand, 30956659 - 30956825
Alignment:
Q  221 cataagttctccaagatgacttataaaaacaacttattataggatatacataaacaatttaactttgttttatcacttgccataaaaatagtttatgtga 320  Q
    |||||||||||||||||  ||| | ||||||||||||   ||  |||||| ||||||||||||||| |||||||  |||| ||| |||||| |||||| |    
T  30956659 cataagttctccaagatagcttttgaaaacaacttat---agcctatacaaaaacaatttaactttattttatcttttgctatagaaatagcttatgtaa 30956755  T
Q  321 gcttatacataagcgtttattatcatgacaaacgcttgtgctataaactgcaaatacgctatttatccaaaca 393  Q
    |||||| |||||    |  ||||||||| || | |||||||||||| ||||||||| ||| ||||||||||||    
T  30956756 gcttatgcataa---atgcttatcatgataagcccttgtgctataagctgcaaataagctgtttatccaaaca 30956825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 221 - 393
Target Start/End: Original strand, 30972471 - 30972637
Alignment:
Q  221 cataagttctccaagatgacttataaaaacaacttattataggatatacataaacaatttaactttgttttatcacttgccataaaaatagtttatgtga 320  Q
    |||||||||||||||||  ||| | ||||||||||||   ||  |||||| ||||||||||||||| |||||||  |||| ||| |||||| |||||| |    
T  30972471 cataagttctccaagatagcttttgaaaacaacttat---agcctatacaaaaacaatttaactttattttatcttttgctatagaaatagcttatgtaa 30972567  T
Q  321 gcttatacataagcgtttattatcatgacaaacgcttgtgctataaactgcaaatacgctatttatccaaaca 393  Q
    |||||| |||||    |  ||||||||| || | |||||||||||| ||||||||| ||| ||||||||||||    
T  30972568 gcttatgcataa---atgcttatcatgataagcccttgtgctataagctgcaaataagctgtttatccaaaca 30972637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 264 - 393
Target Start/End: Original strand, 35959529 - 35959655
Alignment:
Q  264 atatacataaacaatttaactttgttttatcacttgccataaaaatagtttatgtgagcttatacataagcgtttattatcatgacaaacgcttgtgcta 363  Q
    ||||||| ||| ||||||||||| |||||||  || | ||| |||||| ||||||||||||||||||||||   | ||||||||| ||  ||||||| ||    
T  35959529 atatacaaaaataatttaactttattttatccttttctatagaaatagcttatgtgagcttatacataagc---tcttatcatgataagagcttgtgata 35959625  T
Q  364 taaactgcaaatacgctatttatccaaaca 393  Q
    ||| ||||||||| ||| ||||||||||||    
T  35959626 taagctgcaaataagctgtttatccaaaca 35959655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 190
Target Start/End: Original strand, 402475 - 402547
Alignment:
Q  118 tatttgagttcatctactgatataaattttgtaaggctatttgggagaacgtttgaaaacagcttatgacatt 190  Q
    |||||||||| ||| ||| | |||| ||||| ||| || ||||||||||||| ||||||||||||||||||||    
T  402475 tatttgagtttatcaactaacataagttttgcaagactgtttgggagaacgtatgaaaacagcttatgacatt 402547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 221 - 384
Target Start/End: Original strand, 12862281 - 12862437
Alignment:
Q  221 cataagttctccaagatgacttataaaaacaacttattataggatatacataaacaatttaactttgttttatcacttgccataaaaatagtttatgtga 320  Q
    |||||||||||||| ||  ||||| ||||||||||||   || ||||||| ||||||||||| | | |||||||  |||| |||||||||| |||||  |    
T  12862281 cataagttctccaatatagcttatgaaaacaacttat---agcatataca-aaacaatttaaatctattttatcttttgctataaaaatagattatgcaa 12862376  T
Q  321 gcttatacataagcgtttattatcatgacaaacgcttgtgctataaactgcaaatacgctattt 384  Q
    ||||| |||||||   |  ||||||| | || ||||| |||||||| ||||||||| |||||||    
T  12862377 gcttaaacataag---tgcttatcattataagcgcttttgctataacctgcaaataggctattt 12862437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 190
Target Start/End: Original strand, 34610738 - 34610811
Alignment:
Q  117 ttatttgagttcatctactgatataaattttgtaaggctatttgggagaacgtttgaaaacagcttatgacatt 190  Q
    ||||||||| | ||||||||| |||| |||||||   |||||||||||||| | ||||||| ||||||||||||    
T  34610738 ttatttgagcttatctactgacataagttttgtacaactatttgggagaacttatgaaaactgcttatgacatt 34610811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 212 - 376
Target Start/End: Complemental strand, 20170568 - 20170411
Alignment:
Q  212 cttattttgcataagttctccaagatgacttataaaaacaacttattataggatatacataaacaatttaactttgttttatcacttgccataaaaatag 311  Q
    |||||||| ||| ||||||| || || |||| ||||||||||||||   || ||||||| |||||||||||| || |||||||  ||||  |||||||||    
T  20170568 cttatttt-cattagttctcaaaaataacttgtaaaaacaacttat---agcatatacaaaaacaatttaacattattttatcttttgcagtaaaaatag 20170473  T
Q  312 tttatgtgagcttatacataagcgtttattatcatgacaaacgcttgtgctataaactgcaaata 376  Q
     || ||  |||| |||||||||||    ||||||||| || |  ||||| |||||||||||||||    
T  20170472 cttgtgcaagctgatacataagcg---cttatcatgaaaagcagttgtgatataaactgcaaata 20170411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 272 - 340
