View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5053_high_10 (Length: 394)

Name: NF5053_high_10
Description: NF5053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5053_high_10
NF5053_high_10
[»] chr7 (4 HSPs)
chr7 (233-371)||(5975597-5975735)
chr7 (21-64)||(5975394-5975437)
chr7 (231-271)||(38758268-38758308)
chr7 (137-190)||(5975510-5975564)
[»] chr3 (11 HSPs)
chr3 (18-64)||(13645214-13645260)
chr3 (137-195)||(1677127-1677186)
chr3 (18-64)||(1677259-1677305)
chr3 (209-271)||(3149330-3149392)
chr3 (232-336)||(55196577-55196682)
chr3 (18-66)||(26538698-26538746)
chr3 (137-199)||(26538804-26538867)
chr3 (236-271)||(27662566-27662601)
chr3 (18-64)||(55196852-55196898)
chr3 (137-199)||(13645335-13645399)
chr3 (231-271)||(26538899-26538939)
[»] chr8 (3 HSPs)
chr8 (232-336)||(7274603-7274707)
chr8 (18-64)||(7274388-7274434)
chr8 (236-272)||(45447073-45447109)
[»] chr4 (6 HSPs)
chr4 (137-336)||(20945864-20946064)
chr4 (231-271)||(11148418-11148458)
chr4 (18-64)||(20946137-20946183)
chr4 (233-271)||(41245926-41245964)
chr4 (232-336)||(2671544-2671649)
chr4 (231-271)||(34539749-34539789)
[»] chr2 (4 HSPs)
chr2 (226-271)||(28167276-28167321)
chr2 (18-64)||(5696106-5696152)
chr2 (209-272)||(44906064-44906127)
chr2 (19-59)||(30546032-30546072)
[»] chr5 (1 HSPs)
chr5 (231-271)||(6535593-6535633)
[»] chr1 (2 HSPs)
chr1 (18-64)||(43882330-43882376)
chr1 (231-271)||(13222981-13223021)
[»] chr6 (1 HSPs)
chr6 (221-271)||(1134208-1134258)


Alignment Details
Target: chr7 (Bit Score: 98; Significance: 4e-48; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 233 - 371
Target Start/End: Original strand, 5975597 - 5975735
Alignment:
Q  233 atgtcaaaaggttaagtaaatacaagggttgtttcgcaatnnnnnnngatacatagactaaaacaaaaaatgcacgaacttgcgaggacgtttttcttat 332  Q
    ||||||||||||||||||||||||||||||||||| ||||       ||||||| |||||||||||||||||||| ||||| ||||||||||||||||||    
T  5975597 atgtcaaaaggttaagtaaatacaagggttgtttcacaatgaaaaaagatacatggactaaaacaaaaaatgcacaaacttacgaggacgtttttcttat 5975696  T
Q  333 ttaaaccaaaatattactaatatcacttacggtcaaact 371  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  5975697 ttaaaccaaaatattactaatatcacttacagtcaaact 5975735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 64
Target Start/End: Original strand, 5975394 - 5975437
Alignment:
Q  21 aagaagagagaaagaacatagtgaggaacaaggtggaaagaata 64  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  5975394 aagaagagagaaagaacataatgaggaacaaggtggaaagaata 5975437  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 231 - 271
Target Start/End: Original strand, 38758268 - 38758308
Alignment:
Q  231 caatgtcaaaaggttaagtaaatacaagggttgtttcgcaa 271  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  38758268 caatttcaaaaggttaagtaaatacaagggttgtttcgcaa 38758308  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 5975510 - 5975564
Alignment:
Q  137 agtccctctactaaccagttgtcaactcatcaa-tgccacatattggtccgttaa 190  Q
    ||||||||||||||||||||| ||| ||||||| ||||| |||||||||||||||    
T  5975510 agtccctctactaaccagttgccaattcatcaagtgccatatattggtccgttaa 5975564  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 13645214 - 13645260
Alignment:
Q  18 atgaagaagagagaaagaacatagtgaggaacaaggtggaaagaata 64  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||    
