View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5053_high_11 (Length: 387)

Name: NF5053_high_11
Description: NF5053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5053_high_11
NF5053_high_11
[»] chr3 (18 HSPs)
chr3 (1-129)||(8400810-8400938)
chr3 (1-128)||(7417754-7417881)
chr3 (1-128)||(35198721-35198848)
chr3 (3-128)||(22855843-22855968)
chr3 (1-128)||(34824512-34824639)
chr3 (4-129)||(48077993-48078118)
chr3 (1-101)||(50823681-50823781)
chr3 (1-101)||(50852079-50852179)
chr3 (3-117)||(55467966-55468080)
chr3 (1-116)||(52545289-52545404)
chr3 (1-113)||(43334103-43334215)
chr3 (6-99)||(50726051-50726144)
chr3 (6-99)||(50786704-50786797)
chr3 (1-69)||(29635883-29635951)
chr3 (1-55)||(22371778-22371832)
chr3 (48-129)||(39438915-39438996)
chr3 (7-110)||(42876189-42876292)
chr3 (1-37)||(30534951-30534987)
[»] chr4 (20 HSPs)
chr4 (1-128)||(51066449-51066576)
chr4 (1-128)||(8740404-8740531)
chr4 (1-128)||(39863827-39863954)
chr4 (1-128)||(46494447-46494574)
chr4 (1-128)||(50905704-50905831)
chr4 (1-130)||(36192496-36192624)
chr4 (1-128)||(7173634-7173761)
chr4 (4-122)||(32139126-32139244)
chr4 (1-104)||(51714014-51714117)
chr4 (27-117)||(2294785-2294875)
chr4 (5-105)||(30970437-30970537)
chr4 (1-55)||(29576444-29576498)
chr4 (6-51)||(4080606-4080651)
chr4 (4-73)||(50399694-50399763)
chr4 (4-56)||(55231715-55231767)
chr4 (30-90)||(47627071-47627133)
chr4 (89-128)||(51066205-51066244)
chr4 (8-89)||(22423371-22423452)
chr4 (5-58)||(41523423-41523476)
chr4 (1-69)||(2570216-2570284)
[»] chr8 (17 HSPs)
chr8 (3-131)||(19723264-19723392)
chr8 (1-128)||(11403957-11404084)
chr8 (6-128)||(4840096-4840218)
chr8 (8-128)||(27881044-27881164)
chr8 (8-128)||(28021225-28021345)
chr8 (1-129)||(32296688-32296816)
chr8 (1-129)||(22711464-22711592)
chr8 (1-128)||(11610236-11610363)
chr8 (1-128)||(24475045-24475172)
chr8 (1-127)||(28739610-28739736)
chr8 (1-103)||(29767169-29767269)
chr8 (1-129)||(30682794-30682922)
chr8 (1-66)||(17095568-17095633)
chr8 (1-55)||(21355033-21355087)
chr8 (1-51)||(36261679-36261729)
chr8 (5-104)||(41553265-41553364)
chr8 (57-127)||(6097521-6097591)
[»] scaffold0021 (1 HSPs)
scaffold0021 (1-128)||(107740-107867)
[»] chr7 (17 HSPs)
chr7 (1-128)||(35109647-35109774)
chr7 (1-128)||(38265286-38265413)
chr7 (1-128)||(34721790-34721917)
chr7 (1-128)||(16059402-16059529)
chr7 (1-117)||(41151139-41151256)
chr7 (1-128)||(21577147-21577274)
chr7 (6-128)||(18116998-18117120)
chr7 (9-125)||(45278411-45278527)
chr7 (1-128)||(38405203-38405330)
chr7 (1-128)||(11216725-11216852)
chr7 (5-90)||(12472115-12472200)
chr7 (4-125)||(48176359-48176479)
chr7 (1-71)||(245313-245383)
chr7 (1-66)||(37095259-37095324)
chr7 (36-128)||(40038621-40038713)
chr7 (1-52)||(28407540-28407591)
chr7 (1-83)||(23028684-23028766)
[»] chr5 (6 HSPs)
chr5 (1-130)||(20983052-20983181)
chr5 (1-129)||(17064278-17064406)
chr5 (1-100)||(37976530-37976633)
chr5 (1-118)||(41910792-41910907)
chr5 (32-128)||(35237103-35237199)
chr5 (154-195)||(31638152-31638193)
[»] chr2 (23 HSPs)
chr2 (1-128)||(40155996-40156123)
chr2 (1-128)||(44650349-44650476)
chr2 (1-131)||(5039373-5039503)
chr2 (1-129)||(6672842-6672970)
chr2 (1-128)||(10745281-10745408)
chr2 (1-128)||(17136343-17136470)
chr2 (1-128)||(7860195-7860322)
chr2 (1-131)||(25987711-25987841)
chr2 (1-128)||(30372729-30372856)
chr2 (1-91)||(45137019-45137109)
chr2 (1-102)||(36836378-36836479)
chr2 (1-128)||(36380181-36380308)
chr2 (30-128)||(2357153-2357251)
chr2 (3-112)||(21637869-21637978)
chr2 (5-128)||(2754104-2754227)
chr2 (8-130)||(26690108-26690230)
chr2 (4-117)||(3200849-3200961)
chr2 (4-92)||(33066582-33066670)
chr2 (51-129)||(2098939-2099017)
chr2 (5-61)||(558492-558548)
chr2 (1-128)||(21487106-21487231)
chr2 (3-104)||(13047207-13047303)
chr2 (14-69)||(20961496-20961551)
[»] chr1 (16 HSPs)
chr1 (1-128)||(30054491-30054618)
chr1 (4-129)||(20014413-20014538)
chr1 (1-128)||(30370109-30370236)
chr1 (1-128)||(45323962-45324089)
chr1 (1-125)||(21090074-21090198)
chr1 (1-129)||(12025136-12025264)
chr1 (5-104)||(4573359-4573458)
chr1 (1-129)||(33763303-33763431)
chr1 (38-128)||(15034411-15034501)
chr1 (1-97)||(30850889-30850985)
chr1 (9-72)||(44438607-44438670)
chr1 (1-59)||(22024128-22024186)
chr1 (1-116)||(35617948-35618058)
chr1 (6-55)||(14498133-14498182)
chr1 (1-40)||(35371794-35371833)
chr1 (1-58)||(33762589-33762646)
[»] chr6 (9 HSPs)
chr6 (1-128)||(35163799-35163926)
chr6 (1-116)||(19686876-19686991)
chr6 (5-128)||(2711787-2711910)
chr6 (30-125)||(14496311-14496406)
chr6 (1-61)||(20685348-20685408)
chr6 (29-128)||(14505600-14505698)
chr6 (1-61)||(17948703-17948763)
chr6 (1-57)||(15070152-15070208)
chr6 (4-66)||(24336633-24336695)
[»] scaffold0691 (1 HSPs)
scaffold0691 (1-129)||(7018-7142)


Alignment Details
Target: chr3 (Bit Score: 105; Significance: 2e-52; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 8400938 - 8400810
Alignment:
Q  1 tcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctt 100  Q
    ||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  8400938 tcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcactagcggggctcgaacccgggttctctcggattcaagacctgtctt 8400839  T
Q  101 tttatcactagaccaagtctttggagttt 129  Q
    |||| |||||||||||| |||||||||||    
T  8400838 tttaccactagaccaagcctttggagttt 8400810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 7417881 - 7417754
Alignment:
Q  1 tcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctt 100  Q
    ||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  7417881 tcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcactagcggggctcgaacccgggttctctcggattcaagacctgtctt 7417782  T
Q  101 tttatcactagaccaagtctttggagtt 128  Q
    |||| |||||||||||| ||||||||||    
T  7417781 tttaccactagaccaagcctttggagtt 7417754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 35198848 - 35198721
Alignment:
Q  1 tcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctt 100  Q
    ||||||||||||||||||||||||  || ||||||||||||| || |||||||| ||| || ||||||||||||||||||||||||||||||||||||||    
T  35198848 tcgggctcaaagagcacttacaaaggtatttacatttacctccctgcaaaggcattagtggggctcgaacccgggttctctcggattcaagacctgtctt 35198749  T
Q  101 tttatcactagaccaagtctttggagtt 128  Q
    |||| |||||||||||| ||||| ||||    
T  35198748 tttaccactagaccaagcctttgaagtt 35198721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 3 - 128
Target Start/End: Complemental strand, 22855968 - 22855843
Alignment:
Q  3 gggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttt 102  Q
    ||||| ||||||||||||||||  |||||||||||||||| |||||||| ||||||||| ||||||||| ||||||||||| ||| ||||||||||||||    
T  22855968 gggcttaaagagcacttacaaaggtaattacatttacctccctccaaagacactagcggggctcgaacctgggttctctcgaatttaagacctgtctttt 22855869  T
Q  103 tatcactagaccaagtctttggagtt 128  Q
    || |||||||||||  ||||||||||    
T  22855868 taccactagaccaaacctttggagtt 22855843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 34824639 - 34824512
Alignment:
Q  1 tcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctt 100  Q
    ||||| |||||||||||||||||| ||||||||||||||||| || ||||||||||| |||  ||||||| | ||||||||||||||||||| || ||||    
T  34824639 tcgggatcaaagagcacttacaaagataattacatttacctcccttcaaaggcactaacgggactcgaactcaggttctctcggattcaagatctatctt 34824540  T
Q  101 tttatcactagaccaagtctttggagtt 128  Q
    |||| ||||||||||| |||||||||||    
T  34824539 tttaccactagaccaaatctttggagtt 34824512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 4 - 129
Target Start/End: Original strand, 48077993 - 48078118
Alignment:
Q  4 ggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtcttttt 103  Q
    ||||||||||||||||||||| ||| ||||||||||||  ||||||||||||||| |  ||||||||||| ||||||||| |||||||||||||| ||||    
T  48077993 ggctcaaagagcacttacaaagatatttacatttaccttcctccaaaggcactagtgaggctcgaacccgagttctctcgaattcaagacctgtcatttt 48078092  T
Q  104 atcactagaccaagtctttggagttt 129  Q