Target Start/End: Original strand, 46778308 - 46778376
Alignment:
Q  272 aaacaatttaactttgttttatcacttgccataaaaatagtttatgtgagcttatacataagcgtttat 340  Q
    ||||||||||||||| ||||||| ||||| ||| |||||| |||| | |||| ||||||||||| ||||    
T  46778308 aaacaatttaactttattttatctcttgctatagaaatagcttatataagctgatacataagcgcttat 46778376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 304 - 392
Target Start/End: Original strand, 1508694 - 1508779
Alignment:
Q  304 aaaaatagtttatgtgagcttatacataagcgtttattatcatgacaaacgcttgtgctataaactgcaaatacgctatttatccaaac 392  Q
    ||||||||||||||  ||||||||||||||||    ||||||||| || | ||||||||||||  |||||||| ||| ||| |||||||    
T  1508694 aaaaatagtttatgcaagcttatacataagcg---cttatcatgataagcacttgtgctataagttgcaaataagctgtttttccaaac 1508779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 1e-22; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 683 - 774
Target Start/End: Complemental strand, 8831268 - 8831177
Alignment:
Q  683 tgcttctggttagttatcgacttcttgtgtctgcaaagattactggctgctgctttttgtaatagactgcttcttaattacttgctggtagt 774  Q
    ||||| ||||||||||| |||||||||||||| |||||| ||||||||||||| ||||||||||| ||||| | |||||||| |||||||||    
T  8831268 tgcttttggttagttattgacttcttgtgtctacaaagactactggctgctgccttttgtaataggctgctgcataattactcgctggtagt 8831177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 209 - 393
Target Start/End: Complemental strand, 32372673 - 32372495
Alignment:
Q  209 cagcttattttgcataagttctccaagatgacttataaaaacaacttattataggatatacataaacaatttaactttgttttatcacttgccataaaaa 308  Q
    |||||||||||  ||| |||||||||||| |||| | |||||| |||||   || ||||||| |||||||| |||||| ||||||||  ||| |||| ||    
T  32372673 cagcttattttttatatgttctccaagataacttgtgaaaacagcttat---agcatatacaaaaacaattcaactttattttatcaggtgctataataa 32372577  T
Q  309 tagtttatgtgagcttatacataagcgtttattatcatgacaaacgcttgtgctataaactgcaaatacgctatttatccaaaca 393  Q
    |||||||||| ||  |||||||||| |    ||||||||| ||  ||||||||||||| ||||||||| | | ||||||||||||    
T  32372576 tagtttatgtaagtgtatacataaggg---cttatcatgataagtgcttgtgctataagctgcaaataagttgtttatccaaaca 32372495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 193
Target Start/End: Complemental strand, 10640091 - 10640015
Alignment:
Q  117 ttatttgagttcatctactgatataaattttgtaaggctatttgggagaacgtttgaaaacagcttatgacattttt 193  Q
    ||||||||||| ||||||||| |||| |||||| |   | ||||||||||| | |||||||||||||||||||||||    
T  10640091 ttatttgagtttatctactgacataagttttgtgatattgtttgggagaacttatgaaaacagcttatgacattttt 10640015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 265 - 340
Target Start/End: Complemental strand, 35446051 - 35445975
Alignment:
Q  265 tatacataaacaatttaactttgttttatcacttgccataaaaatagtttatgtgagc-ttatacataagcgtttat 340  Q
    |||||| ||||||||||||||| |||||||| |||| |||||||||| |||||| ||| |||||||| |||| ||||    
T  35446051 tatacaaaaacaatttaactttattttatcatttgctataaaaatagcttatgtaagctttatacattagcgcttat 35445975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 266 - 394
Target Start/End: Original strand, 3735566 - 3735691
Alignment:
Q  266 atacataaacaatttaactttgttttatcacttgccataaaaatagtttatgtgagcttatacataagcgtttattatcatgacaaacgcttgtgctata 365  Q
    ||||| ||| || |||||||| ||| |||  |||| ||| |||||| |||||| ||||||| |||||||| ||||   ||||| || | |||||||||||    
T  3735566 atacaaaaaaaaattaactttatttcatcttttgctatagaaatagcttatgtaagcttatccataagcgcttat---catgataatctcttgtgctata 3735662  T
Q  366 aactgcaaatacgctatttatccaaacag 394  Q
    | ||||||||| | | |||||||||||||    
T  3735663 agctgcaaataggttgtttatccaaacag 3735691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 212 - 343
Target Start/End: Complemental strand, 29925886 - 29925759
Alignment:
Q  212 cttattttgcataagttctccaagatgacttataaaaacaacttattataggatatacataaacaatttaactttgttttatcacttgccataaaaatag 311  Q
    |||||||| |||||||||||||| ||  |||||  |||||||||||   || | ||||| ||||||||||||  | |||||||  |||| ||||||||||    
T  29925886 cttatttt-cataagttctccaatatagcttatgtaaacaacttat---agcacatacagaaacaatttaacgctattttatcttttgctataaaaatag 29925791  T
Q  312 tttatgtgagcttatacataagcgtttattat 343  Q
     |||||  ||| ||||| ||||||||||||||    
T  29925790 cttatgcaagcatatacttaagcgtttattat 29925759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 190
Target Start/End: Complemental strand, 41419457 - 41419384
Alignment:
Q  117 ttatttgagttcatctactgatataaattttgtaaggctatttgggagaacgtttgaaaacagcttatgacatt 190  Q