T  13645214 atgaagaagagagaaagaacatagtgaggaagaaggtggaaagaata 13645260  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 137 - 195
Target Start/End: Complemental strand, 1677186 - 1677127
Alignment:
Q  137 agtccctctactaaccagttgtcaactcatca-atgccacatattggtccgttaatcagc 195  Q
    |||||||||| |||||| |||||||||||||| |||||||||||||||||||||| ||||    
T  1677186 agtccctctaataaccaattgtcaactcatcatatgccacatattggtccgttaaccagc 1677127  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 1677305 - 1677259
Alignment:
Q  18 atgaagaagagagaaagaacatagtgaggaacaaggtggaaagaata 64  Q
    ||||||||||||||||||||||||||||||| |||||||||| ||||    
T  1677305 atgaagaagagagaaagaacatagtgaggaagaaggtggaaataata 1677259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 209 - 271
Target Start/End: Complemental strand, 3149392 - 3149330
Alignment:
Q  209 gacggaaacagctggccgagaacaatgtcaaaaggttaagtaaatacaagggttgtttcgcaa 271  Q
    |||||||| ||  ||| |||| |||| ||||||||||||||||||||||||||||||||||||    
T  3149392 gacggaaatagacggcagagaccaatttcaaaaggttaagtaaatacaagggttgtttcgcaa 3149330  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 232 - 336
Target Start/End: Complemental strand, 55196682 - 55196577
Alignment:
Q  232 aatgtcaaaaggttaagtaaatacaagggttgtttcgcaatnnnnnnn-gatacatagactaaaacaaaaaatgcacgaacttgcgaggacgtttttctt 330  Q
    |||||||||  |||||||||||||| ||||||||||||||         ||||||| ||||||||| |||||||| ||||||| | ||||| ||||||||    
T  55196682 aatgtcaaagtgttaagtaaatacaggggttgtttcgcaacaaaaaaaagatacatggactaaaaccaaaaatgcgcgaacttacaaggacctttttctt 55196583  T
Q  331 atttaa 336  Q
    ||||||    
T  55196582 atttaa 55196577  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 26538698 - 26538746
Alignment:
Q  18 atgaagaagagagaaagaacatagtgaggaacaaggtggaaagaatagg 66  Q
    ||||||||||| ||||||||| ||||||||| |||||||||| ||||||    
T  26538698 atgaagaagagggaaagaacagagtgaggaagaaggtggaaaaaatagg 26538746  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 137 - 199
Target Start/End: Original strand, 26538804 - 26538867
Alignment:
Q  137 agtccctctactaaccagttgtcaactcatcaa-tgccacatattggtccgttaatcagcaatg 199  Q
    ||||||||||||||||||||| ||||||||||| ||| || |||||||| ||||  ||||||||    
T  26538804 agtccctctactaaccagttgccaactcatcaagtgctacctattggtcagttagccagcaatg 26538867  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 236 - 271
Target Start/End: Original strand, 27662566 - 27662601
Alignment:
Q  236 tcaaaaggttaagtaaatacaagggttgtttcgcaa 271  Q
    ||||||||||||||||||||||||||||||| ||||    
T  27662566 tcaaaaggttaagtaaatacaagggttgttttgcaa 27662601  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 55196898 - 55196852
Alignment:
Q  18 atgaagaagagagaaagaacatagtgaggaacaaggtggaaagaata 64  Q
    ||||||||||||| || |||||||||||||| |||||||||| ||||    
T  55196898 atgaagaagagaggaataacatagtgaggaataaggtggaaataata 55196852  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 199
Target Start/End: Original strand, 13645335 - 13645399
Alignment:
Q  137 agtccctctactaaccag-ttgtcaactcatcaa-tgccacatattggtccgttaatcagcaatg 199  Q
    |||||||||||||||||| || |||||||||||| ||||||||||| | ||||||  ||||||||    
