View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5053_low_18 (Length: 316)

Name: NF5053_low_18
Description: NF5053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5053_low_18
NF5053_low_18
[»] chr5 (5 HSPs)
chr5 (185-316)||(40811349-40811481)
chr5 (185-316)||(27756538-27756669)
chr5 (185-316)||(16309852-16309983)
chr5 (185-241)||(16308809-16308864)
chr5 (185-241)||(27755504-27755557)
[»] chr2 (10 HSPs)
chr2 (185-316)||(37394063-37394194)
chr2 (185-316)||(44464843-44464974)
chr2 (185-272)||(8803063-8803150)
chr2 (185-316)||(44421095-44421226)
chr2 (185-309)||(472902-473025)
chr2 (185-243)||(44420043-44420101)
chr2 (185-255)||(8802040-8802108)
chr2 (185-242)||(34591954-34592011)
chr2 (185-300)||(44463755-44463866)
chr2 (185-233)||(9109181-9109229)
[»] chr1 (5 HSPs)
chr1 (185-316)||(13209750-13209881)
chr1 (185-316)||(7185609-7185740)
chr1 (185-241)||(7184565-7184620)
chr1 (185-316)||(26646583-26646713)
chr1 (185-270)||(13210876-13210960)
[»] chr3 (2 HSPs)
chr3 (185-316)||(30700471-30700602)
chr3 (185-302)||(30701595-30701711)
[»] chr4 (2 HSPs)
chr4 (185-309)||(42889564-42889688)
chr4 (185-316)||(54536449-54536580)
[»] chr8 (3 HSPs)
chr8 (185-241)||(15279395-15279450)
chr8 (185-241)||(15459764-15459819)
chr8 (185-316)||(3157792-3157921)
[»] chr6 (2 HSPs)
chr6 (248-315)||(33469625-33469692)
chr6 (186-243)||(1444997-1445054)


Alignment Details
Target: chr5 (Bit Score: 121; Significance: 5e-62; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 185 - 316
Target Start/End: Original strand, 40811349 - 40811481
Alignment:
Q  185 tttttaatttgaaa-ttttgttaattcgtgtttttgaattgcgtccctctgtaaattttcaatcttggatttggttcctataacattgttactggatatc 283  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  40811349 tttttaatttgaaaattttgttaattcgtgtttttgaattgcgtccctctgtaaattttcaatcttggatttggttcctataacattgtcactggatatc 40811448  T
Q  284 tggaacgacgcataagcctcacttgccatgtca 316  Q
    |||||||||||||||||||||||||||||||||    
T  40811449 tggaacgacgcataagcctcacttgccatgtca 40811481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 185 - 316
Target Start/End: Original strand, 27756538 - 27756669
Alignment:
Q  185 tttttaatttgaaattttgttaattcgtgtttttgaattgcgtccctctgtaaattttcaatcttggatttggttcctataacattgttactggatatct 284  Q
    |||||||||| || ||||| ||| ||||||||||||||| | ||||||||||| |||||  | |||||||| || |||||||| |||  |||||| ||||    
T  27756538 tttttaatttaaagttttgctaagtcgtgtttttgaatttcatccctctgtaagttttcgtttttggatttagtccctataaccttgccactggacatct 27756637  T
Q  285 ggaacgacgcataagcctcacttgccatgtca 316  Q
    |||| ||| |||||||||||||||||||||||    
T  27756638 ggaatgacacataagcctcacttgccatgtca 27756669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 185 - 316
Target Start/End: Original strand, 16309852 - 16309983
Alignment:
Q  185 tttttaatttgaaattttgttaattcgtgtttttgaattgcgtccctctgtaaattttcaatcttggatttggttcctataacattgttactggatatct 284  Q
    |||||||||| || ||||| ||| ||||||||||||||| | ||||||||||| |||||  | |||||||| || |||||||  |||  | | || ||||    
T  16309852 tttttaatttaaagttttgctaagtcgtgtttttgaatttcatccctctgtaagttttcgtttttggatttagtccctataatcttgccatttgacatct 16309951  T
Q  285 ggaacgacgcataagcctcacttgccatgtca 316  Q
    |||| ||| |||||||||||||||||| ||||    
T  16309952 ggaatgacacataagcctcacttgccacgtca 16309983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 241
