View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5053_high_21 (Length: 296)
Name: NF5053_high_21
Description: NF5053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5053_high_21 |
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Alignment Details
Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 114 - 181
Target Start/End: Original strand, 2022207 - 2022274
Alignment:
| Q |
114 |
ttcaacttacaactccagtgggtgagtaggtagaaacagtgaacttctggtcactgttgtagtccttg |
181 |
Q |
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| T |
2022207 |
ttcaacttacaactccagtgggtgagtaggtagaaacagtgaacttctggtcactgttgtagtccttg |
2022274 |
T |
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Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 2022104 - 2022175
Alignment:
| Q |
11 |
acatcatcattgttattgttaccattaacatatacaaatagcaaagaaaccccaattacaagctaaacactg |
82 |
Q |
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|||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
2022104 |
acatcatcatcgttattgttactattaacatatacaaatagcaaagaaaacccaattacaagctaaacactg |
2022175 |
T |
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