    | |||||||||||| ||||| |||||    
T  48078093 accactagaccaagcctttgaagttt 48078118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 50823781 - 50823681
Alignment:
Q  1 tcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctt 100  Q
    ||||||||||||||||||||||||  |||||||||||||||| |||||||||||||| |||  ||||||||||| |||||||||||||||||| ||||||    
T  50823781 tcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcactaacgggactcgaacccggattctctcggattcaagacttgtctt 50823682  T
Q  101 t 101  Q
    |    
T  50823681 t 50823681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 50852079 - 50852179
Alignment:
Q  1 tcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctt 100  Q
    ||||||||||||||||||||||||  |||||||||||||||| |||||||||||||| |||  ||||||||||| |||||||||||||||||| ||||||    
T  50852079 tcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcactaacgggactcgaacccggattctctcggattcaagacttgtctt 50852178  T
Q  101 t 101  Q
    |    
T  50852179 t 50852179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 3 - 117
Target Start/End: Complemental strand, 55468080 - 55467966
Alignment:
Q  3 gggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttt 102  Q
    ||||||||||||||||||||||  || ||||||||||||| ||||||| ||| ||| || |||||||||||| |||||||| ||||||||| |||| |||    
T  55468080 gggctcaaagagcacttacaaaggtatttacatttacctccctccaaacgcattagtggggctcgaacccggattctctcgaattcaagacatgtcattt 55467981  T
Q  103 tatcactagaccaag 117  Q
    || ||||||||||||    
T  55467980 taccactagaccaag 55467966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 52545404 - 52545289
Alignment:
Q  1 tcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctt 100  Q
    |||||||||||||  |||||||||  || ||||||||||||| ||  |||||||||||||| |||||||||||  || |||||||||||||||||||| |    
T  52545404 tcgggctcaaagactacttacaaaagtatttacatttacctccctttaaaggcactagcggggctcgaacccgaattttctcggattcaagacctgtcat 52545305  T
Q  101 tttatcactagaccaa 116  Q
    |||||||| |||||||    
T  52545304 tttatcaccagaccaa 52545289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 43334103 - 43334215
Alignment:
Q  1 tcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctt 100  Q
    ||||||||||| ||||||||||||  || ||||||||||||| |||| ||| ||||||||| |||||||| ||||||||||||||||||| || |||| |    
T  43334103 tcgggctcaaatagcacttacaaaagtatttacatttacctccctcccaagacactagcggggctcgaactcgggttctctcggattcaaaacttgtcat 43334202  T
Q  101 tttatcactagac 113  Q
    |||| | ||||||    
T  43334203 tttacctctagac 43334215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 6 - 99
Target Start/End: Original strand, 50726051 - 50726144
Alignment:
Q  6 ctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtct 99  Q
    |||||| || |||||||||  |||||| ||||||||  |||||||| ||||| ||| |||||||||||  ||||||||||||||||||||||||    
T  50726051 ctcaaaaagaacttacaaaagtaattatatttaccttcctccaaagacactaacggggctcgaacccgaattctctcggattcaagacctgtct 50726144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 6 - 99
Target Start/End: Complemental strand, 50786797 - 50786704
Alignment:
Q  6 ctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtct 99  Q
    |||||| || |||||||||  |||||| ||||||||  |||||||| ||||| ||| |||||||||||  ||||||||||||||||||||||||    
T  50786797 ctcaaaaagaacttacaaaagtaattatatttaccttcctccaaagacactaacggggctcgaacccgaattctctcggattcaagacctgtct 50786704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 29635951 - 29635883
Alignment:
Q  1 tcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaa 69  Q
    ||||||| ||||||||||||||||  |||||||||||||||| || ||||||||||||||  |||||||    
T  29635951 tcgggcttaaagagcacttacaaaggtaattacatttacctcccttcaaaggcactagcgaggctcgaa 29635883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 22371778 - 22371832
Alignment:
Q  1 tcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcac 55  Q
    ||||| ||||||||||||||||||  |||||||||||||||| ||||||||||||    
T  22371778 tcgggttcaaagagcacttacaaaggtaattacatttacctccctccaaaggcac 22371832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 129
Target Start/End: Original strand, 39438915 - 39438996
Alignment:
Q  48 aaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagttt 129  Q
    |||||||||||||||  | ||||| || ||||||||||||||||| ||||||||||| ||||| | |||| ||||| |||||    
T  39438915 aaaggcactagcggaatttgaacctggattctctcggattcaagatctgtctttttaacactatagcaagcctttgaagttt 39438996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 7 - 110
Target Start/End: Complemental strand, 42876292 - 42876189
Alignment:
Q  7 tcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatc 106  Q
    ||||||||||||||||||  ||||||||||||||||  || |||| ||||||  | |||||||| || | || |||| || ||||| || |||||||| |    
T  42876292 tcaaagagcacttacaaaggtaattacatttacctccatctaaagacactagtcgggctcgaactcgagatccctcgaatacaagatctatctttttacc 42876193  T
Q  107 acta 110  Q
    ||||    
T  42876192 acta 42876189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 30534951 - 30534987
Alignment:
Q  1 tcgggctcaaagagcacttacaaatataattacattt 37  Q
    ||||||||||||||||||||||||  |||||||||||    
T  30534951 tcgggctcaaagagcacttacaaaggtaattacattt 30534987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 104; Significance: 9e-52; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 51066576 - 51066449
Alignment:
Q  1 tcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctt 100  Q
    ||||||||||||||||||||||||  |||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  51066576 tcgggctcaaagagcacttacaaaggtaattatatttacctccctccaaaggcactagcggagctcgaacccgagttctctcggattcaagacctgtctt 51066477  T
Q  101 tttatcactagaccaagtctttggagtt 128  Q
    |||| |||||||||||||||||||||||    
T  51066476 tttaccactagaccaagtctttggagtt 51066449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 8740531 - 8740404
Alignment:
Q  1 tcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctt 100  Q
    ||||||||||||||||||||||||  || ||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  8740531 tcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggcactagcggggctcgaacccgggatctctcggattcaagacctgtctt 8740432  T
Q  101 tttatcactagaccaagtctttggagtt 128  Q
    |||| |||||||||||| ||||||||||    
T  8740431 tttaccactagaccaagcctttggagtt 8740404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 39863827 - 39863954
Alignment:
Q  1 tcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctt 100  Q
    ||||| ||||||||||||||||||  ||||||||||||| || |||||||||||||||||| |  |||||||||||||||||||||||||||||||||||    
T  39863827 tcgggttcaaagagcacttacaaaggtaattacatttacttccctccaaaggcactagcggggtccgaacccgggttctctcggattcaagacctgtctt 39863926  T
Q  101 tttatcactagaccaagtctttggagtt 128  Q
    |||| |||||||||||| ||||||||||    
T  39863927 tttaccactagaccaagcctttggagtt 39863954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 46494447 - 46494574
Alignment:
Q  1 tcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctt 100  Q
    ||||||||||||||||||||||||  || ||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||| |    
T  46494447 tcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggcactagtggggctcgaacccgggttctctcggattcaagacctgtcat 46494546  T
Q  101 tttatcactagaccaagtctttggagtt 128  Q
    |||| |||||||||||  ||||||||||    
T  46494547 tttaccactagaccaaacctttggagtt 46494574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 50905831 - 50905704
Alignment:
Q  1 tcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctt 100  Q
    |||| |||||||||||| |||||| ||||||||||||||||| |||||||||||||||||| |||||||||| | |||||||||||||||||||||||||    
T  50905831 tcggactcaaagagcacctacaaagataattacatttacctctctccaaaggcactagcggggctcgaacccagattctctcggattcaagacctgtctt 50905732  T
Q  101 tttatcactagaccaagtctttggagtt 128  Q
    |||| |||||||| ||  ||||||||||    
T  50905731 tttaccactagactaaacctttggagtt 50905704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 36192624 - 36192496
Alignment:
Q  1 tcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctt 100  Q