    ||||||||| | ||||||||| ||||||||||| ||  | ||||||| ||| | ||||||||||||||||||||    
T  41419457 ttatttgagctaatctactgacataaattttgtgagattgtttgggataacttgtgaaaacagcttatgacatt 41419384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 276 - 393
Target Start/End: Original strand, 24030487 - 24030601
Alignment:
Q  276 aatttaactttgttttatcacttgccataaaaatagtttatgtgagcttatacataagcgtttattatcatgacaaacgcttgtgctataaactgcaaat 375  Q
    ||||||||||| |||||||  |||| |||  ||||| |||||||||||||||||   ||  ||||   ||||| ||  ||||||||||||| ||||||||    
T  24030487 aatttaactttattttatcggttgctatagcaatagcttatgtgagcttatacacgcgcacttat---catgataagtgcttgtgctataagctgcaaat 24030583  T
Q  376 acgctatttatccaaaca 393  Q
    | ||| ||||||||||||    
T  24030584 aagctgtttatccaaaca 24030601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 340 - 394
Target Start/End: Original strand, 9202884 - 9202938
Alignment:
Q  340 ttatcatgacaaacgcttgtgctataaactgcaaatacgctatttatccaaacag 394  Q
    ||||||||| |||| |||||||||||| ||||||||| | | |||||||||||||    
T  9202884 ttatcatgataaacacttgtgctataagctgcaaataagatgtttatccaaacag 9202938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 187
Target Start/End: Complemental strand, 41534576 - 41534506
Alignment:
Q  117 ttatttgagttcatctactgatataaattttgtaaggctatttgggagaacgtttgaaaacagcttatgac 187  Q
    ||||||||| | ||||||||| ||||||||||| ||  | ||||||| ||| | |||||||||||||||||    
T  41534576 ttatttgagctaatctactgacataaattttgtgagattgtttgggataacttgtgaaaacagcttatgac 41534506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 327 - 394
Target Start/End: Complemental strand, 42100263 - 42100199
Alignment:
Q  327 acataagcgtttattatcatgacaaacgcttgtgctataaactgcaaatacgctatttatccaaacag 394  Q
    ||||||||||||||||| ||   || |||||||| ||||| ||||||||| | |||||||||||||||    
T  42100263 acataagcgtttattattat---aagcgcttgtgatataagctgcaaataagttatttatccaaacag 42100199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 2e-20; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 117 - 394
Target Start/End: Original strand, 1058009 - 1058274
Alignment:
Q  117 ttatttgagttcatctactgatataaattttgtaaggctatttgggagaacgtttgaaaacagcttatgacattttttcacaatannnnnnncagcttat 216  Q
    ||||||||| | ||||||| | |||| |||||| || || ||||||||||| ||||||||| |||||||||||||||   || ||       | ||||||    
T  1058009 ttatttgagcttatctacttacataagttttgtgagactgtttgggagaacttttgaaaactgcttatgacattttt---cattagttttttccgcttat 1058105  T
Q  217 tttgcataagttctccaagatgacttataaaaacaacttattataggatatacataaacaatttaactttgttttatcacttgccataaaaatagtttat 316  Q
    ||| ||||||||||||||||| |  | | |||| | |||||   || ||||||| |||||  |||||||| |||||| | |||| |||||||||| ||||    
T  1058106 ttt-cataagttctccaagataa--tgtgaaaatagcttat---agcatatacaaaaacagattaactttattttatgatttgctataaaaatagcttat 1058199  T
Q  317 gtgagcttatacataagcgtttattatcatgacaaacgcttgtgctataaactgcaaatacgctatttatccaaacag 394  Q
    || ||||||||||||||||    |||||||   || |||||||||||||| ||||||||| ||| ||||| |||||||    
T  1058200 gtaagcttatacataagcg---cttatcatagtaagcgcttgtgctataagctgcaaataagctgtttattcaaacag 1058274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 257 - 332
Target Start/End: Original strand, 10758322 - 10758397
Alignment:
Q  257 ttataggatatacataaacaatttaactttgttttatcacttgccataaaaatagtttatgtgagcttatacataa 332  Q
    |||||| ||||||| ||||||||||||||| |||||| | |||| ||| |||||||||| ||||||||||||||||    
T  10758322 ttatagcatatacaaaaacaatttaactttattttatgatttgctatagaaatagtttacgtgagcttatacataa 10758397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 304 - 390
Target Start/End: Original strand, 9130423 - 9130506
Alignment:
Q  304 aaaaatagtttatgtgagcttatacataagcgtttattatcatgacaaacgcttgtgctataaactgcaaatacgctatttatccaa 390  Q
    |||||||| ||||| ||||||||||||||| | |||| || ||||| |   |||||||||||| ||||||||| |||||||||||||    
T  9130423 aaaaatagcttatgcgagcttatacataagtgattatcatgatgacca---cttgtgctataagctgcaaataagctatttatccaa 9130506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 209 - 340
Target Start/End: Complemental strand, 12976260 - 12976134
Alignment:
Q  209 cagcttattttgcataagttctccaagatgacttataaaaacaacttattataggatatacataaacaatttaactttgttttatcacttgccataaaaa 308  Q
    ||||||||||  ||||||||||| || ||  |||||||||||||   ||| ||| ||||| | ||  ||||||||||| ||||||   |||| ||| |||    
