View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5053_high_41 (Length: 207)

Name: NF5053_high_41

Description: NF5053

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF5053_high_41

[»] chr8 (1 HSPs)

[»] chr7 (1 HSPs)

Target: chr8 (Bit Score: 173; Significance: 3e-93; HSPs: 1)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 173; E-Value: 3e-93

Query Start/End: Original strand, 17 - 189

Target Start/End: Original strand, 10819203 - 10819375

Alignment:

Q	17	agtttccaataacaggaaggtcaataacaagacccaaatccaattgatagtcaatgtcccaatcagctccaatgtcctttgctaagctcatcaatatgct	116	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	10819203	agtttccaataacaggaaggtcaataacaagacccaaatccaattgatagtcaatgtcccaatcagctccaatgtcctttgctaagctcatcaatatgct	10819302	T

Q	117	gtagggcaccttcacaggtacatccaccattgttgtgtcctttgccttcaaagaccctggatctggtattgtc	189	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	10819303	gtagggcaccttcacaggtacatccaccattgttgtgtcctttgccttcaaagaccctggatctggtattgtc	10819375	T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 39; E-Value: 0.0000000000003

Query Start/End: Original strand, 22 - 96

Target Start/End: Complemental strand, 30031965 - 30031891

Alignment:

Q	22	ccaataacaggaaggtcaataacaagacccaaatccaattgatagtcaatgtcccaatcagctccaatgtccttt	96	Q
		\|\|\|\|\|\|\| \|\|\| \|\| \|\|\|\|\|\|\|\| \|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|
T	30031965	ccaataataggtagatcaataacgagaccaatatccaattgataatcaatgtcccaatcagcaccaatatccttt	30031891	T

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