    |||||||||||||||| |||||||  |||||||||||||||| ||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||    
T  36192624 tcgggctcaaagagcatttacaaaagtaattacatttacctccctccaaaggcactagtggggctcgaacccgggttctctcgaattcaagacctgtctt 36192525  T
Q  101 tttatcactagaccaagtctttggagtttt 130  Q
    |||| ||| |||| ||  ||||||||||||    
T  36192524 tttaccac-agactaaacctttggagtttt 36192496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 7173634 - 7173761
Alignment:
Q  1 tcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctt 100  Q
    ||||||||||||||||||||||||  || | |||||||||||  |||||||||||||||||  || |||||  ||||||||||||||||||||||||| |    
T  7173634 tcgggctcaaagagcacttacaaaggtattgacatttacctccttccaaaggcactagcgggtcttgaacctaggttctctcggattcaagacctgtcat 7173733  T
Q  101 tttatcactagaccaagtctttggagtt 128  Q
    |||| |||||||||||| ||||||||||    
T  7173734 tttaccactagaccaagcctttggagtt 7173761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 4 - 122
Target Start/End: Complemental strand, 32139244 - 32139126
Alignment:
Q  4 ggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtcttttt 103  Q
    |||||||||| ||||||||||  |||||||||||||||| |||||||| ||||||||| | |||||||| |||||||||||||||| |||||||| ||||    
T  32139244 ggctcaaagaacacttacaaaggtaattacatttacctccctccaaagacactagcggggttcgaacccaggttctctcggattcatgacctgtcctttt 32139145  T
Q  104 atcactagaccaagtcttt 122  Q
    | |||||||||||| ||||    
T  32139144 accactagaccaagccttt 32139126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 51714014 - 51714117
Alignment:
Q  1 tcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctt 100  Q
    ||||||||||||||||||||||||  || ||| ||||||||| || |||||||||||| || |||||||||||||||||||||||||||||||||||| |    
T  51714014 tcgggctcaaagagcacttacaaaggtatttatatttacctcccttcaaaggcactagtggggctcgaacccgggttctctcggattcaagacctgtcat 51714113  T
Q  101 ttta 104  Q
    ||||    
T  51714114 ttta 51714117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 27 - 117
Target Start/End: Original strand, 2294785 - 2294875
Alignment:
Q  27 taattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaag 117  Q
    |||||||||||||||  ||||||||||||||||| | |||||||||| ||||||||| |||||||||||||||||||| ||||||||||||    
T  2294785 taattacatttaccttcctccaaaggcactagcgaaactcgaacccgagttctctcgaattcaagacctgtctttttaccactagaccaag 2294875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 5 - 105
Target Start/End: Original strand, 30970437 - 30970537
Alignment:
Q  5 gctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtcttttta 104  Q
    ||||||||||||||||||||  || ||||||||||||| || |||||||||||| |  |||||||||||| ||||||||||||||||||||||| |||||    
T  30970437 gctcaaagagcacttacaaaggtatttacatttacctcccttcaaaggcactagtgaggctcgaacccggattctctcggattcaagacctgtcatttta 30970536  T
Q  105 t 105  Q
    |    
T  30970537 t 30970537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 29576498 - 29576444
Alignment:
Q  1 tcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcac 55  Q
    ||||||||||||||||||||||||  || ||||||||||||| ||||||||||||    
T  29576498 tcgggctcaaagagcacttacaaagttatttacatttacctccctccaaaggcac 29576444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 6 - 51
Target Start/End: Original strand, 4080606 - 4080651
Alignment:
Q  6 ctcaaagagcacttacaaatataattacatttacctcactccaaag 51  Q
    ||||||||||| |||||||| |||||||||||||||| ||||||||    
T  4080606 ctcaaagagcatttacaaatgtaattacatttacctccctccaaag 4080651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 50399694 - 50399763
Alignment:
Q  4 ggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccg 73  Q
    |||||||||| ||||||||||  || ||||||||||||  ||||||  |||||||||| |||||||||||    
T  50399694 ggctcaaagaacacttacaaaggtatttacatttaccttcctccaagagcactagcggggctcgaacccg 50399763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 56
Target Start/End: Complemental strand, 55231767 - 55231715
Alignment:
Q  4 ggctcaaagagcacttacaaatataattacatttacctcactccaaaggcact 56  Q
    |||||||||||||||||||||  || ||||||||||||| || ||||||||||    
T  55231767 ggctcaaagagcacttacaaaagtatttacatttacctcccttcaaaggcact 55231715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 30 - 90
Target Start/End: Original strand, 47627071 - 47627133
Alignment:
Q  30 ttacatttacctcactccaaaggcactagcggagctc--gaacccgggttctctcggattcaa 90  Q
    ||||||||||||| || |||||||||||| || ||||  ||| ||||||||||||||||||||    
T  47627071 ttacatttacctcccttcaaaggcactagtggggctctcgaatccgggttctctcggattcaa 47627133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 89 - 128
Target Start/End: Complemental strand, 51066244 - 51066205
Alignment:
Q  89 aagacctgtctttttatcactagaccaagtctttggagtt 128  Q
    ||||| |||||||||| |||||||||||||||||||||||    
T  51066244 aagacttgtctttttaccactagaccaagtctttggagtt 51066205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 22423452 - 22423371
Alignment:
Q  8 caaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattca 89  Q
    |||||| ||||||||||  || ||||||||||||| ||||||||| |||| | | ||||||| ||| | |||||| ||||||    
T  22423452 caaagaacacttacaaaagtatttacatttacctccctccaaaggtactaaccgggctcgaatccgagatctctcagattca 22423371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 58
Target Start/End: Complemental strand, 41523476 - 41523423
Alignment:
Q  5 gctcaaagagcacttacaaatataattacatttacctcactccaaaggcactag 58  Q
    |||||||||||||||| |||  || ||||||||||||| |||||||| ||||||    
T  41523476 gctcaaagagcacttataaaggtatttacatttacctccctccaaagacactag 41523423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 2570284 - 2570216
Alignment:
Q  1 tcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaa 69  Q
    |||| |||||||| || ||| ||  ||| ||| ||||||||| |||||||||||| |||||||||||||    
T  2570284 tcggactcaaagaacatttataatgatatttatatttacctccctccaaaggcaccagcggagctcgaa 2570216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 101; Significance: 6e-50; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 3 - 131
Target Start/End: Complemental strand, 19723392 - 19723264
Alignment:
Q  3 gggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttt 102  Q
    ||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  19723392 gggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcactagcggggctcgaacccgggttctctcggattcaagacctgtctttt 19723293  T
Q  103 tatcactagaccaagtctttggagttttt 131  Q
    || |||||||||||  |||||||||||||    
T  19723292 taccactagaccaaacctttggagttttt 19723264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 11404084 - 11403957
Alignment:
Q  1 tcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctt 100  Q
    ||||||||||||||||||||||||  || ||||||||||||| |||||||| ||||||||  |||||||||| |||||||||| |||||||||||||| |    
T  11404084 tcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaagacactagcgaggctcgaacccaggttctctcgaattcaagacctgtcat 11403985  T
Q  101 tttatcactagaccaagtctttggagtt 128  Q
    |||| |||||||||||||||||||||||    
T  11403984 tttaccactagaccaagtctttggagtt 11403957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 6 - 128
Target Start/End: Complemental strand, 4840218 - 4840096
Alignment:
Q  6 ctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttat 105  Q
    ||||||||||||||||||   |||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||     
T  4840218 ctcaaagagcacttacaatggtaatgacatttacctccctccaaaggcactagcggggctcgaacccgggttctctcggattcaaaacctatctttttac 4840119  T
Q  106 cactagaccaagtctttggagtt 128  Q
    |||||||||||| ||||||||||    
T  4840118 cactagaccaagcctttggagtt 4840096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 8 - 128
Target Start/End: Original strand, 27881044 - 27881164
Alignment:
Q  8 caaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatca 107  Q
    |||||||||||||||||  || ||||||||||||| || ||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||| ||    
T  27881044 caaagagcacttacaaaggtatttacatttacctcccttcaaaggcactagcggggctcgaacccgggttctctcagattcaagacctgtcattttacca 27881143  T
