View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5053_low_10 (Length: 411)
Name: NF5053_low_10
Description: NF5053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5053_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 97; Significance: 1e-47; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 35 - 135
Target Start/End: Original strand, 9080845 - 9080945
Alignment:
| Q |
35 |
tttctcaaaagatataatatattaataatacacccatgcatatatgtggactaacttgtatatatgtctctattcatatcttttattacacttggtgtgt |
134 |
Q |
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| T |
9080845 |
tttctcaaaagatataatatattaataatacacccatgcatatatgtggactaacttgtatatatgtctctattcatatcttttattacacttagtgtgt |
9080944 |
T |
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| Q |
135 |
c |
135 |
Q |
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| T |
9080945 |
c |
9080945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 191 - 316
Target Start/End: Original strand, 9081001 - 9081126
Alignment:
| Q |
191 |
tgtttacttttcatttgtaatatgtattagttttggtaaagataaaatacnnnnnnnggtaacaccaaaatcttatatcttcttatatattggcgaaaaa |
290 |
Q |
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| T |
9081001 |
tgtttacttttcatttgtaatatgtattagttttggtaaagataaaatacaaaaaaaggtcacaccaaaatcttatatcttcttatatattggcgaaaaa |
9081100 |
T |
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| Q |
291 |
atgaattaattgacagaaaaaataat |
316 |
Q |
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| T |
9081101 |
atgaattaattgacagcaaaattaat |
9081126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 344 - 401
Target Start/End: Original strand, 9081222 - 9081279
Alignment:
| Q |
344 |
tattaattactttttgtgcaaaaatctactaaaaattgagttcatctacttgcctatg |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9081222 |
tattaattactttttgtgcaaaaatctactaaaaattgagttcatctacttgcctatg |
9081279 |
T |
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