View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5053_high_28 (Length: 250)

Name: NF5053_high_28
Description: NF5053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5053_high_28
NF5053_high_28
[»] chr5 (9 HSPs)
chr5 (54-166)||(31640632-31640739)
chr5 (1-55)||(31640551-31640605)
chr5 (183-238)||(31640809-31640864)
chr5 (170-238)||(14138809-14138877)
chr5 (190-235)||(4433883-4433928)
chr5 (194-238)||(8145515-8145559)
chr5 (188-238)||(27481963-27482014)
chr5 (190-238)||(2477777-2477826)
chr5 (194-238)||(6043391-6043435)
[»] chr4 (6 HSPs)
chr4 (170-235)||(37934797-37934862)
chr4 (170-237)||(21802175-21802242)
chr4 (190-238)||(30563350-30563399)
chr4 (194-238)||(22199401-22199445)
chr4 (194-238)||(24128380-24128425)
chr4 (190-242)||(44744571-44744622)
[»] chr8 (11 HSPs)
chr8 (170-242)||(24844716-24844787)
chr8 (170-236)||(34665525-34665591)
chr8 (170-238)||(30055657-30055726)
chr8 (170-238)||(20091656-20091725)
chr8 (194-238)||(37985935-37985979)
chr8 (194-236)||(15187704-15187746)
chr8 (170-235)||(27835308-27835374)
chr8 (170-228)||(37132536-37132594)
chr8 (194-242)||(14128996-14129045)
chr8 (194-238)||(40780008-40780053)
chr8 (194-238)||(32393999-32394043)
[»] chr6 (7 HSPs)
chr6 (190-238)||(8515602-8515650)
chr6 (194-238)||(9752125-9752169)
chr6 (170-238)||(2309278-2309347)
chr6 (170-238)||(28675289-28675358)
chr6 (194-238)||(18365453-18365497)
chr6 (194-238)||(18370717-18370761)
chr6 (194-238)||(18889523-18889567)
[»] chr7 (7 HSPs)
chr7 (194-238)||(45637853-45637897)
chr7 (194-238)||(36790345-36790390)
chr7 (170-238)||(42696224-42696293)
chr7 (194-238)||(3962120-3962164)
chr7 (170-237)||(4974590-4974658)
chr7 (190-238)||(42611952-42612001)
chr7 (194-238)||(24395113-24395157)
[»] chr2 (2 HSPs)
chr2 (188-238)||(31174708-31174758)
chr2 (170-237)||(14941219-14941290)
[»] chr3 (10 HSPs)
chr3 (194-238)||(42297495-42297537)
chr3 (194-238)||(19650779-19650823)
chr3 (194-238)||(22426224-22426268)
chr3 (170-237)||(26612891-26612956)
chr3 (170-237)||(33145854-33145922)
chr3 (194-238)||(42298005-42298048)
chr3 (170-238)||(24343688-24343759)
chr3 (194-242)||(37216932-37216981)
chr3 (194-238)||(30385542-30385586)
chr3 (171-219)||(42921286-42921334)
[»] chr1 (6 HSPs)
chr1 (169-238)||(27523110-27523179)
chr1 (170-238)||(25973550-25973617)
chr1 (194-238)||(44094839-44094883)
chr1 (170-228)||(22157393-22157452)
chr1 (175-238)||(51621067-51621134)
chr1 (170-238)||(25463817-25463886)
[»] scaffold0096 (1 HSPs)
scaffold0096 (194-238)||(41152-41196)
[»] scaffold0665 (1 HSPs)
scaffold0665 (194-242)||(3200-3249)
[»] scaffold0471 (1 HSPs)
scaffold0471 (194-238)||(12983-13028)
[»] scaffold0085 (1 HSPs)
scaffold0085 (194-238)||(47991-48035)


Alignment Details
Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 54 - 166
Target Start/End: Original strand, 31640632 - 31640739
Alignment:
Q  54 acaagctctactcattgacatcaaaccaattgtatctccattaaatcctatagttaattttctaatttttgtatcatattgacttattctacttctctat 153  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||| |||    
T  31640632 acaagctctactcattggcatcaaaccaattgtatctccattaaatcctatagttaattttctaatttttgtatcata-----ttattctacttctgtat 31640726  T
Q  154 tagttcctcaact 166  Q
    ||||||| |||||    
T  31640727 tagttccacaact 31640739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 31640551 - 31640605
Alignment:
Q  1 tgaccatgtttgttcttgcacaggatcgcgtcgtggacaatcaaggtctcgtcac 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31640551 tgaccatgtttgttcttgcacaggatcgcgtcgtggacaatcaaggtctcgtcac 31640605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 183 - 238
Target Start/End: Original strand, 31640809 - 31640864
Alignment:
Q  183 attgaaatcttatttattaacctttcataaacaaaaatacataacatccaccaccc 238  Q
    ||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  31640809 attgatatcttatttattaacctttcataaaaaaaaatacataacacccaccaccc 31640864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 170 - 238
Target Start/End: Complemental strand, 14138877 - 14138809
Alignment:
Q  170 taatcacccttaaattgaaatcttatttattaacctttcataaacaaaaatacataacatccaccaccc 238  Q
    |||||||| ||| |||  ||||| ||||||||| |||||||||| |||||||||||||| |||||||||    
T  14138877 taatcacctttagatttcaatctcatttattaatctttcataaaaaaaaatacataacacccaccaccc 14138809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 190 - 235
Target Start/End: Original strand, 4433883 - 4433928
Alignment:
Q  190 tcttatttattaacctttcataaacaaaaatacataacatccacca 235  Q
    ||||||||||||| |||||||||| |||||||||||||| ||||||    
T  4433883 tcttatttattaatctttcataaaaaaaaatacataacacccacca 4433928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 238
Target Start/End: Complemental strand, 8145559 - 8145515
Alignment:
Q  194 atttattaacctttcataaacaaaaatacataacatccaccaccc 238  Q
    ||||||||| |||||||||| |||||||||||||| |||||||||    
T  8145559 atttattaatctttcataaaaaaaaatacataacacccaccaccc 8145515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 27482014 - 27481963
Alignment:
Q  188 aatcttatttattaacctttcat-aaacaaaaatacataacatccaccaccc 238  Q
    |||||||||||||||||||| || ||| |||||||||||||| |||||||||    
T  27482014 aatcttatttattaaccttttataaaaaaaaaatacataacacccaccaccc 27481963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 2477826 - 2477777
Alignment:
Q  190 tcttatttattaacctttcat-aaacaaaaatacataacatccaccaccc 238  Q
    ||||||||||||| ||||||| ||| |||||||||||||| |||||||||    
T  2477826 tcttatttattaatctttcataaaaaaaaaatacataacacccaccaccc 2477777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 238
Target Start/End: Original strand, 6043391 - 6043435
Alignment:
Q  194 atttattaacctttcataaacaaaaatacataacatccaccaccc 238  Q
    ||||||||| |||||||||| |||||||||||||| ||| |||||    
T  6043391 atttattaatctttcataaaaaaaaatacataacacccaacaccc 6043435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 170 - 235
Target Start/End: Original strand, 37934797 - 37934862
Alignment:
Q  170 taatcacccttaaattgaaatcttatttattaacctttcataaacaaaaatacataacatccacca 235  Q
    |||||||||||| |||  ||||| |||||||||||||||||||| |||||||||||||| ||||||    
T  37934797 taatcacccttagatttcaatctcatttattaacctttcataaaaaaaaatacataacaaccacca 37934862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 237
Target Start/End: Original strand, 21802175 - 21802242
Alignment:
Q  170 taatcacccttaaattgaaatcttatttattaacctttcataaacaaaaatacataacatccaccacc 237  Q
    |||||||||||| |||  | ||| ||||||||| |||||||||| |||||||||||||| ||||||||    
T  21802175 taatcacccttagatttcagtctcatttattaatctttcataaaaaaaaatacataacacccaccacc 21802242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 30563399 - 30563350
Alignment:
Q  190 tcttatttattaacctttcat-aaacaaaaatacataacatccaccaccc 238  Q
    ||||||||||||||||||||| ||| |||||||||||||| |||||||||    