T  12976260 cagcttattt--cataagttctctaatatagcttataaaaacaa---attgtagcatataaaaaattaatttaactttattttatattttgctatagaaa 12976166  T
Q  309 tagtttatgtgagcttatacataagcgtttat 340  Q
    ||| ||||||||||||||||||||||| ||||    
T  12976165 tagcttatgtgagcttatacataagcgcttat 12976134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 193
Target Start/End: Complemental strand, 40981230 - 40981166
Alignment:
Q  129 atctactgatataaattttgtaaggctatttgggagaacgtttgaaaacagcttatgacattttt 193  Q
    |||||||| ||||  |||||  ||||| ||||||||||| |||||||||| ||||||||||||||    
T  40981230 atctactggtatatgttttgcgaggctgtttgggagaacatttgaaaacaacttatgacattttt 40981166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 257 - 332
Target Start/End: Original strand, 12497297 - 12497372
Alignment:
Q  257 ttataggatatacataaacaatttaactttgttttatcacttgccataaaaatagtttatgtgagcttatacataa 332  Q
    |||||| ||||||| |||||| |||||||| |||||||  |||| |||||||| | |||||  |||||||||||||    
T  12497297 ttatagcatatacaaaaacaagttaactttattttatcttttgctataaaaatggcttatgcaagcttatacataa 12497372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 340 - 394
Target Start/End: Complemental strand, 40981054 - 40981000
Alignment:
Q  340 ttatcatgacaaacgcttgtgctataaactgcaaatacgctatttatccaaacag 394  Q
    |||||| || || |||||||||||||| ||||||||| ||| |||||||||||||    
T  40981054 ttatcaagataagcgcttgtgctataagctgcaaataagctgtttatccaaacag 40981000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 189
Target Start/End: Complemental strand, 11376841 - 11376768
Alignment:
Q  117 ttatttgagttcatctactgatataaatt-ttgtaaggctatttgggagaacgtttgaaaacagcttatgacat 189  Q
    ||||||||| | |||||||||||||| || |||| || |||||||||||||| | |||||| ||||| ||||||    
T  11376841 ttatttgagcttatctactgatataagttcttgtgagactatttgggagaacttatgaaaatagcttgtgacat 11376768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 302 - 393
Target Start/End: Original strand, 14956406 - 14956494
Alignment:
Q  302 ataaaaatagtttatgtgagcttatacataagcgtttattatcatgacaaacgcttgtgctataaactgcaaatacgctatttatccaaaca 393  Q
    |||||||||| |||||  ||||||||||||||   |  ||||||||| || || ||||||||||| ||||||||| | | ||||||||||||    
T  14956406 ataaaaatagcttatgcaagcttatacataag---tgcttatcatgataagcgattgtgctataagctgcaaataagttgtttatccaaaca 14956494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 167
Target Start/End: Complemental strand, 38602481 - 38602415
Alignment:
Q  97 gcctgtttggattgacttaattatttgagttcatctactgatataaattttgtaaggctatttgggagaac 167  Q
    |||||||||||||||||||    |||||| | ||||||||| |||| |||||| ||||| |||||||||||    
T  38602481 gcctgtttggattgactta----tttgagcttatctactgacataagttttgtgaggctgtttgggagaac 38602415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 4e-19; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 272 - 394
Target Start/End: Original strand, 15757740 - 15757866
Alignment:
Q  272 aaacaatttaactttgttttatcacttgccataaaaatagtttatgtgagcttatacataagcgtttat----tatcatgacaaacgcttgtgctataaa 367  Q
    ||||||||||||||| |||||||| || |  || | |||| |||||||||||||||||||||| |||||    |||||||| || ||||||||||||||     
T  15757740 aaacaatttaactttattttatcattttctttagatatagcttatgtgagcttatacataagcttttatcgcttatcatgataagcgcttgtgctataag 15757839  T
Q  368 ctgcaaatacgctatttatccaaacag 394  Q
    ||| ||||| ||| |||||||||||||    
T  15757840 ctgaaaataagctgtttatccaaacag 15757866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 224 - 394
Target Start/End: Complemental strand, 41407336 - 41407171
Alignment:
Q  224 aagttctccaagatgacttataaaaacaacttattataggatatacataaa-caatttaactttgttttatcacttgccataaaaatagtttatgtgagc 322  Q
    |||||||| ||||  ||||||||||| |||||||   || ||||||| ||| |||||||||||| |||||||  |||  | | |||||| |||||| |||    
T  41407336 aagttctcaaagaaaacttataaaaataacttat---agcatatacaaaaaacaatttaactttattttatcttttggtacagaaatagcttatgtaagc 41407240  T
Q  323 ttatacataagcgtttattatcatgacaaacgcttgtgctataaactgcaaatacgctatttatccaaacag 394  Q
    |||||||||||   |  ||||||||| || |||||||||||||| ||||||| | ||| |||||||||||||    
T  41407239 ttatacataag---tgcttatcatgataagcgcttgtgctataagctgcaaacaagctgtttatccaaacag 41407171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 257 - 340
Target Start/End: Original strand, 42659217 - 42659300
Alignment:
Q  257 ttataggatatacataaacaatttaactttgttttatcacttgccataaaaatagtttatgtgagcttatacataagcgtttat 340  Q
    |||||| ||||||| ||||||||| ||||| ||||| || || |||||||||||| |||||| |||||||||||||||| ||||    