Target Start/End: Complemental strand, 16308864 - 16308809
Alignment:
Q  185 tttttaatttgaaattttgttaattcgtgtttttgaattgcgtccctctgtaaattt 241  Q
    |||||||||| ||||||||||| ||| ||||||| |||| |||||||||||||||||    
T  16308864 tttttaatttaaaattttgtta-ttcttgttttttaatttcgtccctctgtaaattt 16308809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 241
Target Start/End: Complemental strand, 27755557 - 27755504
Alignment:
Q  185 tttttaatttgaaattttgttaattcgtgtttttgaattgcgtccctctgtaaattt 241  Q
    |||||||||| ||||||||||| |||||  ||||||||| |||||||||||||||||    
T  27755557 tttttaatttaaaattttgtta-ttcgt--ttttgaatttcgtccctctgtaaattt 27755504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 6e-28; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 185 - 316
Target Start/End: Complemental strand, 37394194 - 37394063
Alignment:
Q  185 tttttaatttgaaattttgttaattcgtgtttttgaattgcgtccctctgtaaattttcaatcttggatttggttcctataacattgttactggatatct 284  Q
    |||||| ||||||||||||| ||||| |||||||||||||| ||||||| ||||| ||| || |||||||||||||||||||| |||| | |||| ||||    
T  37394194 tttttagtttgaaattttgtaaattcatgtttttgaattgcatccctctctaaatcttccattttggatttggttcctataaccttgtcagtggacatct 37394095  T
Q  285 ggaacgacgcataagcctcacttgccatgtca 316  Q
    | ||||||  |||| |||||||||||| ||||    
T  37394094 gaaacgacttataaacctcacttgccacgtca 37394063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 185 - 316
Target Start/End: Original strand, 44464843 - 44464974
Alignment:
Q  185 tttttaatttgaaattttgttaattcgtgtttttgaattgcgtccctctgtaaattttcaatcttggatttggttcctataacattgttactggatatct 284  Q
    |||||||||| || ||||| ||| ||||||||||||||| | ||||||||||| |||||  | |||||||| || |||||||| |||  |||||| ||||    
T  44464843 tttttaatttaaagttttgctaagtcgtgtttttgaatttcatccctctgtaagttttcgtttttggatttagtccctataaccttgccactggacatct 44464942  T
Q  285 ggaacgacgcataagcctcacttgccatgtca 316  Q
    |||||||| |||||||||||||||||| ||||    
T  44464943 ggaacgacacataagcctcacttgccacgtca 44464974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 185 - 272
Target Start/End: Original strand, 8803063 - 8803150
Alignment:
Q  185 tttttaatttgaaattttgttaattcgtgtttttgaattgcgtccctctgtaaattttcaatcttggatttggttcctataacattgt 272  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||  | |||||||| || |||||||| ||||    
T  8803063 tttttaatttgaaattttgttaattcatgtttttgaatttcgtccctctgtaaattttcgtttttggatttagtccctataaccttgt 8803150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 185 - 316
Target Start/End: Original strand, 44421095 - 44421226
Alignment:
Q  185 tttttaatttgaaattttgttaattcgtgtttttgaattgcgtccctctgtaaattttcaatcttggatttggttcctataacattgttactggatatct 284  Q
    |||||||||| |||||||||||| ||||||||||||| |  ||||||||||| ||||| | | |||||||||||  ||||||| |||  | |||| ||||    
T  44421095 tttttaatttaaaattttgttaagtcgtgtttttgaagttggtccctctgtatattttaagttttggatttggtctctataaccttgccattggacatct 44421194  T
Q  285 ggaacgacgcataagcctcacttgccatgtca 316  Q
     ||||||| ||||||||||| |||||||||||    
T  44421195 agaacgacacataagcctcagttgccatgtca 44421226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 185 - 309
Target Start/End: Complemental strand, 473025 - 472902
Alignment:
Q  185 tttttaatttgaaattttgttaattcgtgtttttgaattgcgtccctctgtaaattttcaatcttggatttggttcctataacattgttactggatatct 284  Q
    |||||||||||||||||||||||||| || ||||||||| |||||||||||||| |||   | || |||||||| ||||||||  | | | |||| ||||    