Q  108 ctagaccaagtctttggagtt 128  Q
    |||||||||| ||||||||||    
T  27881144 ctagaccaagcctttggagtt 27881164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 8 - 128
Target Start/End: Original strand, 28021225 - 28021345
Alignment:
Q  8 caaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatca 107  Q
    |||||||||||||||||  || ||||||||||||| || ||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||| ||    
T  28021225 caaagagcacttacaaaggtatttacatttacctcccttcaaaggcactagcggggctcgaacccgggttctctcagattcaagacctgtcattttacca 28021324  T
Q  108 ctagaccaagtctttggagtt 128  Q
    |||||||||| ||||||||||    
T  28021325 ctagaccaagcctttggagtt 28021345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 32296688 - 32296816
Alignment:
Q  1 tcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctt 100  Q
    ||||||||||||||||||||||||  |||||||||||||||| || ||||||||||||| | ||| ||||||||||||||||  ||||||||||||||||    
T  32296688 tcgggctcaaagagcacttacaaaggtaattacatttacctcccttcaaaggcactagcagggcttgaacccgggttctctcaaattcaagacctgtctt 32296787  T
Q  101 tttatcactagaccaagtctttggagttt 129  Q
    |||| |||||||||||  |||||||||||    
T  32296788 tttaccactagaccaaacctttggagttt 32296816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 22711592 - 22711464
Alignment:
Q  1 tcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctt 100  Q
    ||||||||||||||||||||||||  || ||||||||||||| ||||||||||| |||  |  ||| |||||| ||||||||||||||||||||||||||    
T  22711592 tcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggcattagttggactcaaacccgagttctctcggattcaagacctgtctt 22711493  T
Q  101 tttatcactagaccaagtctttggagttt 129  Q
    |||| |||||||||||  |||||||||||    
T  22711492 tttaccactagaccaaacctttggagttt 22711464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 11610363 - 11610236
Alignment:
Q  1 tcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctt 100  Q
    ||||||| ||| |||||||||||| ||| ||| ||||||||  |||||||||||||||||  ||||||| ||| | ||||||||||||||||||||||||    
T  11610363 tcgggcttaaacagcacttacaaagatatttatatttacctttctccaaaggcactagcgaggctcgaatccgagatctctcggattcaagacctgtctt 11610264  T
Q  101 tttatcactagaccaagtctttggagtt 128  Q
    |||| |||||||||||  ||||||||||    
T  11610263 tttaccactagaccaaacctttggagtt 11610236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 24475045 - 24475172
Alignment:
Q  1 tcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctt 100  Q
    ||||||||||||| ||||||||||  || ||||||||||||| ||||||||||||||||||||||||||  ||  |||| |||||||||||||||||| |    
T  24475045 tcgggctcaaagaacacttacaaaggtatttacatttacctccctccaaaggcactagcggagctcgaattcgaattctatcggattcaagacctgtcat 24475144  T
Q  101 tttatcactagaccaagtctttggagtt 128  Q
     |||  ||||||||||| ||||||||||    
T  24475145 cttactactagaccaagcctttggagtt 24475172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 28739610 - 28739736
Alignment:
Q  1 tcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctt 100  Q
    ||||||||||||||||||||||||  || |||||||||| |  ||||||||||||||| || ||| |||||| |||||||| | |||||||||||||| |    
T  28739610 tcgggctcaaagagcacttacaaaggtatttacatttactttcctccaaaggcactagtggggcttgaacccaggttctctagaattcaagacctgtcat 28739709  T
Q  101 tttatcactagaccaagtctttggagt 127  Q
    |||| |||||||||||| |||||||||    
T  28739710 tttaccactagaccaagcctttggagt 28739736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 29767269 - 29767169
Alignment:
Q  1 tcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctt 100  Q
    ||||||||||||| ||||||||||  ||||||  |||||||| || ||||||||||||||| |||||| ||||||||||||| |||||||||||||||||    
T  29767269 tcgggctcaaagaacacttacaaaggtaatta--tttacctcccttcaaaggcactagcggggctcgaccccgggttctctcagattcaagacctgtctt 29767172  T
Q  101 ttt 103  Q
    |||    
T  29767171 ttt 29767169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 30682922 - 30682794
Alignment:
Q  1 tcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctt 100  Q
    ||||||||||||| ||||||||||  || ||||||||| ||| |||||||||||| || || |||||||| |||| ||||| | |||||||| ||| | |    
T  30682922 tcgggctcaaagaacacttacaaaagtatttacatttatctctctccaaaggcaccagtggggctcgaacacgggctctcttgaattcaagaactgccat 30682823  T
Q  101 tttatcactagaccaagtctttggagttt 129  Q
    | || |||||||||||| |||||||||||    
T  30682822 tgtaccactagaccaagcctttggagttt 30682794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 17095633 - 17095568
Alignment:
Q  1 tcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctc 66  Q
    |||||||||||||||| |||||||  |||||||||||||||| |||||||||||||||||| ||||    
T  17095633 tcgggctcaaagagcatttacaaaggtaattacatttacctccctccaaaggcactagcggggctc 17095568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 21355033 - 21355087
Alignment:
Q  1 tcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcac 55  Q
    ||||| ||||||||||||||||||  |||||||||||||||| ||||||||||||    
T  21355033 tcgggttcaaagagcacttacaaaggtaattacatttacctccctccaaaggcac 21355087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 36261729 - 36261679
Alignment:
Q  1 tcgggctcaaagagcacttacaaatataattacatttacctcactccaaag 51  Q
    ||||||||||||||||||||||||  |||||||||||||||| ||||||||    
T  36261729 tcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaag 36261679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 41553364 - 41553265
Alignment:
Q  5 gctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtcttttta 104  Q
    ||||||||| ||||||||||  || |||||||||| |  |||||||| || ||| ||  ||||||| |||||||||||| ||||||||||| || |||||    
T  41553364 gctcaaagaacacttacaaaggtatttacatttacgttcctccaaagacattagtgggactcgaactcgggttctctcgaattcaagacctatcatttta 41553265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 127
Target Start/End: Complemental strand, 6097591 - 6097521
Alignment:
Q  57 agcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagt 127  Q
    ||||| |||||||| ||| |||||||| |||||||||||||||||||| ||  ||||||||  ||||||||    
T  6097591 agcggggctcgaactcggattctctcgaattcaagacctgtctttttaccataagaccaagcttttggagt 6097521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 107740 - 107867
Alignment:
Q  1 tcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctt 100  Q
    ||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||    
T  107740 tcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcactagcggggctcgaactcgggttctctcgaattcaagacctgtctt 107839  T
Q  101 tttatcactagaccaagtctttggagtt 128  Q
    |||| |||||||||||||||||||||||    
T  107840 tttaccactagaccaagtctttggagtt 107867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 2e-49; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 35109774 - 35109647
Alignment:
Q  1 tcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctt 100  Q
    ||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  35109774 tcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcactagtggggctcgaacccgggttctctcggattcaagacctgtctt 35109675  T
Q  101 tttatcactagaccaagtctttggagtt 128  Q
    |||| |||||||||||| ||||||||||    
T  35109674 tttaccactagaccaagcctttggagtt 35109647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 38265286 - 38265413
Alignment:
Q  1 tcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctt 100  Q
    ||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  38265286 tcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcactagcggggctcgaacccaggttctctcggattcaagacctgtctt 38265385  T
Q  101 tttatcactagaccaagtctttggagtt 128  Q
    |||| |||||||||||| ||||||||||    
T  38265386 tttaccactagaccaagcctttggagtt 38265413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 34721917 - 34721790
Alignment:
Q  1 tcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctt 100  Q
    ||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||    
T  34721917 tcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcactagcggggcttgaatccgggttctctcggattcaagacctgtctt 34721818  T
Q  101 tttatcactagaccaagtctttggagtt 128  Q