T  30563399 tcttatttattaacctttcataaaaaaaaaatacataacacccaccaccc 30563350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 238
Target Start/End: Complemental strand, 22199445 - 22199401
Alignment:
Q  194 atttattaacctttcataaacaaaaatacataacatccaccaccc 238  Q
    ||||||||| |||||||||| |||||||||||||| |||||||||    
T  22199445 atttattaatctttcataaaaaaaaatacataacacccaccaccc 22199401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 238
Target Start/End: Complemental strand, 24128425 - 24128380
Alignment:
Q  194 atttattaacctttcataaacaaaa-atacataacatccaccaccc 238  Q
    ||||||||| |||||||||| |||| ||||||||||||||||||||    
T  24128425 atttattaatctttcataaaaaaaagatacataacatccaccaccc 24128380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 242
Target Start/End: Complemental strand, 44744622 - 44744571
Alignment:
Q  190 tcttatttattaacctttcataaacaaaaatacataacatccaccaccctatg 242  Q
    |||||||||||||||| | | ||| |||||||||||||| |||||||||||||    
T  44744622 tcttatttattaacctat-acaaaaaaaaatacataacacccaccaccctatg 44744571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 170 - 242
Target Start/End: Original strand, 24844716 - 24844787
Alignment:
Q  170 taatcacccttaaattgaaatcttatttattaacctttcataaacaaaaatacataacatccaccaccctatg 242  Q
    ||||||| |||| |||  ||||||| |||||||||||||||||| |||||||||||||| |||||||||||||    
T  24844716 taatcactcttagattttaatcttaattattaacctttcataaa-aaaaatacataacacccaccaccctatg 24844787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 170 - 236
Target Start/End: Complemental strand, 34665591 - 34665525
Alignment:
Q  170 taatcacccttaaattgaaatcttatttattaacctttcataaacaaaaatacataacatccaccac 236  Q
    |||||||||||| |||  | ||| |||||||||||||||||||| |||||||||||||| |||||||    
T  34665591 taatcacccttagatttcagtctcatttattaacctttcataaaaaaaaatacataacacccaccac 34665525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 170 - 238
Target Start/End: Complemental strand, 30055726 - 30055657
Alignment:
Q  170 taatcacccttaaattgaaatcttatttattaacctttcat-aaacaaaaatacataacatccaccaccc 238  Q
    |||||||||||| |||  | ||| ||||||||||||||||| ||| ||||||||||||||||||||||||    
T  30055726 taatcacccttagattttagtctcatttattaacctttcataaaaaaaaaatacataacatccaccaccc 30055657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 238
Target Start/End: Original strand, 20091656 - 20091725
Alignment:
Q  170 taatcacccttaaattgaaatcttatttattaacctttcat-aaacaaaaatacataacatccaccaccc 238  Q
    |||||||||||| |||  | ||| ||||||||||||||||| ||| |||||||||||||| |||||||||    
T  20091656 taatcacccttagatttcagtctcatttattaacctttcataaaaaaaaaatacataacacccaccaccc 20091725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 238
Target Start/End: Original strand, 37985935 - 37985979
Alignment:
Q  194 atttattaacctttcataaacaaaaatacataacatccaccaccc 238  Q
    ||||||||| |||||||||| |||||||||||||| |||||||||    
T  37985935 atttattaatctttcataaaaaaaaatacataacacccaccaccc 37985979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 236
Target Start/End: Complemental strand, 15187746 - 15187704
Alignment:
Q  194 atttattaacctttcataaacaaaaatacataacatccaccac 236  Q
    ||||||||| |||||||||| |||||||||||||| |||||||    
T  15187746 atttattaatctttcataaaaaaaaatacataacacccaccac 15187704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 235
Target Start/End: Original strand, 27835308 - 27835374
Alignment:
Q  170 taatcacccttaaattgaaatcttatttattaacctttcataaa-caaaaatacataacatccacca 235  Q
