View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5053_low_1 (Length: 1750)
Name: NF5053_low_1
Description: NF5053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5053_low_1 |
 | |
|
| [»] chr2 (4 HSPs) |
| |
|
| [»] chr1 (5 HSPs) |
| |
|
| [»] scaffold0020 (2 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 1649; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 1649; E-Value: 0
Query Start/End: Original strand, 7 - 1750
Target Start/End: Complemental strand, 32249685 - 32247943
Alignment:
| Q |
7 |
ggacatcatcaaagaagatgtagttaaagttgttctagaattcttcaccaccagttggattttgccaggattcaactctaacattattgctcttcttccg |
106 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32249685 |
ggacatcatcaaagaagatgtagttaaagctgttctagaattcttcaccaccagttggattttgccaggattcaactctaacattattgctcttcttcca |
32249586 |
T |
|
| Q |
107 |
aaaattccaaatgcttcatctatagaccaatacaaacctattgcaatggctaattttaaattcaaaatcatttcaaaagttattgctgtcagacttgctc |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32249585 |
aaaattccaaatgcttcatctatagaccaatacagacctattgcaatggctaattttaaattcaaaatcatttcaaaagttattgctgtcagacttgctc |
32249486 |
T |
|
| Q |
207 |
caatcatgcctactatcatttctgaccaacagatggggttcattcaccaaagaagtattaaggactgcttgtgcattgcttctgaagccactaatttatt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32249485 |
caatcatgcctactatcatttctgaccaacagatggggttcattcaccaaagaagtattaaggactgcttgtgcattgcttctgaagccactaatttatt |
32249386 |
T |
|
| Q |
307 |
acacaacaaatcctttgggggaaacttagcattgaaaattgatattacaatggcatttgacaccctggaatggccatttttattgaaagttctcaaaaca |
406 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32249385 |
acacaacaaatccttttggagaaacttagcattgaaaattgatattacaatggcatttgacaccctggaatggccatttttattgaaagttctcaaaaca |
32249286 |
T |
|
| Q |
407 |
tttggcttcaatgacatcttttgcaattggattcaggtaattctcaattcagattttctatctgtatcagtcaatggaaaagcacaaggttattttaact |
506 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32249285 |
tttggcttccatgacatcttttgcaattggattcaggtaattctcaattcagcttttctatctgtatcagtcaatggaaaagcacaaggttattttaact |
32249186 |
T |
|
| Q |
507 |
gcactaggggggtgaggcagggagaccccctatctcctctactcttttgtttggctgaagatgttttaagtagaagcattacaaagctggtagaagaagg |
606 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32249185 |
gcactaggggg-tgaggcagggagaccccctatctcctctactcttttgtttggctgaagatgttttaagtagaagcattacaaagctggtagaagaagg |
32249087 |
T |
|
| Q |
607 |
aaagcttgatcttatcaaaggccaccaggcacatctcagttccctgccacacattttatgcagataatcttatgattttctgcaaaggtaaaatgtcagg |
706 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
32249086 |
aaagcttgatcttatcaaaggc-accaggcacatcccagttccctgccacacattttatgcagatgatcttatgattttctgcaaaggtaaaatgtcagg |
32248988 |
T |
|
| Q |
707 |
attaaacaaccttaaagatttgtttcataaatatgccctgaattttggccaagtgataaactgttcaaagtcaaccatatactccaactctatttcaaat |
806 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32248987 |
attaaacaaccttaaagatttgtttcataaatatgccctgaattctggccaagtgataaactgttcaaagtcaaccatatactccaactctatttcaaat |
32248888 |
T |
|
| Q |
807 |
attagaatgaatagaacagtgcagttcctgaatttcaacataggcaccctccccttcaattacttggaggtgctcattttcaaaggaaaaccaaaagctt |
906 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32248887 |
