View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5053_high_19 (Length: 303)

Name: NF5053_high_19
Description: NF5053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5053_high_19
NF5053_high_19
[»] chr1 (1 HSPs)
chr1 (18-303)||(35417300-35417584)


Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 18 - 303
Target Start/End: Original strand, 35417300 - 35417584
Alignment:
Q  18 agtattttagaaagtgatgcattgaagtaagtaatacatcaagttttattgaccaaactttctctcagccgcatgtggtatatattttagaaagtcccaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||    
T  35417300 agtattttagaaagtgatgcattgaagtaagtaatacatcaagttttattgaccaaattttctctcagccggatgtggtatatattttataaagtcccaa 35417399  T
Q  118 taactcttatcataaatcggacttattatatacacaagccttctgcttatgtcaatcttcaggctcctatattaccatttctacttggggtattgtattt 217  Q
    ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35417400 taactct-atcataaatcggacttattatatatacaagccttctgcttatgtcaatcttcaggctcctatattaccatttctacttggggtattgtattt 35417498  T
Q  218 cagagtaaaagatttcacaggccatagtaatattatcaaaggatgggtctttgagatcttccacaggtgaaagaggattactcttc 303  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  35417499 cagagtaaaacatttcacaggccatagtaatattatcaaaggatggatctttgagatcttccacaggttaaagaggattactcttc 35417584  T

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