    |||||| ||||| |||  ||||| |||||||||||||| ||||| ||||||||||||||| ||||||    
T  27835308 taatcatccttagatttcaatctcatttattaaccttttataaaacaaaaatacataacacccacca 27835374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 37132536 - 37132594
Alignment:
Q  170 taatcacccttaaattgaaatcttatttattaacctttcataaacaaaaatacataaca 228  Q
    |||||||||||| |||  | |||||||||||||||||||| ||| ||||| ||||||||    
T  37132536 taatcacccttagatttcagtcttatttattaacctttcaaaaaaaaaaaaacataaca 37132594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 14129045 - 14128996
Alignment:
Q  194 atttattaacctttcataaacaaaaa-tacataacatccaccaccctatg 242  Q
    ||||||||| |||||||||| ||||| ||||||||| |||||||||||||    
T  14129045 atttattaatctttcataaaaaaaaaatacataacacccaccaccctatg 14128996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 238
Target Start/End: Original strand, 40780008 - 40780053
Alignment:
Q  194 atttattaacctttcataaacaaaa-atacataacatccaccaccc 238  Q
    ||||||||| |||||||||| |||| ||||||||||||||||||||    
T  40780008 atttattaatctttcataaaaaaaagatacataacatccaccaccc 40780053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 238
Target Start/End: Complemental strand, 32394043 - 32393999
Alignment:
Q  194 atttattaacctttcataaacaaaaatacataacatccaccaccc 238  Q
    ||||||||| |||||||||| |||||||||||||| | |||||||    
T  32394043 atttattaatctttcataaaaaaaaatacataacacctaccaccc 32393999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 8515602 - 8515650
Alignment:
Q  190 tcttatttattaacctttcataaacaaaaatacataacatccaccaccc 238  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  8515602 tcttatttattaacatttcataaaaaaaaatacataacatccaccaccc 8515650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 238
Target Start/End: Original strand, 9752125 - 9752169
Alignment:
Q  194 atttattaacctttcataaacaaaaatacataacatccaccaccc 238  Q
    |||||||||||||||||||| |||||||||||||| ||| |||||    
T  9752125 atttattaacctttcataaaaaaaaatacataacacccatcaccc 9752169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 238
Target Start/End: Original strand, 2309278 - 2309347
Alignment:
Q  170 taatcacccttaaattgaaatcttatttattaacctttcat-aaacaaaaatacataacatccaccaccc 238  Q
    |||||||||||| |||  | ||| ||||||||||||||||| ||| |||||||||||||| |||| ||||    
T  2309278 taatcacccttagatttcagtctcatttattaacctttcataaaaaaaaaatacataacacccacaaccc 2309347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 238
Target Start/End: Complemental strand, 28675358 - 28675289
Alignment:
Q  170 taatcacccttaaattgaaatcttatttattaacctttcataaa-caaaaatacataacatccaccaccc 238  Q
    |||||||||||| |||  | ||| ||||||||||||||||||||  |||||||||||||  |||||||||    
T  28675358 taatcacccttagatttcagtctcatttattaacctttcataaataaaaaatacataacccccaccaccc 28675289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 238
Target Start/End: Original strand, 18365453 - 18365497
Alignment:
Q  194 atttattaacctttcataaacaaaaatacataacatccaccaccc 238  Q
    ||||||||| |||||||||| |||||||||||||| |||| ||||    
T  18365453 atttattaatctttcataaaaaaaaatacataacacccactaccc 18365497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 238
Target Start/End: Original strand, 18370717 - 18370761
Alignment:
Q  194 atttattaacctttcataaacaaaaatacataacatccaccaccc 238  Q
    ||||||||| |||||||||| |||||||||||||| |||| ||||    
T  18370717 atttattaatctttcataaaaaaaaatacataacacccactaccc 18370761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 238