attagaatgaatagaacagtgcagttcctgaatttcaacataggcaccctccccttcaattacttggaggtgctcattttcaaaggaaaaccaaaagctt |
32248788 |
T |
|
| Q |
907 |
ctcattttcaaccagttgtagacaagatttgcgtgaagctttcaacttggaaagcttcattgctctcaatggcaggtagagttcaattgataagatcagt |
1006 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32248787 |
ctcattttcaaccagttgtagacaagatttgcgtgaagctttcaacttggaaagcttcattgctctcaatggcaggtagagttcaattgataagatcagt |
32248688 |
T |
|
| Q |
1007 |
aattcaaagcatgatgatgtacaatatttctctatattcttggccagcttcactcattaagcaggttgaacaaaagattagaaatttcatatggagtgga |
1106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
32248687 |
aattcaaagcatgatgatgtacaatatttctctatattcttggccagcttcactcattaagcaggttgaacaaaagattagaaatttcatctggagtgga |
32248588 |
T |
|
| Q |
1107 |
gatcaggacaaaagaaagttggtcacagttgcttggaaaaagatttgctggccatcttctcaaggtggtttgaatcttaggtctttacatagcttgaaca |
1206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32248587 |
gatcaggacaaaagaaagttggtcacagttgcttggaaaaagatttgcaggccatcttctcaaggtggtttgaatcttaggtctttacatagcttgaaca |
32248488 |
T |
|
| Q |
1207 |
atgcttccaatcttaaattatgttgggaacttttgaattcggaaaaagcttgggcaaaacttttgagggatagagtggtgaaaaatgggaaaataattca |
1306 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32248487 |
atgcttccaatcttaaattatattgggaacttttgaattcggaaaaagcttgggcaaaacttttgagggatagagtggtgaaaaatgggaaaataattca |
32248388 |
T |
|
| Q |
1307 |
atataacatctactcttctctttggagtagcattaaagatgagtatccagtgattttggagaattctatctgaattttaggtaaaggaaataacattaat |
1406 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32248387 |
atatcacatctactcttctctttggagtagcattaaagatgagtatcaagtgattttggagaattctatctgaattttaggtaaaggaaataacattaat |
32248288 |
T |
|
| Q |
1407 |
ttttggaatgactgttggtgtggtgaatctttagctgctctttacaacatcccagaccacattagcagtcttctcacatcttcagtgagtgactatattc |
1506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32248287 |
ttttggaatgactgttggtgtggtgaatctttagctgctctttacaacatcccagaccacattagcagtcttctcacatcttcagtgagtgactatattc |
32248188 |
T |
|
| Q |
1507 |
acaatggcaatggaacatttcttttgaacttcaattgaattttcccaatcttagcaatcttgttcagcaagttactctacctttggaggaacaagaagac |
1606 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32248187 |
acaatggcaatggaacattccttttgaacttcaattgaattttcccaatcttagcaatcttgttcagcaagttactctacctttggaggaacaagaagac |
32248088 |
T |
|
| Q |
1607 |
agtttgcagtggaagcattctcaaggtggtgacttacaactcaa-gaagcttattctttcaaacatcagcaatttgaagagttgccttgggcaaagctga |
1705 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32248087 |
agtttgcagtggaagcattctcaaggtggtgacttacagctcaaggaagtttattctttcaaacatcagcaatttgaagagttgccttgggcaaagctga |
32247988 |
T |
|
| Q |
1706 |
cctggaatgttgatgttcccccatcaaagtcaatgtttgtctgga |
1750 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32247987 |
cctggaatgttgatgttcccccatcaaagtcaatgtttgtctgga |
32247943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 1e-29
Query Start/End: Original strand, 62 - 301
Target Start/End: Original strand, 30900507 - 30900746
Alignment:
| Q |
62 |
tggattttgccaggattcaactctaacattattgctcttcttccgaaaattccaaatgcttcatctatagaccaatacaaacctattgcaatggctaatt |
161 |
Q |
| |
|
||||| || ||||| ||||| || ||||||||| |||||||||| |||| || ||||||||| |||||||| || | || ||||||| ||||| |||| |