T  42659217 ttatagcatatacaaaaacaatttcactttattttaccattttccataaaaatagcttatgtaagcttatacataagcgcttat 42659300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 212 - 340
Target Start/End: Complemental strand, 32592631 - 32592508
Alignment:
Q  212 cttattttgcataagttctccaagatgacttataaaaacaacttattataggatatacataaacaatttaactttgttttatcacttgccataaaaatag 311  Q
    |||||||| |||||||||||||| ||  ||||||||||||||||||   ||  |||||| |||||||||||| || |||||||  || | ||||||||||    
T  32592631 cttatttt-cataagttctccaatattgcttataaaaacaacttat---agcgtataca-aaacaatttaacattattttatctttttctataaaaatag 32592537  T
Q  312 tttatgtgagcttatacataagcgtttat 340  Q
    ||||||  |||||||||||||||| ||||    
T  32592536 tttatgcaagcttatacataagcgcttat 32592508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 264 - 332
Target Start/End: Original strand, 41812163 - 41812231
Alignment:
Q  264 atatacataaacaatttaactttgttttatcacttgccataaaaatagtttatgtgagcttatacataa 332  Q
    ||||||| ||||||||||||||  ||||| || ||||||||||||||| |||||| |||||||||||||    
T  41812163 atatacaaaaacaatttaacttcattttaccatttgccataaaaatagcttatgtaagcttatacataa 41812231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 209 - 375
Target Start/End: Original strand, 33319834 - 33319994
Alignment:
Q  209 cagcttattttgcataagttctccaagatgacttataaaaacaacttattataggatatacataaacaatttaactttgtt-ttatcacttgccataaaa 307  Q
    ||||||||||| |||||||||||||||||   |||| ||||||  ||||   || ||||||| ||||| |||||||||  | |||||| || | ||||||    
T  33319834 cagcttatttt-cataagttctccaagatagtttatgaaaacagtttat---agtatatacaaaaacagtttaacttttatgttatcatttactataaaa 33319929  T
Q  308 atagtttatgtgagcttatacataagcgtttattatcatgacaaacgcttgtgctataaactgcaaat 375  Q
    ||||||||||| | ||| ||||||||||   ||||||| || || |||||||||||||| ||||||||    
T  33319930 atagtttatgtaaacttttacataagcg---attatcaggataagcgcttgtgctataagctgcaaat 33319994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 193
Target Start/End: Original strand, 41812058 - 41812100
Alignment:
Q  151 aggctatttgggagaacgtttgaaaacagcttatgacattttt 193  Q
    ||||| ||||||||||| |||||||||||||||||||||||||    
T  41812058 aggctgtttgggagaacttttgaaaacagcttatgacattttt 41812100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 190
Target Start/End: Complemental strand, 4607063 - 4606990
Alignment:
Q  117 ttatttgagttcatctactgatataaattttgtaaggctatttgggagaacgtttgaaaacagcttatgacatt 190  Q
    ||||||||| | ||||||  |||||| |||||| || |||||||||||||| | |||||||| |||||||||||    
T  4607063 ttatttgagcttatctaccaatataagttttgtgagactatttgggagaacttgtgaaaacaacttatgacatt 4606990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 193
Target Start/End: Complemental strand, 42419931 - 42419855
Alignment:
Q  117 ttatttgagttcatctactgatataaattttgtaaggctatttgggagaacgtttgaaaacagcttatgacattttt 193  Q
    ||||||||||| |||| |||| |||| |||| | || || ||||||||||| |  ||||||||||||||||||||||    
T  42419931 ttatttgagtttatcttctgacataagttttttgagactgtttgggagaacttacgaaaacagcttatgacattttt 42419855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 344 - 394
Target Start/End: Original strand, 5745560 - 5745610
Alignment:
Q  344 catgacaaacgcttgtgctataaactgcaaatacgctatttatccaaacag 394  Q
    ||||| ||||||||||| ||||| ||||||||| ||| |||||||||||||    
T  5745560 catgataaacgcttgtgatataagctgcaaataagctctttatccaaacag 5745610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 257 - 335
Target Start/End: Original strand, 41241198 - 41241276
Alignment:
Q  257 ttataggatatacataaacaatttaactttgttttatcacttgccataaaaatagtttatgtgagcttatacataagcg 335  Q
    |||||| ||||||| ||||||||||||||  |||||||  || | ||| |||||| |||||| ||||||| ||||||||    
T  41241198 ttatagcatatacaaaaacaatttaacttcattttatcttttcctatagaaatagcttatgtaagcttatccataagcg 41241276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 221 - 391
Target Start/End: Complemental strand, 41851572 - 41851408
Alignment:
Q  221 cataagttctccaagatgacttataaaaacaacttattataggatatacataaacaatttaactttgttttatcacttgccataaaaatagtttatgtga 320  Q
    ||||| |||||||||||  ||| | ||||||||||||   || ||||||| ||||||||||||||| || ||||  || | ||| |||||  |  ||| |    
T  41851572 cataaattctccaagatagcttctgaaaacaacttat---agcatatacaaaaacaatttaactttattgtatcttttcctatataaatatctcgtgtaa 41851476  T
Q  321 gcttatacataagcgtttattatcatgacaaacgcttgtgctataaactgcaaatacgctatttatccaaa 391  Q
    ||||||| ||||||||   ||| ||||| || |||||||||||||  ||||||||| | | ||||||||||    