Target Start/End: Original strand, 18889523 - 18889567
Alignment:
Q  194 atttattaacctttcataaacaaaaatacataacatccaccaccc 238  Q
    ||||||||| |||||||||| |||||||||||| | |||||||||    
T  18889523 atttattaatctttcataaaaaaaaatacataaaacccaccaccc 18889567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 194 - 238
Target Start/End: Complemental strand, 45637897 - 45637853
Alignment:
Q  194 atttattaacctttcataaacaaaaatacataacatccaccaccc 238  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||    
T  45637897 atttattaatctttcataaaaaaaaatacataacatccaccaccc 45637853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 194 - 238
Target Start/End: Original strand, 36790345 - 36790390
Alignment:
Q  194 atttattaacctttcataaa-caaaaatacataacatccaccaccc 238  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||    
T  36790345 atttattaacctttcataaaacaaaaatacataacacccaccaccc 36790390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 238
Target Start/End: Complemental strand, 42696293 - 42696224
Alignment:
Q  170 taatcacccttaaattgaaatcttatttattaacctttcataaacaaaaa-tacataacatccaccaccc 238  Q
    |||||||||||| |||  | ||| |||||||||| ||||||||| ||||| |||||||||||||||||||    
T  42696293 taatcacccttagatttcagtctcatttattaacttttcataaaaaaaaaatacataacatccaccaccc 42696224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 238
Target Start/End: Complemental strand, 3962164 - 3962120
Alignment:
Q  194 atttattaacctttcataaacaaaaatacataacatccaccaccc 238  Q
    ||||||||| |||||||||| |||||||||||||| |||||||||    
T  3962164 atttattaatctttcataaaaaaaaatacataacacccaccaccc 3962120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 237
Target Start/End: Original strand, 4974590 - 4974658
Alignment:
Q  170 taatcacccttaaattgaaatcttatttattaacctttcat-aaacaaaaatacataacatccaccacc 237  Q
    |||||||||||| |||  | ||| ||||||||||||||||| ||| |||||||||||||| ||||||||    
T  4974590 taatcacccttagatttcagtctcatttattaacctttcataaaaaaaaaatacataacacccaccacc 4974658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 42612001 - 42611952
Alignment:
Q  190 tcttatttattaacctttcat-aaacaaaaatacataacatccaccaccc 238  Q
    ||||||||||||| ||||||| ||| |||||||||||||| |||||||||    
T  42612001 tcttatttattaatctttcataaaaaaaaaatacataacacccaccaccc 42611952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 238
Target Start/End: Complemental strand, 24395157 - 24395113
Alignment:
Q  194 atttattaacctttcataaacaaaaatacataacatccaccaccc 238  Q
    ||||||||| |||||||||| | |||||||||||| |||||||||    
T  24395157 atttattaatctttcataaaaataaatacataacacccaccaccc 24395113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 31174708 - 31174758
Alignment:
Q  188 aatcttatttattaacctttcataaacaaaaatacataacatccaccaccc 238  Q
    ||||| ||||||||| |||||||||| |||||||||||||| |||||||||    
T  31174708 aatctcatttattaatctttcataaaaaaaaatacataacacccaccaccc 31174758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 237
Target Start/End: Original strand, 14941219 - 14941290
Alignment:
Q  170 taatcacccttaaattgaaatcttatttattaacctttcataaac----aaaaatacataacatccaccacc 237  Q
    |||||| ||||| |||  ||||||||||||||||||||||||||     |||||||||||||| ||||||||    
T  14941219 taatcatccttagatttcaatcttatttattaacctttcataaaataaaaaaaatacataacacccaccacc 14941290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 194 - 238
Target Start/End: Complemental strand, 42297537 - 42297495
Alignment:
