View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5053_high_15 (Length: 317)
Name: NF5053_high_15
Description: NF5053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5053_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 15 - 301
Target Start/End: Complemental strand, 32247966 - 32247680
Alignment:
| Q |
15 |
catcaaagtcaatgtttgtctggagattgatgcatggaaaggtccctactaatgagaactaaatgattagaggctgcaacatttcatcaatgtgcaatgt |
114 |
Q |
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| T |
32247966 |
catcaaagtcaatgtttgtctggagattgatgcatggaaaggtccctactaatgagaactaaatgattagaggctgcaacattccatcaatgtgcaattt |
32247867 |
T |
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| Q |
115 |
gtgttttatacatgtagaatctttatttcatattttcttcacttgctcatatgctgtaaaattgcggtcatggttggcttctgcactcaatatatcttta |
214 |
Q |
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|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
32247866 |
gtgttttaaacatgtagaatcttcatttcatattttcttcacttgctcatatgctgtaaaattgtggtcatggttggcttctgcactcaatatatcttta |
32247767 |
T |
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| Q |
215 |
aatttctatagcctacaggaggtttggaaagtttgtgatttaccttggtctcctcaatgtaaggttgtaattttatctgctttgatc |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32247766 |
aatttctatagcctacaggaggtttggaaagtttgtgatttaccttggtctcctcaatgtaaggttgtaattttatctgctttgatc |
32247680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 166; Significance: 8e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 19 - 301
Target Start/End: Complemental strand, 43577020 - 43576750
Alignment:
| Q |
19 |
aaagtcaatgtttgtctggagattgatgcatggaaaggtccctactaatgagaactaaatgattagaggctgcaacatttcatcaatgtgcaatgtgtgt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||| | ||||| |
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| T |
43577020 |
aaagtcaatgtttgtctggagattgatgcatggaaaggtccctactgatgagaacttaatgattagaggctgcaacattccatcaatgtgcagtttgtgt |
43576921 |
T |
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| Q |
119 |
tttatacatgtagaatctttatttcatattttcttcacttgctcatatgctgtaaaattgcggtcatggttggcttctgcactcaatatatctttaaatt |
218 |
Q |
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||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||| || | || |||||||||||||||||| |||| |
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| T |
43576920 |
cttaaacatgtagaatcttcatttcatattttcttcacttgttcatatgctgtaaaactgtg------------ttttgcactcaatatatctttgaatt |
43576833 |
T |
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| Q |
219 |
tctatagcctacaggaggtttggaaagtttgtgatttaccttggtctcctcaatgtaaggttgtaattttatctgctttgatc |
301 |
Q |
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|| ||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
43576832 |
tcgctagcctagaggagctttggaaagtttgcgatttaccttggtctcctcaatgtaaggttgttattttatctgctttgatc |
43576750 |
T |
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