T  41851475 gcttatatataagcgt---ttagcatgataagcgcttgtgctatatgctgcaaataagatgtttatccaaa 41851408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 9e-17; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 229 - 394
Target Start/End: Complemental strand, 24626324 - 24626165
Alignment:
Q  229 ctccaagatgacttataaaaacaacttattataggatatacataaacaatttaactttgttttatcacttgccataaaaatagtttatgtgagcttatac 328  Q
    |||||||||  ||||| ||||||||||||   || ||||||| |||||||||||||||||||||||  || | ||| |||||| |||||| |||||||||    
T  24626324 ctccaagatagcttatgaaaacaacttat---agaatatacaaaaacaatttaactttgttttatcctttcctatagaaatagcttatgtaagcttatac 24626228  T
Q  329 ataagcgtttattatcatgacaaacgcttgtgctataaactgcaaatacgctatttatccaaacag 394  Q
    ||||||    || ||||||| || |  ||||||||||| ||| ||||| | | |||||||||||||    
T  24626227 ataagc---aatcatcatgataagcatttgtgctataagctgtaaataagttgtttatccaaacag 24626165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 222 - 394
Target Start/End: Complemental strand, 6538548 - 6538387
Alignment:
Q  222 ataagttctccaagatgacttataaaaacaacttattataggatatacataaacaatttaactttgttttatcacttgccataaaaatagtttatgtgag 321  Q
    ||||||||||||| ||  | ||||||||||||||||   || |||||||||||||||||||| || | ||     |||| | |||| ||  |||||  ||    
T  6538548 ataagttctccaatatagcctataaaaacaacttat---agcatatacataaacaatttaacattatctt-----ttgctaaaaaactaacttatgcaag 6538457  T
Q  322 cttatacataagcgtttattatcatgacaaacgcttgtgctataaactgcaaatacgctatttatccaaacag 394  Q
    |||||||||||||| |||| || ||   ||  ||||||||||||| ||||||||| |||||||||||||||||    
T  6538456 cttatacataagcgcttatcattat---aagtgcttgtgctataagctgcaaataagctatttatccaaacag 6538387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 350 - 393
Target Start/End: Complemental strand, 9604784 - 9604741
Alignment:
Q  350 aaacgcttgtgctataaactgcaaatacgctatttatccaaaca 393  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||    
T  9604784 aaacgcttgtgctataaactgcaaataagctgtttatccaaaca 9604741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 189
Target Start/End: Original strand, 20368127 - 20368185
Alignment:
Q  131 ctactgatataaattttgtaaggctatttgggagaacgtttgaaaacagcttatgacat 189  Q
    ||||||| |||| ||||||||| |||||||||||||| | |||||||| ||||||||||    
T  20368127 ctactgacataagttttgtaagactatttgggagaacttatgaaaacaacttatgacat 20368185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 264 - 340
Target Start/End: Complemental strand, 30536475 - 30536399
Alignment:
Q  264 atatacataaacaatttaactttgttttatcacttgccataaaaatagtttatgtgagcttatacataagcgtttat 340  Q
    ||||||| |||||||||||| || |||||||| |||| |||| ||||| |||||  | ||||||||||||| |||||    
T  30536475 atatacaaaaacaatttaacattattttatcatttgctataataatagcttatgcaaacttatacataagcttttat 30536399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 221 - 282
Target Start/End: Complemental strand, 8201270 - 8201212
Alignment:
Q  221 cataagttctccaagatgacttataaaaacaacttattataggatatacataaacaatttaa 282  Q
    |||||||||||||| || |||||||||||||||   |||||||||| ||| |||||||||||    
T  8201270 cataagttctccaacataacttataaaaacaac---ttataggatacacaaaaacaatttaa 8201212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 272 - 376
Target Start/End: Complemental strand, 18076185 - 18076084
Alignment:
Q  272 aaacaatttaactttgttttatcacttgccataaaaatagtttatgtgagcttatacataagcgtttattatcatgacaaacgcttgtgctataaactgc 371  Q
    |||||||||||| || |||| ||  |||| |||||||||  |||||  |||||||||||||| | |||||   |||| || |||||||||||||| ||||    
T  18076185 aaacaatttaaccttattttctcttttgctataaaaataacttatgcaagcttatacataagtgcttatt---atgataagcgcttgtgctataagctgc 18076089  T
Q  372 aaata 376  Q
    |||||    
T  18076088 aaata 18076084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 340 - 394
Target Start/End: Complemental strand, 35069486 - 35069432
Alignment:
Q  340 ttatcatgacaaacgcttgtgctataaactgcaaatacgctatttatccaaacag 394  Q
    ||||||||| ||||||||||||||||| ||||||||| | | |||||| ||||||    
T  35069486 ttatcatgataaacgcttgtgctataagctgcaaataagttgtttatcaaaacag 35069432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 264 - 340
Target Start/End: Complemental strand, 46078144 - 46078068
Alignment:
Q  264 atatacataaacaatttaactttgttttatcacttgccataaaaatagtttatgtgagcttatacataagcgtttat 340  Q
    ||||||| |||||||||||||||||||||||  || | |||||||||  |||||| |||||||||||||||| ||||    
