View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5053_high_14 (Length: 318)

Name: NF5053_high_14
Description: NF5053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5053_high_14
NF5053_high_14
[»] chr7 (1 HSPs)
chr7 (16-308)||(35677967-35678259)


Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 16 - 308
Target Start/End: Original strand, 35677967 - 35678259
Alignment:
Q  16 attaccatacccaacacctgcatgtgtaaacccatccaaatcaaccttatcatcattttcttcaccaagtaacatagcttccaattcctcagaatcccaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35677967 attaccatacccaacacctgcatgtgtaaacccatccaaatcaaccttatcatcattttcttcaccaagtaacatagcttccaattcctcagaatcccaa 35678066  T
Q  116 tcagactcatcatcaattgacccattatcctcttcttcacattcatcctcttcatcatctaattcataatcctccttagaaaatgtttcaatttttacct 215  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  35678067 tcagactcatcatcaattgacccattatcctcttcttcaccatcatcctcttcatcatctaattcataatcctcctcagaaaatgtttcaatttttacct 35678166  T
Q  216 ctttttgttggtaaaaaccagggagatttggatcagtatcttgcatgaaaattccacaaccagggcaaatgggtccaagagcttcatcttcat 308  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35678167 ctttttgttggtaaaaaccagggagatttggatcattatcttgcatgaaaattccacaaccagggcaaatgggtccaagagcttcatcttcat 35678259  T

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