    |||| |||||||||||| ||||||||||    
T  34721817 tttaccactagaccaagcctttggagtt 34721790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 16059402 - 16059529
Alignment:
Q  1 tcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctt 100  Q
    ||||||||| ||||||||||||||  |||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  16059402 tcgggctcagagagcacttacaaaggtaattacatttacctccctgcaaaggcactagcggggctcgaacccgggttctctcggattcaagacctgtctt 16059501  T
Q  101 tttatcactagaccaagtctttggagtt 128  Q
    |||| |||||| ||||| ||||||||||    
T  16059502 tttaccactagtccaagcctttggagtt 16059529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 41151256 - 41151139
Alignment:
Q  1 tcgggctcaaagagcacttacaaata-taattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtct 99  Q
    ||||||||||||||||||||||||   |||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  41151256 tcgggctcaaagagcacttacaaaaggtaattacatttacctccctccaaagacactagcggggctcgaacccgggttctctcggattcaagacctgtct 41151157  T
Q  100 ttttatcactagaccaag 117  Q
    ||||| ||||||||||||    
T  41151156 ttttaccactagaccaag 41151139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 21577147 - 21577274
Alignment:
Q  1 tcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctt 100  Q
    |||| |||||||||||||||||||  || ||||||||||||| ||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||    
T  21577147 tcggactcaaagagcacttacaaaggtatttacatttacctccctccaaaggcattagtggggctcgaacccgggttctctcggattcaagacctgtctt 21577246  T
Q  101 tttatcactagaccaagtctttggagtt 128  Q
    |||| |||||||||||| ||||| ||||    
T  21577247 tttaccactagaccaagcctttgaagtt 21577274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 6 - 128
Target Start/End: Original strand, 18116998 - 18117120
Alignment:
Q  6 ctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttat 105  Q
    |||||||||||| ||||||  |||||||||||||||| ||| |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||     
T  18116998 ctcaaagagcacctacaaaggtaattacatttacctccctctaaaggcactagcgtggctcgaacccgggttctctcggattcaagacctgtctttttac 18117097  T
Q  106 cactagaccaagtctttggagtt 128  Q
    ||||||| |||| ||||||||||    
T  18117098 cactagaacaagcctttggagtt 18117120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 9 - 125
Target Start/End: Complemental strand, 45278527 - 45278411
Alignment:
Q  9 aaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcac 108  Q
    |||||||||||||||| |||||||||||||| || || ||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||| |||    
T  45278527 aaagagcacttacaaagataattacatttacttcccttcaaaggcactagcggggctcgaacccgggttatctcggattcaagacctatctttttaccac 45278428  T
Q  109 tagaccaagtctttgga 125  Q
    ||||||||| |||||||    
T  45278427 tagaccaagactttgga 45278411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 38405203 - 38405330
Alignment:
Q  1 tcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctt 100  Q
    ||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||||  |||||||| ||  |||||||||||||||||||||||||    
T  38405203 tcgggttcaaagagcacttacaaagataattacatttacctccctccaaaggcactagcgaggctcgaactcgaattctctcggattcaagacctgtctt 38405302  T
Q  101 tttatcactagaccaagtctttggagtt 128  Q
    |||| |||||||| ||| ||||| ||||    
T  38405303 tttaccactagacgaagcctttgaagtt 38405330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 11216852 - 11216725
Alignment:
Q  1 tcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctt 100  Q
    ||||||||||||||||||||||||  || ||||||||||||| ||||||||||||||  || |||||||||||||||||||| |||||||||||||||      
T  11216852 tcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggcactaatggggctcgaacccgggttctctcagattcaagacctgtcac 11216753  T
Q  101 tttatcactagaccaagtctttggagtt 128  Q
    |||| |||||||||||  ||||||||||    
T  11216752 tttaccactagaccaaacctttggagtt 11216725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 5 - 90
Target Start/End: Complemental strand, 12472200 - 12472115
Alignment:
Q  5 gctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaa 90  Q
    ||||||||||||||||||||  |||||| ||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||    
T  12472200 gctcaaagagcacttacaaaggtaattatatttacctccctccaaaggcactagtggggctcgaacccgggttctctcggattcaa 12472115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 4 - 125
Target Start/End: Complemental strand, 48176479 - 48176359
Alignment:
Q  4 ggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtcttttt 103  Q
    |||||||| | ||||||||||  || |||||||||||||  ||||||||||||||||| |||||||||||| |||||||||||| |||| ||||||||||    
T  48176479 ggctcaaaaaacacttacaaaagtatttacatttacctccttccaaaggcactagcggggctcgaacccggattctctcggatttaagatctgtcttttt 48176380  T
Q  104 atcactagaccaagtctttgga 125  Q
    | || ||||||||| |||||||    
T  48176379 acca-tagaccaagcctttgga 48176359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 245313 - 245383
Alignment:
Q  1 tcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacc 71  Q
    |||||||||||||||  ||||||| ||||||||||||||||| |||||| ||||||||||| |||||||||    
T  245313 tcgggctcaaagagcgtttacaaagataattacatttacctccctccaagggcactagcggggctcgaacc 245383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 37095259 - 37095324
Alignment:
Q  1 tcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctc 66  Q
    ||||||||||||||||||||||||  |||||||||||||||| |||||||| ||||||||| ||||    
T  37095259 tcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaagacactagcggggctc 37095324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 36 - 128
Target Start/End: Complemental strand, 40038713 - 40038621
Alignment:
Q  36 ttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 128  Q
    ||||||| || ||||||||||| |||  || |||  | ||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||    
T  40038713 ttacctctcttcaaaggcactaacgggacttgaattcaggttctctcagattcaagacctgtctttttaccactagatcaagtctttggagtt 40038621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 28407591 - 28407540
Alignment:
Q  1 tcgggctcaaagagcacttacaaatataattacatttacctcactccaaagg 52  Q
    ||||||||||||||||||||||||  || ||||||||||||| ||| |||||    
T  28407591 tcgggctcaaagagcacttacaaaagtatttacatttacctccctctaaagg 28407540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 23028766 - 23028684
Alignment:
Q  1 tcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcg 83  Q
    ||||| ||||| | |||||| |||  ||||||||||||| || ||| ||||||| ||| |||| |||||||||| ||||||||    
T  23028766 tcgggttcaaaaaacacttataaaggtaattacatttacatccctctaaaggcattagaggagttcgaacccggattctctcg 23028684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 98; Significance: 4e-48; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 20983052 - 20983181
Alignment:
Q  1 tcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctt 100  Q
    ||||||||||||||||||||||||| ||||| |||||||||| |||| ||||||||||||| |||||||||||| |||||| ||||||||||||||||||    
T  20983052 tcgggctcaaagagcacttacaaatgtaattgcatttacctctctccgaaggcactagcggggctcgaacccggattctcttggattcaagacctgtctt 20983151  T
Q  101 tttatcactagaccaagtctttggagtttt 130  Q
    ||||||||||||||||| ||||||||||||    
T  20983152 tttatcactagaccaagcctttggagtttt 20983181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 17064406 - 17064278
Alignment:
Q  1 tcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctt 100  Q
    ||||||| ||||||||||||||||  || ||||||||||||| |||||||||||||||||  |||||||||||||||||||||||||||||||||||| |    
T  17064406 tcgggcttaaagagcacttacaaaggtatttacatttacctccctccaaaggcactagcgaggctcgaacccgggttctctcggattcaagacctgtcat 17064307  T
Q  101 tttatcactagaccaagtctttggagttt 129  Q
    |||| |||||||||||| |||||||||||    
T  17064306 tttaccactagaccaagcctttggagttt 17064278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 37976633 - 37976530
Alignment:
Q  1 tcgggctcaaagagcacttacaaatataattac----atttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctg 96  Q
    ||||||||||| ||||||||||||  || ||||    ||||||||| || |||| |||||||||| |||||||||| |||||||||||||||||||||||    