T  46078144 atatacaaaaacaatttaactttgttttatctttttctataaaaataacttatgtaagcttatacataagcgcttat 46078068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 209 - 318
Target Start/End: Original strand, 40252129 - 40252234
Alignment:
Q  209 cagcttattttgcataagttctccaagatgacttataaaaacaacttattataggatatacataaacaatttaactttgttttatcacttgccataaaaa 308  Q
    ||||||||||| ||||||||||||||||| |||||| |||| | |   |||||  ||||||| |||| ||||||||||||||||||| |||| ||||||     
T  40252129 cagcttatttt-cataagttctccaagataacttatgaaaagagc---ttataacatatacaaaaacgatttaactttgttttatcatttgcaataaaac 40252224  T
Q  309 tagtttatgt 318  Q
    ||| ||||||    
T  40252225 tagcttatgt 40252234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 302 - 394
Target Start/End: Complemental strand, 9210587 - 9210498
Alignment:
Q  302 ataaaaatagtttatgtgagcttatacataagcgtttattatcatgacaaacgcttgtgctataaactgcaaatacgctatttatccaaacag 394  Q
    |||||| ||| |||||  ||||||||||||||||   |||||||||| ||| | ||| ||||||| ||||||||| ||| |||||||||||||    
T  9210587 ataaaagtagcttatgcaagcttatacataagcg---attatcatgataaatgtttgcgctataagctgcaaataagctgtttatccaaacag 9210498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 340 - 394
Target Start/End: Original strand, 38500064 - 38500118
Alignment:
Q  340 ttatcatgacaaacgcttgtgctataaactgcaaatacgctatttatccaaacag 394  Q
    ||||||||| || |||||||||||||||||||||||| ||| |||||| ||||||    
T  38500064 ttatcatgataagcgcttgtgctataaactgcaaataagctgtttatctaaacag 38500118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 274 - 394
Target Start/End: Complemental strand, 45004753 - 45004636
Alignment:
Q  274 acaatttaactttgttttatcacttgccataaaaatagtttatgtgagcttatacataagcgtttattatcatgacaaacgcttgtgctataaactgcaa 373  Q
    ||||||||||||| |||||||  |||| ||||||||||||||||  ||| ||||   |  ||||||| || ||   ||  ||||||||||||||||||||    
T  45004753 acaatttaactttattttatcttttgctataaaaatagtttatgcaagcatataggcacacgtttatcataat---aattgcttgtgctataaactgcaa 45004657  T
Q  374 atacgctatttatccaaacag 394  Q
    ||| | |||||||||||||||    
T  45004656 ataagttatttatccaaacag 45004636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 193
Target Start/End: Original strand, 19302495 - 19302571
Alignment:
Q  117 ttatttgagttcatctactgatataaattttgtaaggctatttgggagaacgtttgaaaacagcttatgacattttt 193  Q
    ||||||||| | ||||||||| |||| |||||| ||  ||||||||||||  | |||||||||||||||||| ||||    
T  19302495 ttatttgagcttatctactgacataagttttgtgagaatatttgggagaatttatgaaaacagcttatgacaatttt 19302571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 257 - 333
Target Start/End: Original strand, 33266550 - 33266626
Alignment:
Q  257 ttataggatatacataaacaatttaactttgttttatcacttgccataaaaatagtttatgtgagcttatacataag 333  Q
    ||||||||| || | || |||||||||||| |||||||  |||| ||| |||||| || ||||||||||||||||||    
T  33266550 ttataggatgtagaaaagcaatttaactttattttatcctttgctatataaatagcttttgtgagcttatacataag 33266626  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 193
Target Start/End: Original strand, 34464153 - 34464229
Alignment:
Q  117 ttatttgagttcatctactgatataaattttgtaaggctatttgggagaacgtttgaaaacagcttatgacattttt 193  Q
    ||||||||||| ||||| ||| |||||||||  ||| || |||||||| || | |||||||||||||||||| ||||    
T  34464153 ttatttgagtttatctattgacataaattttacaagactttttgggaggacttatgaaaacagcttatgacaatttt 34464229  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 192
Target Start/End: Complemental strand, 28900996 - 28900939
Alignment:
Q  136 gatataaattttgtaaggctatttgggagaacgttt-gaaaacagcttatgacatttt 192  Q
    ||||||||||||| |||  |||||| |||||| ||| |||||||||||||||||||||    
T  28900996 gatataaattttgcaagagtatttgagagaacattttgaaaacagcttatgacatttt 28900939  T

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Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 707 - 774
Target Start/End: Complemental strand, 45094813 - 45094744
Alignment:
Q  707 ttgtgtctgcaaagattactggctgctgctttttg--taatagactgcttcttaattacttgctggtagt 774  Q
    ||||||||||||||  |||||||||||||||||||  |||||||||||| | ||||| ||||||||||||    
T  45094813 ttgtgtctgcaaagtctactggctgctgctttttgcctaatagactgctgcataattccttgctggtagt 45094744  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 193
Target Start/End: Original strand, 17822797 - 17822873
Alignment:
Q  117 ttatttgagttcatctactgatataaattttgtaaggctatttgggagaacgtttgaaaacagcttatgacattttt 193  Q