T  13645335 agtccctctactaaccagtttatcaactcatcaagtgccacatattagcccgttagccagcaatg 13645399  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 271
Target Start/End: Original strand, 26538899 - 26538939
Alignment:
Q  231 caatgtcaaaaggttaagtaaatacaagggttgtttcgcaa 271  Q
    ||||||||||||||||| ||||||||| |||| ||||||||    
T  26538899 caatgtcaaaaggttaaataaatacaaaggttatttcgcaa 26538939  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 232 - 336
Target Start/End: Original strand, 7274603 - 7274707
Alignment:
Q  232 aatgtcaaaaggttaagtaaatacaagggttgtttcgcaatnnnnnnngatacatagactaaaacaaaaaatgcacgaacttgcgaggacgtttttctta 331  Q
    |||||||||| |||||||||||||| ||||||||||||||        ||||||   ||||||||||||||||| ||||||| |  |||| |||||||||    
T  7274603 aatgtcaaaatgttaagtaaatacaggggttgtttcgcaacaaaaaaagatacaggaactaaaacaaaaaatgcgcgaacttacagggacctttttctta 7274702  T
Q  332 tttaa 336  Q
    |||||    
T  7274703 tttaa 7274707  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 7274388 - 7274434
Alignment:
Q  18 atgaagaagagagaaagaacatagtgaggaacaaggtggaaagaata 64  Q
    |||||||||||||||| |||||||||||||| |||||||||| ||||    
T  7274388 atgaagaagagagaaataacatagtgaggaagaaggtggaaataata 7274434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 272
Target Start/End: Complemental strand, 45447109 - 45447073
Alignment:
Q  236 tcaaaaggttaagtaaatacaagggttgtttcgcaat 272  Q
    |||||| |||||| |||||||||||||||||||||||    
T  45447109 tcaaaaagttaagaaaatacaagggttgtttcgcaat 45447073  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 137 - 336
Target Start/End: Complemental strand, 20946064 - 20945864
Alignment:
Q  137 agtccctctactaaccagttgtcaactcatca-atgccacatattggtccgttaatcagcaatgtannnnnnngacggaaacagctggccgagaacaatg 235  Q
    |||||||||| |||||| ||| |||||||||| |||||||||||| |||||||| ||||||| |         ||||||||| |   || | ||  ||||    
T  20946064 agtccctctaataaccaattgccaactcatcatatgccacatattagtccgttagtcagcaaagcgtttttttgacggaaacggacagcagggacgaatg 20945965  T
Q  236 tcaaaaggttaagtaaatacaagggttgtttcgcaatnnnnnnngatacatagactaaaacaaaaaatgcacgaacttgcgaggacgtttttcttattta 335  Q
     ||||| |||||||||||| | || |||||||||||        |||||| ||||||||||||||||||| ||||||| | | ||| |||||||||||||    
T  20945964 ccaaaatgttaagtaaatatagggattgtttcgcaacaaaaaaagatacaaagactaaaacaaaaaatgcgcgaacttacaaagacctttttcttattta 20945865  T
Q  336 a 336  Q
    |    
T  20945864 a 20945864  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 231 - 271
Target Start/End: Complemental strand, 11148458 - 11148418
Alignment:
Q  231 caatgtcaaaaggttaagtaaatacaagggttgtttcgcaa 271  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  11148458 caatttcaaaaggttaagtaaatacaagggttgtttcgcaa 11148418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 20946183 - 20946137
Alignment:
Q  18 atgaagaagagagaaagaacatagtgaggaacaaggtggaaagaata 64  Q
    |||||||||||||||| |||||||||||||| |||||||||| ||||    
T  20946183 atgaagaagagagaaataacatagtgaggaagaaggtggaaataata 20946137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 271
Target Start/End: Complemental strand, 41245964 - 41245926
Alignment:
Q  233 atgtcaaaaggttaagtaaatacaagggttgtttcgcaa 271  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  41245964 atgtcaaaaggttaagtaaatataagggttgtttcgcaa 41245926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 336