|
|
| T |
30900507 |
tggatatttccaggcttcaattcaaacattatttctcttcttcctaaaactctaaatgcttcttctatagatcatttcagacctattataatggtaaatt |
30900606 |
T |
|
| Q |
162 |
ttaaattcaaaatcatttcaaaagttattgctgtcagacttgctccaatcatgcctactatcatttctgaccaacagatggggttcattcaccaaagaag |
261 |
Q |
| |
|
| |||||||| || || ||||| |||||||| | | ||||||||||||||||||||| || || ||||| |||| || || |||||||| ||||| | |
|
|
| T |
30900607 |
tcaaattcaagattatatcaaatgttattgcagataaacttgctccaatcatgcctacaattatctctgaagaacatataggattcattcatcaaaggaa |
30900706 |
T |
|
| Q |
262 |
tattaaggactgcttgtgcattgcttctgaagccactaat |
301 |
Q |
| |
|
||| ||||| || || |||||||||| ||||||||||||| |
|
|
| T |
30900707 |
tatcaaggattgtttatgcattgcttatgaagccactaat |
30900746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 7e-16
Query Start/End: Original strand, 518 - 594
Target Start/End: Complemental strand, 22381501 - 22381425
Alignment:
| Q |
518 |
gtgaggcagggagaccccctatctcctctactcttttgtttggctgaagatgttttaagtagaagcattacaaagct |
594 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||||| | ||||||||||| |||||||||| ||| |||||||| |
|
|
| T |
22381501 |
gtgagacagggagaccccctatctcctcttctcttttgcatcgctgaagatgtgttaagtagaaacatcacaaagct |
22381425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 45; E-Value: 7e-16
Query Start/End: Original strand, 518 - 594
Target Start/End: Complemental strand, 22913527 - 22913451
Alignment:
| Q |
518 |
gtgaggcagggagaccccctatctcctctactcttttgtttggctgaagatgttttaagtagaagcattacaaagct |
594 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||||| | ||||||||||| |||||||||| ||| |||||||| |
|
|
| T |
22913527 |
gtgagacagggagaccccctatctcctcttctcttttgcatcgctgaagatgtgttaagtagaaacatcacaaagct |
22913451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 44 - 1117
Target Start/End: Complemental strand, 21854409 - 21853337
Alignment:
| Q |
44 |
gaattcttcaccaccagttggattttgccaggattcaactctaacattattgctcttcttccgaaaattccaaatgcttcatctatagaccaatacaaac |
143 |
Q |
| |
|
|||||||||||| | ||||||||||||| ||||| ||||| || |||||||| |||||||| ||| | |||||||| ||||| || ||||| |||| || |
|
|
| T |
21854409 |
gaattcttcacctctagttggattttgctaggatataactccaatattattgcacttcttccaaaagtgccaaatgcctcatcaattgaccagtacagac |
21854310 |
T |
|
| Q |
144 |
ctattgcaatggctaattttaaattcaaaatcatttcaaaagttattgctgtcagacttgctccaatcatgcctactatcatttctgaccaacagatggg |
243 |
Q |
| |
|
||||| ||||||| || ||||| ||||| ||||| ||||| || |||| | ||||||||||||||||||||| | ||||||||||| |||| ||| | |
|
|
| T |
21854309 |
ctatttcaatggccaactttaatttcaagatcatctcaaaggtcattgaagatagacttgctccaatcatgccttccatcatttctgaagaacaaatgag |
21854210 |
T |
|
| Q |
244 |
gttcattcaccaaagaagtattaaggactgcttgtgcattgcttctgaagccactaatttattacacaacaaatcctttgggggaaacttagcattgaaa |
343 |
Q |
| |
|
||||| || ||||| || | |||||||| ||||||||||||||||| || || |||| ||||||||| ||||||||||||| ||||| ||||| |
|
|
| T |
21854209 |
attcatacatcaaaggcacatcacagactgcttatgcattgcttctgaagctacaaacttatcgcacaacaaagcctttgggggaaatttagctctgaaa |
21854110 |
T |
|
| Q |
344 |
attgatattacaatggcatttgacaccctggaatggccatttttattgaaagttctcaaaacatttggcttcaatgacatcttttgcaattggattcagg |
443 |
Q |
| |
|
|||||||| |||| |||||||||||| | |||||| | |||||| ||| ||| || ||| | ||||| |||||| | | ||| ||||| | |||||| | |