    ||||||||| | ||||||||| |||| || ||| || |||||| ||||||| | |||||||||||||||||||||||    
T  17822797 ttatttgagcttatctactgacataagttctgtgagactatttaggagaacatatgaaaacagcttatgacattttt 17822873  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 257 - 340
Target Start/End: Complemental strand, 22030207 - 22030125
Alignment:
Q  257 ttataggatatacataaacaatttaactttgttttatcacttgccataaaaatagtttatgtgagcttatacataagcgtttat 340  Q
    |||||| ||||||| ||| ||| ||||||| ||||||| ||| | ||| |||||| ||||||||||||||||||||||| ||||    
T  22030207 ttatagcatatacaaaaataatataactttattttatc-ctttctatagaaatagcttatgtgagcttatacataagcgcttat 22030125  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 212 - 333
Target Start/End: Original strand, 54069442 - 54069559
Alignment:
Q  212 cttattttgcataagttctccaagatgacttataaaaacaacttattataggatatacataaacaatttaactttgttttatcacttgccataaaaatag 311  Q
    |||||||| |||| ||||| ||| || ||||||||||||||   ||||||| ||||||| |||||||||||| || |||||||  |||  ||||||||||    
T  54069442 cttatttt-catatgttcttcaatataacttataaaaacaa---attatagcatatacaaaaacaatttaacattattttatcttttgatataaaaatag 54069537  T
Q  312 tttatgtgagcttatacataag 333  Q
      ||||  ||||||||||||||    
T  54069538 catatgcaagcttatacataag 54069559  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 193
Target Start/End: Complemental strand, 24169401 - 24169325
Alignment:
Q  117 ttatttgagttcatctactgatataaattttgtaaggctatttgggagaacgtttgaaaacagcttatgacattttt 193  Q
    ||||| ||||| ||||||||  |||| |||||| || ||||||| |||||| ||| |||| ||||||||||||||||    
T  24169401 ttattagagtttatctactggcataagttttgtgagactatttgagagaacttttaaaaatagcttatgacattttt 24169325  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 276 - 332
Target Start/End: Complemental strand, 31851439 - 31851383
Alignment:
Q  276 aatttaactttgttttatcacttgccataaaaatagtttatgtgagcttatacataa 332  Q
    ||||||||||| |||||||| |||  |||||||||| |||||||||||| |||||||    
T  31851439 aatttaactttattttatcatttgttataaaaatagcttatgtgagcttctacataa 31851383  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 320 - 366
Target Start/End: Original strand, 40831164 - 40831210
Alignment:
Q  320 agcttatacataagcgtttattatcatgacaaacgcttgtgctataa 366  Q
    ||||||| |||||||| |||||||||||| || ||||||||||||||    
T  40831164 agcttattcataagcgcttattatcatgataagcgcttgtgctataa 40831210  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 188
Target Start/End: Complemental strand, 22030319 - 22030270
Alignment:
Q  139 ataaattttgtaaggctatttgggagaacgtttgaaaacagcttatgaca 188  Q
    |||| |||||| || |||||||||||||| | ||||||||||||||||||    
T  22030319 ataagttttgtgagcctatttgggagaacttatgaaaacagcttatgaca 22030270  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 264 - 333
Target Start/End: Complemental strand, 41336757 - 41336689
Alignment:
Q  264 atatacataaacaatttaactttgttttatcacttgccataaaaatagtttatgtgagcttatacataag 333  Q
    ||||||| ||||||||||||||| |||||||  |||| |||||||||| |||||  ||| ||||||||||    
T  41336757 atatacaaaaacaatttaactttattttatc-tttgctataaaaatagcttatgcaagcctatacataag 41336689  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 272 - 333
Target Start/End: Complemental strand, 43505945 - 43505884
Alignment:
Q  272 aaacaatttaactttgttttatcacttgccataaaaatagtttatgtgagcttatacataag 333  Q
    |||||||||||| || |||||||  |||| |||||||||| |||||  ||||||||||||||    
T  43505945 aaacaatttaacgttattttatcttttgctataaaaatagcttatgcaagcttatacataag 43505884  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 340 - 393
Target Start/End: Original strand, 44863098 - 44863151
Alignment:
Q  340 ttatcatgacaaacgcttgtgctataaactgcaaatacgctatttatccaaaca 393  Q
    ||||||||||||  ||||||||||||| ||||||||| | | ||||||||||||    
T  44863098 ttatcatgacaagtgcttgtgctataagctgcaaataagttgtttatccaaaca 44863151  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 221 - 332
Target Start/End: Original strand, 50681122 - 50681230
Alignment:
Q  221 cataagttctccaagatgacttataaaaacaacttattataggatatacataaacaatttaactttgttttatcacttgccataaaaatagtttatgtga 320  Q
    ||||| |||||||| ||  |||||| |||||||||||   || ||||||| |||||||||||| || |||||||   | | |||||||||| || ||| |    
T  50681122 cataatttctccaatatagcttatataaacaacttat---agcatatacaaaaacaatttaacattattttatcttatcctataaaaatagcttttgtaa 50681218  T
Q  321 gcttatacataa 332  Q
    ||||||||||||    
T  50681219 gcttatacataa 50681230  T

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