Target Start/End: Complemental strand, 2671649 - 2671544
Alignment:
Q  232 aatgtcaaaaggttaagtaaatacaagggttgtttcgcaa-tnnnnnnngatacatagactaaaacaaaaaatgcacgaacttgcgaggacgtttttctt 330  Q
    |||||||||| |||||||||||||| ||||||||||||||         ||||||  ||||||||| |||||||| ||||||| |  |||| ||||||||    
T  2671649 aatgtcaaaatgttaagtaaatacaggggttgtttcgcaacaaaaaaaagatacagggactaaaaccaaaaatgcgcgaacttacagggacctttttctt 2671550  T
Q  331 atttaa 336  Q
    ||||||    
T  2671549 atttaa 2671544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 271
Target Start/End: Original strand, 34539749 - 34539789
Alignment:
Q  231 caatgtcaaaaggttaagtaaatacaagggttgtttcgcaa 271  Q
    |||| ||||||||||||||||||| ||||||||||||||||    
T  34539749 caatttcaaaaggttaagtaaatataagggttgtttcgcaa 34539789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 271
Target Start/End: Original strand, 28167276 - 28167321
Alignment:
Q  226 gagaacaatgtcaaaaggttaagtaaatacaagggttgtttcgcaa 271  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||    
T  28167276 gagaccaatttcaaaaggttaagtaaatacaagggttgtttcgcaa 28167321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 5696106 - 5696152
Alignment:
Q  18 atgaagaagagagaaagaacatagtgaggaacaaggtggaaagaata 64  Q
    |||||||||||||||| |||||||||||||| |||||||||| ||||    
T  5696106 atgaagaagagagaaataacatagtgaggaagaaggtggaaataata 5696152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 209 - 272
Target Start/End: Original strand, 44906064 - 44906127
Alignment:
Q  209 gacggaaacagctggccgagaacaatgtcaaaaggttaagtaaatacaagggttgtttcgcaat 272  Q
    |||||||| ||  ||| |||| |||| |||||||||||||||||||||| | ||||||||||||    
T  44906064 gacggaaatagacggcagagaccaatttcaaaaggttaagtaaatacaaagattgtttcgcaat 44906127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 30546072 - 30546032
Alignment:
Q  19 tgaagaagagagaaagaacatagtgaggaacaaggtggaaa 59  Q
    ||||||||||||||| |||| ||||||||| ||||||||||    
T  30546072 tgaagaagagagaaataacagagtgaggaagaaggtggaaa 30546032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 231 - 271
Target Start/End: Original strand, 6535593 - 6535633
Alignment:
Q  231 caatgtcaaaaggttaagtaaatacaagggttgtttcgcaa 271  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  6535593 caatttcaaaaggttaagtaaatacaagggttgtttcgcaa 6535633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 43882376 - 43882330
Alignment:
Q  18 atgaagaagagagaaagaacatagtgaggaacaaggtggaaagaata 64  Q
    |||||||||||||||| |||||||||||||| |||||||||| ||||    
T  43882376 atgaagaagagagaaataacatagtgaggaagaaggtggaaataata 43882330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 271
Target Start/End: Complemental strand, 13223021 - 13222981
Alignment:
Q  231 caatgtcaaaaggttaagtaaatacaagggttgtttcgcaa 271  Q
    |||| |||||||||||| |||||||||||||||||||||||    
T  13223021 caatttcaaaaggttaaataaatacaagggttgtttcgcaa 13222981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 271
Target Start/End: Complemental strand, 1134258 - 1134208
Alignment:
Q  221 tggccgagaacaatgtcaaaaggttaagtaaatacaagggttgtttcgcaa 271  Q
    |||| |||| |||| ||||||| |||||| |||||||||||||||||||||    
T  1134258 tggcagagaccaatttcaaaagattaagtgaatacaagggttgtttcgcaa 1134208  T

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