|
|
| T |
21854109 |
attgatataacaaaggcatttgacactttagaatggtcttttttaatgagagtgcttaaatcttttggtttcaataataccttctgcaactagattcaag |
21854010 |
T |
|
| Q |
444 |
taattctcaattcagattttctatctgtatcagtcaatggaaaagcacaaggttattttaactgcactaggggggtgaggcagggagaccccctatctcc |
543 |
Q |
| |
|
| ||||||||||||| |||||| ||| |||||| ||||| |||||||| || ||||| || ||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
21854009 |
tgattctcaattcagcttttctttctatatcagcaaatgggaaagcacagggctatttcaattgcaccaggggggtgagacagggagaccccctatctcc |
21853910 |
T |
|
| Q |
544 |
tctactcttttgtttggctgaagatgttttaagtagaagcattacaaagctggtagaagaaggaaagcttgatcttatcaaaggccaccaggcacatctc |
643 |
Q |
| |
|
||| || |||||||||| ||| |||||| |||| ||||||||| | || || || ||||||| |||||||| || ||||| |||||| ||||| | |
|
|
| T |
21853909 |
tcttcttttttgtttggttgaggatgttctaagcagaagcatttccaaacttgtggaagaagacaagcttgaatcgattaaagg-caccagacacattta |
21853811 |
T |
|
| Q |
644 |
agttccctgccacacattttatgcagataatcttatgattttctgcaaaggtaaaatgtcaggattaaacaaccttaaagatttgtttcataaatatgcc |
743 |
Q |
| |
|
||||| | || ||||||||| | ||| |||||||||| ||||||||||||||| |||| || | ||||| || |||||||| ||||||| ||||||| |
|
|
| T |
21853810 |
tgttccttcacatacattttattctgatgatcttatgatattctgcaaaggtaaattgtctggtcttaacaatctcaaagatttatttcatagatatgcc |
21853711 |
T |
|
| Q |
744 |
ctgaattttggccaagtgataaactgttcaaagtcaaccatatactccaactctatttcaaatattagaatgaatagaacagtgcagttcctgaatttca |
843 |
Q |
| |
|
|| |||| ||| ||||| || |||||||||||||| || || || |||||||||||||||| | |||| | ||||| | ||||| || | ||||||| |
|
|
| T |
21853710 |
ctcaattctggtcaagtcatcaactgttcaaagtctacaatttattccaactctatttcaactgctagactaaatagtattgtgcaactcttaaatttca |
21853611 |
T |
|
| Q |
844 |
acataggcaccctccccttcaattacttggaggtgctcattttcaaaggaaaaccaaaagcttctcattttcaaccagttgtagacaagatttgcgtgaa |
943 |
Q |
| |
|
|||| ||||| |||| || || ||||| | || | ||||| |||| ||||||||||||||| | |||||||||| ||| || ||||| |||| |
|
|
| T |
21853610 |
acattggcacattcccttttaactacttaggtgttcctatttttaaagcgaaaccaaaagcttctttcctgcaaccagttgcagataaaatttgtatgaa |
21853511 |
T |
|
| Q |
944 |
gctttcaacttggaaagcttcattgctctcaatggcaggtagagttcaattgataagatcagtaattcaaagcatgatgatgtacaatatttctctatat |
1043 |
Q |
| |
|
|||| | ||||||||||||| |||||||| ||||| || ||| | ||||| | || ||||| || ||||||||||||||||| | ||| ||||| || |
|
|
| T |
21853510 |
actttaagcttggaaagcttctttgctctctatggctgggagaatccaattagtcaggtcagtgatccaaagcatgatgatgtatagtatatctctttac |
21853411 |
T |
|
| Q |
1044 |
tcttggccagcttcactcattaagcaggttgaacaaaagattagaaatttcatatggagtggagatcaggacaa |
1117 |
Q |
| |
|
|||||||| |||| ||| ||||||| || ||||| || |||||||| || || |||||||||||||| ||||| |
|
|
| T |
21853410 |
tcttggcctacttctctccttaagcaagtagaacagaaaattagaaactttatttggagtggagatcaagacaa |
21853337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 3e-24
Query Start/End: Original strand, 425 - 703
Target Start/End: Complemental strand, 16011942 - 16011665
Alignment:
| Q |
425 |
ttttgcaattggattcaggtaattctcaattcagattttctatctgtatcagtcaatggaaaagcacaaggttattttaactgcactaggggggtgaggc |
524 |
Q |
| |
|
||||| || |||||||| || ||||| ||||||| ||| ||||||| || || ||||| || |||||||||||||| || ||||| ||||| ||||| | |
|
|