T  37976633 tcgggctcaaatagcacttacaaaggtatttacattaatttacctcccttcaaatgcactagcggggctcgaacccaggttctctcggattcaagacctg 37976534  T
Q  97 tctt 100  Q
    ||||    
T  37976533 tctt 37976530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 41910907 - 41910792
Alignment:
Q  1 tcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctt 100  Q
    ||||||||||||| ||||||||||  |||||||||||||||| ||||||||  |||| |  | ||| |||||   ||||||| |||||||||||||||||    
T  41910907 tcgggctcaaagaacacttacaaagttaattacatttacctc-ctccaaagatactaacaaa-ctcaaacccaaattctctcagattcaagacctgtctt 41910810  T
Q  101 tttatcactagaccaagt 118  Q
    |||| ||||||| |||||    
T  41910809 tttaccactagagcaagt 41910792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 32 - 128
Target Start/End: Original strand, 35237103 - 35237199
Alignment:
Q  32 acatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 128  Q
    ||||||||||| || ||||| ||||||||| ||||||| || | |||||||| ||||||||| | || ||||| |||||||||||| |||| |||||    
T  35237103 acatttacctcccttcaaagacactagcggggctcgaatccagattctctcgaattcaagacgtatcattttaccactagaccaagcctttagagtt 35237199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 195
Target Start/End: Complemental strand, 31638193 - 31638152
Alignment:
Q  154 tagtaggtaagctcatataaacataaaataagtcaattccct 195  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  31638193 tagtaggtaagctcacataaacataaaataagtcaattccct 31638152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 96; Significance: 6e-47; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 40156123 - 40155996
Alignment:
Q  1 tcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctt 100  Q
    ||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  40156123 tcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcactagcggggctcgaacccggattctctcggattcaagacctgtctt 40156024  T
Q  101 tttatcactagaccaagtctttggagtt 128  Q
    |||| |||||||||||  ||||||||||    
T  40156023 tttaccactagaccaaacctttggagtt 40155996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 44650476 - 44650349
Alignment:
Q  1 tcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctt 100  Q
    |||| |||||||||||||||||||  |||||||||||||||| |||||||||||||| |||||||||||  |||||||||||||||||||||||||||||    
T  44650476 tcggactcaaagagcacttacaaaggtaattacatttacctccctccaaaggcactaacggagctcgaaatcgggttctctcggattcaagacctgtctt 44650377  T
Q  101 tttatcactagaccaagtctttggagtt 128  Q
    |||| |||||||||||| ||||||||||    
T  44650376 tttaccactagaccaagcctttggagtt 44650349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 5039503 - 5039373
Alignment:
Q  1 tcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctt 100  Q
    ||||||||||||||||||||||||  ||||||| |||||||| ||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  5039503 tcgggctcaaagagcacttacaaaggtaattacgtttacctccctctaaaagcactagcggagctcgaacccgagttctctcggattcaagacctgtctt 5039404  T
Q  101 tttatcactagaccaagtctttggagttttt 131  Q
    |||| ||||| |||||| |||||||||||||    
T  5039403 tttaccactataccaagcctttggagttttt 5039373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 6672842 - 6672970
Alignment:
Q  1 tcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctt 100  Q
    ||||||||||||||| | ||||||  |||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  6672842 tcgggctcaaagagcgcgtacaaaggtaattacatttacctccctccaaaggcactagcggggcttgaacccgggttctctcggattcaagacctgtctt 6672941  T
Q  101 tttatcactagaccaagtctttggagttt 129  Q
    |||| |||||||||||  |||||||||||    
T  6672942 tttaccactagaccaaacctttggagttt 6672970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 10745281 - 10745408
Alignment:
Q  1 tcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctt 100  Q
    ||||| |||||||||||||||||| ||||||||||||||||| ||| |||||||||||||| ||||| ||||||||||||||| ||||||||||||||||    
T  10745281 tcgggttcaaagagcacttacaaagataattacatttacctccctctaaaggcactagcggggctcggacccgggttctctcgaattcaagacctgtctt 10745380  T
Q  101 tttatcactagaccaagtctttggagtt 128  Q
    |||| ||||| |||||| ||||||||||    
T  10745381 tttaccactaaaccaagcctttggagtt 10745408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 17136470 - 17136343
Alignment:
Q  1 tcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctt 100  Q
    ||||||||||||||||||||||||  || ||||||||||||| |||||||||||||| ||| |||||||||||||||||||| ||||||| ||||||| |    
T  17136470 tcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggcactaacggggctcgaacccgggttctctcagattcaaaacctgtcat 17136371  T
Q  101 tttatcactagaccaagtctttggagtt 128  Q
    ||||||||||||||||| ||||||||||    
T  17136370 tttatcactagaccaagcctttggagtt 17136343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 7860195 - 7860322
Alignment:
Q  1 tcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctt 100  Q
    ||||||||||||| ||||||||||| ||  |||||||||||| |||||||||||||||||| |||| ||||| ||||||||||||||||||||||||| |    
T  7860195 tcgggctcaaagaacacttacaaatgtatgtacatttacctccctccaaaggcactagcggggctcaaacccaggttctctcggattcaagacctgtcat 7860294  T
Q  101 tttatcactagaccaagtctttggagtt 128  Q
    |||| |||||||||||| ||||||||||    
T  7860295 tttaccactagaccaagcctttggagtt 7860322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 25987711 - 25987841
Alignment:
Q  1 tcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctt 100  Q
    |||| |||||||||||||||||||  |||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  25987711 tcggactcaaagagcacttacaaaggtaattacatttacctccctccaaaggcactagcggggctcgaacccgagttctctcggattcaagacctgtctt 25987810  T
Q  101 tttatcactagaccaagtctttggagttttt 131  Q
    |||| || |  | |||| |||||||||||||    
T  25987811 tttaccattgtatcaagcctttggagttttt 25987841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 30372729 - 30372856
Alignment:
Q  1 tcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctt 100  Q
    |||||||||||||||||| ||||| ||| |||||||||||||  |||||||||||||||||||||||||||| || ||||||| ||||||||||| ||||    
T  30372729 tcgggctcaaagagcactaacaaagatatttacatttacctccttccaaaggcactagcggagctcgaacccaggatctctcgaattcaagacctatctt 30372828  T
Q  101 tttatcactagaccaagtctttggagtt 128  Q
    |||| |||||||||||  ||||||||||    
T  30372829 tttaccactagaccaaacctttggagtt 30372856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 45137019 - 45137109
Alignment:
Q  1 tcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaag 91  Q
    ||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||    
T  45137019 tcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcactagcggggctcgaacccgggttctctcggattcaag 45137109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 36836378 - 36836479
Alignment:
Q  1 tcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctt 100  Q
    ||||||||||||||||||||||||  |||||||||||||||| |||||||||||| |||||  ||||||| |||||||||||||||||||||||||||||    
T  36836378 tcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcaccagcgggactcgaactcgggttctctcggattcaagacctgtctt 36836477  T
Q  101 tt 102  Q
    ||    
T  36836478 tt 36836479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 36380181 - 36380308
Alignment:
Q  1 tcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctt 100  Q
    ||||||||||||||||||||||||   ||||||||||||||| |||||||||||||||||| | || |||||| ||| ||||| |||||||||||||||     
T  36380181 tcgggctcaaagagcacttacaaagggaattacatttacctccctccaaaggcactagcggggttcaaacccgagttttctcgaattcaagacctgtctg 36380280  T
Q  101 tttatcactagaccaagtctttggagtt 128  Q
    |||| |||||||||||| ||||| ||||    
T  36380281 tttaccactagaccaagcctttgaagtt 36380308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 30 - 128
Target Start/End: Original strand, 2357153 - 2357251
Alignment:
Q  30 ttacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 128  Q
    ||||||||||||| ||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||    
T  2357153 ttacatttacctccctccaaaggtactagtggaactcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttggagtt 2357251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 3 - 112
