View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5053_high_2 (Length: 655)
Name: NF5053_high_2
Description: NF5053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5053_high_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 421; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 124 - 636
Target Start/End: Original strand, 43082904 - 43083415
Alignment:
| Q |
124 |
taggcaatttctacgaacatgcatgctaaagtagannnnnnnnnnnnggaggaatttttgcatttcaccaacacaacaacgataagcacttctaaccaag |
223 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43082904 |
taggcaatttctacgaacatacatgctaaagtagattttttatttttggaggaatttttgcatttcaccaacacaacaacgataagcacttctaaccaag |
43083003 |
T |
|
| Q |
224 |
tacatttcattattctcctattttcattttgtacggattcaaaaaagagtttctacgtactctctgcaacactttttcaacattttccagacttaccaaa |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43083004 |
tacatttcattattctcctattttcattttgtacggattcaaaaaagagtttctacgtactctctgcaacactttttcaacattttccagacttaccaaa |
43083103 |
T |
|
| Q |
324 |
ccatgaaacataccaacattttgtactatgactatcgaagaagccacttgcgccttaatcaaaactacttcaccaaacacactcagaacgttttatacaa |
423 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43083104 |
ccatgaaacataccaacagttcgtactatgactatccaagaagccacttgcgccttaatcaaaactacttcaccaaacacactcagaacgttttatacaa |
43083203 |
T |
|
| Q |
424 |
aggaaactgctaataatatctttaggatattcattaataaaatatggatgtgatgtgtataaaaatagtgtattcagagaaggtgtcacttcaggaaatg |
523 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43083204 |
aggaaactgctaataatatctttaggatattcattaataaaatatggatgtgatgtgtataaaaatagtgtattcagagaaggtgtcacttcaggaaatg |
43083303 |
T |
|
| Q |
524 |
gttaagagctcgatctcttgctcttttgaattgagaaaattcagagaaggaaaaactcatcttgtgtgtaacggnnnnnnnnnatagagattagtcacgt |
623 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
43083304 |
gttaagagctcaatctcttgctcttttgaattgagaaaattcagagaaggaaaaactcatcttgtgtgtaacag-gtttttttatagagattagtcacgt |
43083402 |
T |
|
| Q |
624 |
taattgataataa |
636 |
Q |
| |
|
||||||||||||| |
|
|
| T |
43083403 |
taattgataataa |
43083415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 2 - 98
Target Start/End: Original strand, 43082805 - 43082901
Alignment:
| Q |
2 |
atatagttccaatttcaatcatttgccaaaaggatatgcatgttatctttaatatcggaatcacatagcacacaattatatggacaatttacccctc |
98 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43082805 |
atatagttccattttcaatcatttgccaaaaggatatgcatgttatctttaatatcggaatcacatagcacacaattatatggacaatttacccctc |
43082901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University