| T |
16011942 |
ttttgtaaatggattcaagttattcttaattcagctttcttatctgtctctgtaaatggtaaggcacaaggttatttcaattgcacaaggggagtgagac |
16011843 |
T |
|
| Q |
525 |
agggagaccccctatctcctctactcttttgtttggctgaagatgttttaagtagaagcattacaaagctggtagaagaaggaaagcttgatcttatcaa |
624 |
Q |
| |
|
|||||||||| |||||||| || | ||||| ||||| ||||||||| |||||||||| ||| ||| || || || ||||| || |||||||| || || |
|
|
| T |
16011842 |
agggagaccctctatctccccttttattttgcttggcagaagatgttctaagtagaagtatttcaagacttgtggaggaaggtaaacttgatctcattaa |
16011743 |
T |
|
| Q |
625 |
aggccaccaggcacatctcagttccctgccacacattttatgcagataatcttatgattttctgcaaaggtaaaatgtc |
703 |
Q |
| |
|
||| ||| ||||| ||| ||||| | ||| | |||||||||||| |||| ||||| || |||||||| || ||||| |
|
|
| T |
16011742 |
agg-cacaaggcattgctcggttccatctcactctttttatgcagatgatctaatgatcttttgcaaaggaaagatgtc |
16011665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 1413 - 1512
Target Start/End: Complemental strand, 21853040 - 21852941
Alignment:
| Q |
1413 |
aatgactgttggtgtggtgaatctttagctgctctttacaacatcccagaccacattagcagtcttctcacatcttcagtgagtgactatattcacaatg |
1512 |
Q |
| |
|
||||||| |||||||||| | ||| | ||| |||||| || |||||||| |||||| ||||||||||||||||| |||||||| || ||||| |||| |
|
|
| T |
21853040 |
aatgactattggtgtggtcagtctcttgcttctctttttaatatcccagatcacatttctagtcttctcacatcttctgtgagtgattacattcataatg |
21852941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 131; Significance: 3e-67; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 3e-67
Query Start/End: Original strand, 1585 - 1750
Target Start/End: Complemental strand, 43577167 - 43577001
Alignment:
| Q |
1585 |
acctttggaggaacaagaagacagtttgcagtggaagcattctcaaggtggtgacttacaactcaag-aagcttattctttcaaacatcagcaatttgaa |
1683 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| || |
|
|
| T |
43577167 |
acctttggaggaacaagaagacagtctgcagtggaagcattctcaaggtggtgacttacagctcaaggaagcttattctttcaaacatcagcaatttcaa |
43577068 |
T |
|
| Q |
1684 |
gagttgccttgggcaaagctgacctggaatgttgatgttcccccatcaaagtcaatgtttgtctgga |
1750 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
43577067 |
gagttgtcttgggcaaagctgatttggaatgttgatgttcccccattaaagtcaatgtttgtctgga |
43577001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 518 - 586
Target Start/End: Complemental strand, 8636272 - 8636204
Alignment:
| Q |
518 |
gtgaggcagggagaccccctatctcctctactcttttgtttggctgaagatgttttaagtagaagcatt |
586 |
Q |
| |
|
||||| |||||||||||||| |||||||| || |||||||| |||||||| ||| | |||||| ||||| |
|
|
| T |
8636272 |
gtgagacagggagaccccctctctcctcttcttttttgtttagctgaagaggttcttagtagaggcatt |
8636204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 882 - 988
Target Start/End: Complemental strand, 46123821 - 46123715
Alignment:
| Q |
882 |
attttcaaaggaaaaccaaaagcttctcattttcaaccagttgtagacaagatttgcgtgaagctttcaacttggaaagcttcattgctctcaatggcag |
981 |
Q |
| |
|
||||||||||||||||||||||| ||| || || || ||| |||||||||| || ||||||| | | | ||||||||||| ||||| |||||||| | |
|
|
| T |
46123821 |
attttcaaaggaaaaccaaaagccagtcacttacagcctattgcagacaagattagcatgaagctattagcgtggaaagcttccttgctttcaatggccg |
46123722 |
T |
|
| Q |
982 |
gtagagt |
988 |
Q |
| |
|
| ||||| |
|
|
| T |
46123721 |
gaagagt |