Target Start/End: Complemental strand, 21637978 - 21637869
Alignment:
Q  3 gggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttt 102  Q
    ||||||||||||||||||||||  || ||||||||||||| |||||||||||||||||| |||| |||||||||||||||| ||||||||||| || |||    
T  21637978 gggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggcactagcggggctcaaacccgggttctctcgaattcaagacctatcattt 21637879  T
Q  103 tatcactaga 112  Q
    || |||||||    
T  21637878 taccactaga 21637869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 5 - 128
Target Start/End: Original strand, 2754104 - 2754227
Alignment:
Q  5 gctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtcttttta 104  Q
    ||||||||||||||||||||  || ||||||||||||| ||||||||||| ||| ||  |||||| |||||||||||||||||||||||||||| |||||    
T  2754104 gctcaaagagcacttacaaaggtatttacatttacctccctccaaaggcattagtgggactcgaatccgggttctctcggattcaagacctgtcatttta 2754203  T
Q  105 tcactagaccaagtctttggagtt 128  Q
     ||||| |||||| ||||| ||||    
T  2754204 ccactaaaccaagcctttgaagtt 2754227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 8 - 130
Target Start/End: Complemental strand, 26690230 - 26690108
Alignment:
Q  8 caaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatca 107  Q
    |||||| ||||||||||  |||||||||||||||| ||||||| ||||||||||  ||||||||| | |||||||| ||| || ||||||||||||| ||    
T  26690230 caaagatcacttacaaaggtaattacatttacctccctccaaaagcactagcgggactcgaacccagattctctcgaatttaaaacctgtctttttacca 26690131  T
Q  108 ctagaccaagtctttggagtttt 130  Q
    |||||||||| ||||||||||||    
T  26690130 ctagaccaagcctttggagtttt 26690108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 4 - 117
Target Start/End: Complemental strand, 3200961 - 3200849
Alignment:
Q  4 ggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtcttttt 103  Q
    |||||||||| ||||||||||  |||||||||||||||| |||||||||||||||||  ||||||| || ||||||||  ||||||||| ||||||||||    
T  3200961 ggctcaaagaacacttacaaaggtaattacatttacctccctccaaaggcactagcgaggctcgaatccaggttctcttagattcaagatctgtcttttt 3200862  T
Q  104 atcactagaccaag 117  Q
    | ||| ||||||||    
T  3200861 accac-agaccaag 3200849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 33066670 - 33066582
Alignment:
Q  4 ggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaaga 92  Q
    ||||||||||||||||||||| ||| ||||||||||||| |||||||| |||||| | ||||||||||||| |||||||  ||||||||    
T  33066670 ggctcaaagagcacttacaaagatatttacatttacctctctccaaagacactagtgaagctcgaacccggattctctcaaattcaaga 33066582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 51 - 129
Target Start/End: Original strand, 2098939 - 2099017
Alignment:
Q  51 ggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagttt 129  Q
    ||||||||||||| ||||||| ||||||||||| ||||||||||| || ||||| || ||||||||| |||||||||||    
T  2098939 ggcactagcggagttcgaacctgggttctctcgaattcaagacctatcattttaccaatagaccaagcctttggagttt 2099017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 558492 - 558548
Alignment:
Q  5 gctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcgg 61  Q
    ||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||    
T  558492 gctcaaagagcacttacaaaagtaattacatttacctccctccaaaggcactagcgg 558548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 21487231 - 21487106
Alignment:
Q  1 tcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctt 100  Q
    |||||||||||||||||||||||| ||| ||||||||||||| ||||||||  || || ||||||| |||   |||  ||| |||||||||||||||| |    
T  21487231 tcgggctcaaagagcacttacaaaaatatttacatttacctccctccaaagataccagtggagctcaaacttaggt--tcttggattcaagacctgtcat 21487134  T
Q  101 tttatcactagaccaagtctttggagtt 128  Q
    |||| |||| ||| ||  ||||||||||    
T  21487133 tttaccacttgactaaacctttggagtt 21487106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 3 - 104
Target Start/End: Original strand, 13047207 - 13047303
Alignment:
Q  3 gggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttt 102  Q
    ||||||||||||||||||   |  |||||| ||||||||| |||||||| ||   |||| |||||||||||| |||||||| ||||||||||||||||||    
T  13047207 gggctcaaagagcactta---aggtaattatatttacctccctccaaagacat--gcggggctcgaacccggattctctcgaattcaagacctgtctttt 13047301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 20961551 - 20961496
Alignment:
Q  14 gcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaa 69  Q
    ||||||||||||  | ||||||||||||| |||||| |||||||||||||||||||    
T  20961551 gcacttacaaatggatttacatttacctccctccaagggcactagcggagctcgaa 20961496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 30054491 - 30054618
Alignment:
Q  1 tcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctt 100  Q
    |||||||||||||||| |||||||  |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| || |||    
T  30054491 tcgggctcaaagagcatttacaaaggtaattacatttacctccctccaaaggcactagcggggctcgaacccgggttctctcggattcaagacttgactt 30054590  T
Q  101 tttatcactagaccaagtctttggagtt 128  Q
    |||| |||||||||||| ||||||||||    
T  30054591 tttaccactagaccaagcctttggagtt 30054618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 4 - 129
Target Start/End: Complemental strand, 20014538 - 20014413
Alignment:
Q  4 ggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtcttttt 103  Q
    ||||||||||||| |||||||| |||||||||||||||| ||||||||| ||||||||  ||||||||||||||||||||||||||||| ||||||||||    
T  20014538 ggctcaaagagcatttacaaatgtaattacatttacctccctccaaaggtactagcgggactcgaacccgggttctctcggattcaagatctgtcttttt 20014439  T
Q  104 atcactagaccaagtctttggagttt 129  Q
    | |||||||||||| |||||||||||    
T  20014438 accactagaccaagactttggagttt 20014413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 30370109 - 30370236
Alignment:
Q  1 tcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctt 100  Q
    ||||||||||||||||||||||||  |||||||||||||||| |||||||| |||||| || |||||||||||| |||||||| |||||| || ||||||    
T  30370109 tcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaagacactagtggggctcgaacccggattctctcgaattcaaaacttgtctt 30370208  T
Q  101 tttatcactagaccaagtctttggagtt 128  Q
    |||| |||||||||||| ||||||||||    
T  30370209 tttaccactagaccaagcctttggagtt 30370236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 45324089 - 45323962
Alignment:
Q  1 tcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctt 100  Q
    |||||||||| |||||||||||||  || ||||||||||||| ||||||| |||||||||| ||| |||||| ||||||||||||||||||||||||| |    
T  45324089 tcgggctcaaggagcacttacaaaggtatttacatttacctccctccaaaagcactagcggggctggaacccaggttctctcggattcaagacctgtcgt 45323990  T
Q  101 tttatcactagaccaagtctttggagtt 128  Q
    |||| |||||||||||| ||||||||||    
T  45323989 tttaccactagaccaagcctttggagtt 45323962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 21090198 - 21090074
Alignment:
Q  1 tcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctt 100  Q
    |||||||||||||||| |||||||| || ||||||||||||| |||||| ||||||||||| |||||||||||  |||||||| |||||||||||||| |    
T  21090198 tcgggctcaaagagcatttacaaatgtatttacatttacctccctccaacggcactagcggggctcgaacccgaattctctcgaattcaagacctgtcat 21090099  T
Q  101 tttatcactagaccaagtctttgga 125  Q
    |||| |||||||||||| |||||||    
T  21090098 tttaccactagaccaagcctttgga 21090074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 12025264 - 12025136
Alignment:
Q  1 tcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctt 100  Q
    ||||||||||| || |||||||||  |||||||||||||||  ||||||||||||||  || |||||||||| |||||||||| |||||||| |||| ||    
T  12025264 tcgggctcaaatagtacttacaaaggtaattacatttaccttcctccaaaggcactaatggggctcgaacccaggttctctcgaattcaagatctgtatt 12025165  T
Q  101 tttatcactagaccaagtctttggagttt 129  Q
    |||| ||||||||||||||||||||||||    
T  12025164 tttaccactagaccaagtctttggagttt 12025136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 4573458 - 4573359
Alignment:
Q  5 gctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtcttttta 104  Q
    ||||||||||||||||||||  || ||||||||||||| |||||||| || ||| || ||||||||||||||||||||||||||||||||||||||||||    