Q  194 atttattaacctttcataaacaaaaatacataacatccaccaccc 238  Q
    ||||||||||||||||||||  |||||||||||||||||||||||    
T  42297537 atttattaacctttcataaa--aaaatacataacatccaccaccc 42297495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 238
Target Start/End: Original strand, 19650779 - 19650823
Alignment:
Q  194 atttattaacctttcataaacaaaaatacataacatccaccaccc 238  Q
    ||||||||| |||||||||| |||||||||||||| |||||||||    
T  19650779 atttattaatctttcataaaaaaaaatacataacacccaccaccc 19650823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 238
Target Start/End: Original strand, 22426224 - 22426268
Alignment:
Q  194 atttattaacctttcataaacaaaaatacataacatccaccaccc 238  Q
    ||||||||| |||||||||| |||||||||||||| |||||||||    
T  22426224 atttattaatctttcataaaaaaaaatacataacacccaccaccc 22426268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 237
Target Start/End: Complemental strand, 26612956 - 26612891
Alignment:
Q  170 taatcacccttaaattgaaatcttatttattaacctttcataaacaaaaatacataacatccaccacc 237  Q
    |||||||||||| |||  | ||| |||||||||||||||||||  |||||||||||||| ||||||||    
T  26612956 taatcacccttagatttcagtctcatttattaacctttcataa--aaaaatacataacacccaccacc 26612891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 237
Target Start/End: Complemental strand, 33145922 - 33145854
Alignment:
Q  170 taatcacccttaaattgaaatcttatttattaacctttcat-aaacaaaaatacataacatccaccacc 237  Q
    |||||||||||| |||  | ||||||||||||||||||||| ||| ||||||||||| || ||||||||    
T  33145922 taatcacccttagatttcagtcttatttattaacctttcataaaaaaaaaatacataccacccaccacc 33145854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 238
Target Start/End: Complemental strand, 42298048 - 42298005
Alignment:
Q  194 atttattaacctttcataaacaaaaatacataacatccaccaccc 238  Q
    |||||||||||||||||||| |||||||||||||||| |||||||    
T  42298048 atttattaacctttcataaa-aaaaatacataacatctaccaccc 42298005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 238
Target Start/End: Complemental strand, 24343759 - 24343688
Alignment:
Q  170 taatcacccttaaattgaaatcttatttattaacctttc---ataaacaaaaatacataacatccaccaccc 238  Q
    |||||||||||| |||  | |||||||||||||||||||   | ||| |||||||||||||| |||||||||    
T  24343759 taatcacccttagatttcagtcttatttattaacctttcaaaaaaaaaaaaaatacataacacccaccaccc 24343688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 37216932 - 37216981
Alignment:
Q  194 atttattaacctttcataaacaaaa-atacataacatccaccaccctatg 242  Q
    ||||||||| |||||||||| |||| |||||||||| |||||||||||||    
T  37216932 atttattaatctttcataaaaaaaaaatacataacacccaccaccctatg 37216981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 238
Target Start/End: Complemental strand, 30385586 - 30385542
Alignment:
Q  194 atttattaacctttcataaacaaaaatacataacatccaccaccc 238  Q
    ||||||||| |||||||||| | |||||||||||| |||||||||    
T  30385586 atttattaatctttcataaaaataaatacataacacccaccaccc 30385542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 42921334 - 42921286
Alignment:
Q  171 aatcacccttaaattgaaatcttatttattaacctttcataaacaaaaa 219  Q
    |||||||||||||||  | ||| |||||||||||||||||||| |||||    
T  42921334 aatcacccttaaatttcagtctcatttattaacctttcataaaaaaaaa 42921286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 238
Target Start/End: Original strand, 27523110 - 27523179
Alignment:
Q  169 ttaatcacccttaaattgaaatcttatttattaacctttcataaacaaaaatacataacatccaccaccc 238  Q