46123715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 1082 - 1147
Target Start/End: Complemental strand, 19282267 - 19282202
Alignment:
| Q |
1082 |
gattagaaatttcatatggagtggagatcaggacaaaagaaagttggtcacagttgcttggaaaaa |
1147 |
Q |
| |
|
|||||||||||||||||||||||| ||| | ||||||||| ||||| || ||| |||||||||| |
|
|
| T |
19282267 |
gattagaaatttcatatggagtggtgatattgccaaaagaaaattggtgactgtttcttggaaaaa |
19282202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 518 - 567
Target Start/End: Original strand, 22214068 - 22214117
Alignment:
| Q |
518 |
gtgaggcagggagaccccctatctcctctactcttttgtttggctgaaga |
567 |
Q |
| |
|
||||| |||||||||||||||||||| || ||||| ||||| |||||||| |
|
|
| T |
22214068 |
gtgagacagggagaccccctatctccactcctcttctgttttgctgaaga |
22214117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 3e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 3e-18
Query Start/End: Original strand, 476 - 580
Target Start/End: Original strand, 30219879 - 30219983
Alignment:
| Q |
476 |
gtcaatggaaaagcacaaggttattttaactgcactaggggggtgaggcagggagaccccctatctcctctactcttttgtttggctgaagatgttttaa |
575 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||| |||||||| ||||||||||| |||| ||||| | || || |||||||||||||||| | |
|
|
| T |
30219879 |
gtcaatggaaaagcacaaggttatttcaactgtactagaggggtgagacagggagaccctttatcccctcttttattctgcctggctgaagatgttttga |
30219978 |
T |
|
| Q |
576 |
gtaga |
580 |
Q |
| |
|
||||| |
|
|
| T |
30219979 |
gtaga |
30219983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 3e-18; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 3e-18
Query Start/End: Original strand, 476 - 580
Target Start/End: Complemental strand, 17630010 - 17629906
Alignment:
| Q |
476 |
gtcaatggaaaagcacaaggttattttaactgcactaggggggtgaggcagggagaccccctatctcctctactcttttgtttggctgaagatgttttaa |
575 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||| |||||||| ||||||||||| |||| ||||| | || || |||||||||||||||| | |
|
|
| T |
17630010 |
gtcaatggaaaagcacaaggttatttcaactgtactagaggggtgagacagggagaccctttatcccctcttttattctgcctggctgaagatgttttga |
17629911 |
T |
|
| Q |
576 |
gtaga |
580 |
Q |
| |
|
||||| |
|
|
| T |
17629910 |
gtaga |
17629906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.0000000002
Query Start/End: Original strand, 518 - 581
Target Start/End: Original strand, 38620766 - 38620829
Alignment:
| Q |
518 |
gtgaggcagggagaccccctatctcctctactcttttgtttggctgaagatgttttaagtagaa |
581 |
Q |
| |
|
||||| || |||||||||||||||||||| |||||||||||||| || |||||| |||| |||| |
|
|
| T |
38620766 |
gtgagacaaggagaccccctatctcctctcctcttttgtttggcagaggatgttctaagcagaa |
38620829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 252
Target Start/End: Original strand, 21920515 - 21920618
Alignment:
| Q |
149 |
gcaatggctaattttaaattcaaaatcatttcaaaagttattgctgtcagacttgctccaatcatgcctactatcatttctgaccaacagatggggttca |
248 |
Q |
| |
|
|||||||| ||||| ||||| ||||| || ||||| |||||| |||||| ||||||| ||||||||| | |||| ||| | ||||||||||||||| |
|
|
| T |
21920515 |
gcaatggcaaatttaaaatttaaaataatctcaaagattattgttgtcaggcttgctcaaatcatgccaaacatcacttcccaggaacagatggggttca |
21920614 |
T |
|
| Q |
249 |
ttca |
252 |
Q |
| |
|
|||| |
|
|
| T |
21920615 |
ttca |