T  4573458 gctcaaagagcacttacaaaggtatttacatttacctccctccaaagacattagtggggctcgaacccgggttctctcggattcaagacctgtcttttta 4573359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 33763303 - 33763431
Alignment:
Q  1 tcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctt 100  Q
    ||||||||||| | ||||||||||  ||||||||||| |||| ||| |||||||||||||| |||||||||  | |||||||| ||||||||||||||||    
T  33763303 tcgggctcaaaaaacacttacaaaggtaattacatttgcctccctctaaaggcactagcggggctcgaacctagattctctcgaattcaagacctgtctt 33763402  T
Q  101 tttatcactagaccaagtctttggagttt 129  Q
    ||||  ||||||||||  |||| ||||||    
T  33763403 tttactactagaccaaacctttagagttt 33763431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 38 - 128
Target Start/End: Complemental strand, 15034501 - 15034411
Alignment:
Q  38 acctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 128  Q
    ||||| |||||||||||||||  | ||||||||| ||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||    
T  15034501 acctccctccaaaggcactagtagggctcgaacctgggttctttcggattcaagacctgtctttttaccactagaccaagcctttggagtt 15034411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 30850889 - 30850985
Alignment:
Q  1 tcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgt 97  Q
    ||||| ||||||||||||||||||   ||||| ||||||||| |||||||| ||||| ||| ||||||||||| ||||||||||||| |||| ||||    
T  30850889 tcgggttcaaagagcacttacaaaggcaattatatttacctccctccaaagacactaacggggctcgaacccgagttctctcggatttaagatctgt 30850985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 44438607 - 44438670
Alignment:
Q  9 aaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaaccc 72  Q
    ||||| ||||||||||  |||||||||||||||| ||||||||||| |||||||||||||||||    
T  44438607 aaagaacacttacaaaagtaattacatttacctccctccaaaggcattagcggagctcgaaccc 44438670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 22024186 - 22024128
Alignment:
Q  1 tcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagc 59  Q
    ||||||||||||||||||||||||  ||||||||||||||||  |||||||||||||||    
T  22024186 tcgggctcaaagagcacttacaaaggtaattacatttacctccatccaaaggcactagc 22024128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 35618058 - 35617948
Alignment:
Q  1 tcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctt 100  Q
    ||||||||||||||||||||||||  ||    ||||||| || ||  |||||||||| ||||||||||| |  |||||||| |||||||||||||||| |    
T  35618058 tcgggctcaaagagcacttacaaagcta----catttacatccctg-aaaggcactaacggagctcgaatctaggttctcttggattcaagacctgtcat 35617964  T
Q  101 tttatcactagaccaa 116  Q
    |||| |||||||||||    
T  35617963 tttaccactagaccaa 35617948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 55
Target Start/End: Original strand, 14498133 - 14498182
Alignment:
Q  6 ctcaaagagcacttacaaatataattacatttacctcactccaaaggcac 55  Q
    |||||||||||||||||||  |||||||||||||||| ||||||||||||    
T  14498133 ctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcac 14498182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 35371794 - 35371833
Alignment:
Q  1 tcgggctcaaagagcacttacaaatataattacatttacc 40  Q
    ||||||||||||||||||||||||  ||||||||||||||    
T  35371794 tcgggctcaaagagcacttacaaaggtaattacatttacc 35371833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 33762589 - 33762646
Alignment:
Q  1 tcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactag 58  Q
    ||||||||||| | ||||||||||  ||||||||||| |||| ||| |||||||||||    
T  33762589 tcgggctcaaaaaacacttacaaaggtaattacatttgcctccctctaaaggcactag 33762646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 8e-40; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 35163799 - 35163926
Alignment:
Q  1 tcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctt 100  Q
    ||||||||||||||||||||||||  || ||||||||||||| ||||||||||| ||| || |||||||||| |||||||||||||||||||||||||||    
T  35163799 tcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggcattagtggggctcgaaccctggttctctcggattcaagacctgtctt 35163898  T
Q  101 tttatcactagaccaagtctttggagtt 128  Q
    |||| |||||||||||| ||||| ||||    
T  35163899 tttaccactagaccaagcctttgaagtt 35163926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 19686876 - 19686991
Alignment:
Q  1 tcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctt 100  Q
    ||||||||||||||||||||||||  |||||||||||||||| || |||||||||||| || |||||||||| ||||||||| |||||||||||||| ||    
T  19686876 tcgggctcaaagagcacttacaaaggtaattacatttacctccctacaaaggcactagaggggctcgaacccaggttctctcagattcaagacctgtttt 19686975  T
Q  101 tttatcactagaccaa 116  Q
    |||| |||||||||||    
T  19686976 tttaccactagaccaa 19686991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 5 - 128
Target Start/End: Original strand, 2711787 - 2711910
Alignment:
Q  5 gctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtcttttta 104  Q
    ||||||||||||||||||||  || ||||||||||||| ||||||| ||||||| || ||||||| || |||||| |||||||||||||||||| |||||    
T  2711787 gctcaaagagcacttacaaaggtatttacatttacctccctccaaaagcactagtggggctcgaatccaggttctatcggattcaagacctgtcatttta 2711886  T
Q  105 tcactagaccaagtctttggagtt 128  Q
     |||||||||||| |||| |||||    
T  2711887 ccactagaccaagcctttcgagtt 2711910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 30 - 125
Target Start/End: Complemental strand, 14496406 - 14496311
Alignment:
Q  30 ttacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttgga 125  Q
    ||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||| |||||||||||  |||||||    
T  14496406 ttacatttacctccctccaaaggcactagtggggctcgaacccgggttctctcggattcaagacctttctttttaccactagaccaaacctttgga 14496311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 20685408 - 20685348
Alignment:
Q  1 tcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcgg 61  Q
    ||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||    
T  20685408 tcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcactagcgg 20685348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 29 - 128
Target Start/End: Original strand, 14505600 - 14505698
Alignment:
Q  29 attacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 128  Q
    |||||||||||||| ||||||| |||||||||| |||||||  |||| |||||||||||||| || ||| |||||| | |||||||||| ||||||||||    
T  14505600 attacatttacctccctccaaaagcactagcggggctcgaattcgggatctctcggattcaa-acttgtttttttacctctagaccaagcctttggagtt 14505698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 17948763 - 17948703
Alignment:
Q  1 tcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcgg 61  Q
    ||||||||||||||||||||||||  || ||||||||||||| |||||||| |||||||||    
T  17948763 tcgggctcaaagagcacttacaaaggtatttacatttacctctctccaaagacactagcgg 17948703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 15070208 - 15070152
Alignment:
Q  1 tcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcacta 57  Q
    |||||||||| || ||||||||||| |||||| ||||||||| ||||||||||||||    
T  15070208 tcgggctcaatgaacacttacaaatgtaattatatttacctccctccaaaggcacta 15070152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 24336695 - 24336633
Alignment:
Q  4 ggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctc 66  Q
    |||||||| | ||||||||||  || ||||||||||||| ||||||||| |||||| ||||||    
T  24336695 ggctcaaaaaacacttacaaaagtatttacatttacctccctccaaagggactagcagagctc 24336633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 7018 - 7142
Alignment:
Q  1 tcgggctcaaagagcacttacaaatataattacatttacctcactccaaaggcactagcggagctcgaacccgggttctctcggattcaagacctgtctt 100  Q
    |||| |||||||| ||||| ||||  ||||||||||||| || ||||||| ||||||||||  ||||||||||| |||||||   ||| || ||||||||    
T  7018 tcggactcaaagaacacttgcaaaggtaattacatttacttccctccaaacgcactagcgggactcgaacccggattctctc---ttcgagtcctgtctt 7114  T
Q  101 tttatcactagaccaagtctttggagttt 129  Q
    |||| ||||| | |||| |||||||||||    
T  7115 tttaccacta-aacaagcctttggagttt 7142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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