    ||||||||||||  |||  | |||||||||||||| ||||||||| |||||||||||||| ||| |||||    
T  27523110 ttaatcaccctttgattttagtcttatttattaacttttcataaaaaaaaatacataacacccatcaccc 27523179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 238
Target Start/End: Complemental strand, 25973617 - 25973550
Alignment:
Q  170 taatcacccttaaattgaaatcttatttattaacctttcataaacaaaaatacataacatccaccaccc 238  Q
    |||||||| |||||||  | ||| ||||||||| |||||||||| |||||||||||||| |||||||||    
T  25973617 taatcacctttaaatttcagtctcatttattaatctttcataaa-aaaaatacataacacccaccaccc 25973550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 238
Target Start/End: Complemental strand, 44094883 - 44094839
Alignment:
Q  194 atttattaacctttcataaacaaaaatacataacatccaccaccc 238  Q
    ||||||||| |||||||||| |||||||||||||| |||||||||    
T  44094883 atttattaatctttcataaagaaaaatacataacacccaccaccc 44094839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 22157393 - 22157452
Alignment:
Q  170 taatcacccttaaattgaaatcttatttattaacctttcat-aaacaaaaatacataaca 228  Q
    ||||||| ||||||||  |||||||||||||||| |||||| ||| ||||||||||||||    
T  22157393 taatcacacttaaatttcaatcttatttattaacatttcataaaagaaaaatacataaca 22157452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 238
Target Start/End: Complemental strand, 51621134 - 51621067
Alignment:
Q  175 acccttaaattgaaatcttatttattaacctttcataaac----aaaaatacataacatccaccaccc 238  Q
    |||||||||||  |||||||||||||||| ||| |||||     ||||||||||||||||||||||||    
T  51621134 acccttaaatttcaatcttatttattaacgttttataaaataaaaaaaatacataacatccaccaccc 51621067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 238
Target Start/End: Complemental strand, 25463886 - 25463817
Alignment:
Q  170 taatcacccttaaattgaaatcttatttattaacctttcataaacaaaaa-tacataacatccaccaccc 238  Q
    |||||||| ||| ||| || ||| ||||||||| |||||||||| ||||| ||||||||| |||||||||    
T  25463886 taatcacctttagatttaagtctcatttattaatctttcataaaaaaaaaatacataacacccaccaccc 25463817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 238
Target Start/End: Complemental strand, 41196 - 41152
Alignment:
Q  194 atttattaacctttcataaacaaaaatacataacatccaccaccc 238  Q
    ||||||||| |||||||||| |||||||||||||| |||||||||    
T  41196 atttattaatctttcataaaaaaaaatacataacacccaccaccc 41152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0665 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0665
Description:

Target: scaffold0665; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 3249 - 3200
Alignment:
Q  194 atttattaacctttcataaacaaaaa-tacataacatccaccaccctatg 242  Q
    ||||||||| |||||||||| ||||| ||||||||| |||||||||||||    
T  3249 atttattaatctttcataaaaaaaaaatacataacacccaccaccctatg 3200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0471 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 238
Target Start/End: Complemental strand, 13028 - 12983
Alignment:
Q  194 atttattaacctttcataaacaaaa-atacataacatccaccaccc 238  Q
    ||||||||| |||||||||| |||| ||||||||||||||||||||    
T  13028 atttattaatctttcataaaaaaaagatacataacatccaccaccc 12983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 238
Target Start/End: Complemental strand, 48035 - 47991
Alignment:
Q  194 atttattaacctttcataaacaaaaatacataacatccaccaccc 238  Q
    ||||||||| |||||||||| | |||||||||||| |||||||||    
T  48035 atttattaatctttcataaaaataaatacataacacccaccaccc 47991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University