21920618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 3e-18; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 3e-18
Query Start/End: Original strand, 476 - 580
Target Start/End: Original strand, 32020277 - 32020381
Alignment:
| Q |
476 |
gtcaatggaaaagcacaaggttattttaactgcactaggggggtgaggcagggagaccccctatctcctctactcttttgtttggctgaagatgttttaa |
575 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||| |||||||| ||||||||||| |||| ||||| | || || |||||||||||||||| | |
|
|
| T |
32020277 |
gtcaatggaaaagcacaaggttatttcaactgtactagaggggtgagacagggagaccctttatcccctcttttattctgcctggctgaagatgttttga |
32020376 |
T |
|
| Q |
576 |
gtaga |
580 |
Q |
| |
|
||||| |
|
|
| T |
32020377 |
gtaga |
32020381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 500 - 576
Target Start/End: Original strand, 24613039 - 24613115
Alignment:
| Q |
500 |
tttaactgcactaggggggtgaggcagggagaccccctatctcctctactcttttgtttggctgaagatgttttaag |
576 |
Q |
| |
|
||||||||||||| || ||||||||||| || ||||| || || || ||||| |||||||||||||| |||||||| |
|
|
| T |
24613039 |
tttaactgcactaaaggagtgaggcagggggatcccctctcacccctcctcttctgtttggctgaagaagttttaag |
24613115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 492 - 579
Target Start/End: Complemental strand, 11178706 - 11178619
Alignment:
| Q |
492 |
aaggttattttaactgcactaggggggtgaggcagggagaccccctatctcctctactcttttgtttggctgaagatgttttaagtag |
579 |
Q |
| |
|
|||| ||||| |||||||| |||||||| || || |||||||| | |||||||| | |||||||| |||||||| ||||||||||| |
|
|
| T |
11178706 |
aaggatatttcaactgcaccaggggggtcagacaaggagaccctgtgtctcctcttttgttttgtttagctgaagaagttttaagtag |
11178619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0020 (Bit Score: 40; Significance: 0.0000000000007; HSPs: 2)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 40; E-Value: 0.0000000000007
Query Start/End: Original strand, 125 - 204
Target Start/End: Original strand, 127714 - 127793
Alignment:
| Q |
125 |
tctatagaccaatacaaacctattgcaatggctaattttaaattcaaaatcatttcaaaagttattgctgtcagacttgc |
204 |
Q |
| |
|
|||||||||||||| | || ||||||||||||||||||||||||||| | |||||||||||| | || | ||||||||| |
|
|
| T |
127714 |
tctatagaccaatataggccaattgcaatggctaattttaaattcaaagttatttcaaaagttctagcagacagacttgc |
127793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0020; HSP #2
Raw Score: 37; E-Value: 0.00000000004
Query Start/End: Original strand, 518 - 570
Target Start/End: Original strand, 128107 - 128159
Alignment:
| Q |
518 |
gtgaggcagggagaccccctatctcctctactcttttgtttggctgaagatgt |
570 |
Q |
| |
|
||||||||||| |||||||||||||| || |||||||||||||| |||||||| |
|
|
| T |
128107 |
gtgaggcagggtgaccccctatctccacttctcttttgtttggcagaagatgt |
128159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 500 - 576
Target Start/End: Complemental strand, 358610 - 358534
Alignment:
| Q |
500 |
tttaactgcactaggggggtgaggcagggagaccccctatctcctctactcttttgtttggctgaagatgttttaag |
576 |
Q |
| |
|
||||||||||||| || ||||||||||| || ||||| || || || ||||| |||||||||||||| |||||||| |
|
|
| T |
358610 |
tttaactgcactaaaggagtgaggcagggggatcccctctcacccctcctcttctgtttggctgaagaagttttaag |
358534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 518 - 570
Target Start/End: Complemental strand, 19216208 - 19216156
Alignment:
| Q |
518 |
gtgaggcagggagaccccctatctcctctactcttttgtttggctgaagatgt |
570 |
Q |
| |
|
||||||||||| ||||| ||||||||||| ||||||||| | ||||||||||| |
|
|
| T |
19216208 |
gtgaggcagggggaccctctatctcctcttctcttttgtattgctgaagatgt |
19216156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.00000001; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 500 - 576
Target Start/End: Complemental strand, 4906762 - 4906686
Alignment:
| Q |
500 |
tttaactgcactaggggggtgaggcagggagaccccctatctcctctactcttttgtttggctgaagatgttttaag |
576 |
Q |
| |
|
||||||||||||| || ||||||||||| || ||||| || || || ||||| |||||||||||||| |||||||| |
|
|
| T |
4906762 |
tttaactgcactaaaggagtgaggcagggggatcccctctcacccctcctcttctgtttggctgaagaagttttaag |
4906686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 500 - 576
Target Start/End: Complemental strand, 4932631 - 4932555
Alignment:
| Q |
500 |
tttaactgcactaggggggtgaggcagggagaccccctatctcctctactcttttgtttggctgaagatgttttaag |
576 |
Q |
| |
|
||||||||||||| || ||||||||||| || ||||| || || || ||||| |||||||||||||| |||||||| |
|
|
| T |
4932631 |
tttaactgcactaaaggagtgaggcagggggatcccctctcacccctcctcttctgtttggctgaagaagttttaag |
4932555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 500 - 576
Target Start/End: Original strand, 29757033 - 29757109
Alignment:
| Q |
500 |
tttaactgcactaggggggtgaggcagggagaccccctatctcctctactcttttgtttggctgaagatgttttaag |
576 |
Q |
| |
|
||||||||||||| || ||||||||||| || ||||| || || || ||||| |||||||||||||| |||||||| |
|
|
| T |
29757033 |
tttaactgcactaaaggagtgaggcagggggatcccctctcacccctcctcttctgtttggctgaagaagttttaag |
29757109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 546
Target Start/End: Complemental strand, 15801886 - 15801660
Alignment:
| Q |
320 |
tttgggggaaacttagcattgaaaattgatattacaatggcatttgacaccctggaatggccatttttattgaaagttctcaaaaca-tttggcttcaat |
418 |
Q |
| |
|
||||| || |||||||| |||| ||||||||||||| |||||||||||| |||||||||| ||| | | ||| ||| || || ||||| |||||| |
|
|
| T |
15801886 |
tttggtggtaacttagccctgaagattgatattacaaaggcatttgacactatggaatggccttttcttctccaag-tcttgaagcagtttggattcaat |
15801788 |
T |
|
| Q |
419 |
gacatcttttgcaattggattcaggtaattctcaattcagattttctatctgtatcagtcaatggaaaagcacaaggttattttaactgcactagggggg |
518 |
Q |
| |
|
|||| ||||| ||||||||| || |||||||| |||| |||||| ||| | || |||||||| || || ||||| ||||| || || || |||| |
|
|
| T |
15801787 |
gacactttttgtaattggattgcagtgattctcaagtcagcttttctctctatttctatcaatggagaatatcatggttactttaattgtacaagagggg |
15801688 |
T |
|
| Q |
519 |
tgaggcagggagaccccctatctcctct |
546 |
Q |
| |
|
|||| |||||||||||| |||| ||||| |
|
|
| T |
15801687 |
tgagacagggagaccccttatcccctct |
15801660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 515 - 576
Target Start/End: Original strand, 9215590 - 9215651
Alignment:
| Q |
515 |
ggggtgaggcagggagaccccctatctcctctactcttttgtttggctgaagatgttttaag |
576 |
Q |
| |
|
||||| |||||||||||||| || ||||| || ||||||||| | |||||||| |||||||| |
|
|
| T |
9215590 |
ggggtcaggcagggagacccactttctccacttctcttttgtattgctgaagacgttttaag |
9215651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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