T  473025 tttttaatttgaaattttgttaattcatg-ttttgaatttcgtccctctgtaaacttttgttttttgatttggtccctataaccatatcattggacatct 472927  T
Q  285 ggaacgacgcataagcctcacttgc 309  Q
    |||||||| ||||||||||||||||    
T  472926 ggaacgacacataagcctcacttgc 472902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 185 - 243
Target Start/End: Complemental strand, 44420101 - 44420043
Alignment:
Q  185 tttttaatttgaaattttgttaattcgtgtttttgaattgcgtccctctgtaaattttc 243  Q
    |||||||||| |||||||||||| || |||||||||||| |||||||||||||||||||    
T  44420101 tttttaatttaaaattttgttaagtcatgtttttgaatttcgtccctctgtaaattttc 44420043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 185 - 255
Target Start/End: Complemental strand, 8802108 - 8802040
Alignment:
Q  185 tttttaatttgaaattttgttaattcgtgtttttgaattgcgtccctctgtaaattttcaatcttggattt 255  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||| ||| ||||||||| | ||||||||    
T  8802108 tttttaatttgaaattt-gttaattcgtgtttttgaatttcgtccc-ctggaaattttcatttttggattt 8802040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 242
Target Start/End: Complemental strand, 34592011 - 34591954
Alignment:
Q  185 tttttaatttgaaattttgttaattcgtgtttttgaattgcgtccctctgtaaatttt 242  Q
    |||||||||||||||||| |||| |||||||||||||||  |||||||| ||||||||    
T  34592011 tttttaatttgaaattttcttaaatcgtgtttttgaattttgtccctctataaatttt 34591954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 300
Target Start/End: Complemental strand, 44463866 - 44463755
Alignment:
Q  185 tttttaatttgaaattttgttaattcgtgtttttgaattgcgtccctctgtaaattttcaatcttggatttggttcctataacattgttactggatatct 284  Q
    |||||||||| ||||||||||| |||   |||||||||| ||||||||||||||||| |  | |||||||||||  || |||| |||  | | || ||||    
T  44463866 tttttaatttaaaattttgtta-ttc---tttttgaatttcgtccctctgtaaatttgcgtttttggatttggtcactgtaaccttgccatttgacatct 44463771  T
Q  285 ggaacgacgcataagc 300  Q
    ||||||||||||||||    
T  44463770 ggaacgacgcataagc 44463755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 233
Target Start/End: Complemental strand, 9109229 - 9109181
Alignment:
Q  185 tttttaatttgaaattttgttaattcgtgtttttgaattgcgtccctct 233  Q
    |||||||||||||||||||||||| | |||||||||||| | |||||||    
T  9109229 tttttaatttgaaattttgttaatccttgtttttgaatttcttccctct 9109181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 185 - 316
Target Start/End: Complemental strand, 13209881 - 13209750
Alignment:
Q  185 tttttaatttgaaattttgttaattcgtgtttttgaattgcgtccctctgtaaattttcaatcttggatttggttcctataacattgttactggatatct 284  Q
    |||||||||| |||||||||| | |||||||||||||||  |||||||| || ||||||  | ||||||||||| |||||||| |||  | |||| ||||    
T  13209881 tttttaatttaaaattttgtttagtcgtgtttttgaatttggtccctctatatattttcggttttggatttggtccctataaccttgccattggacatct 13209782  T
Q  285 ggaacgacgcataagcctcacttgccatgtca 316  Q
     ||||||| ||||||||||| |||||||||||    
T  13209781 agaacgacacataagcctcagttgccatgtca 13209750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 185 - 316
Target Start/End: Original strand, 7185609 - 7185740
Alignment:
Q  185 tttttaatttgaaattttgttaattcgtgtttttgaattgcgtccctctgtaaattttcaatcttggatttggttcctataacattgttactggatatct 284  Q
    |||||||||| || ||||| ||| ||||||||||||||| | ||||||||||| |||||  | |||||||| || |||||||| |||  |||||| ||||    
T  7185609 tttttaatttaaagttttgctaagtcgtgtttttgaatttcatccctctgtaagttttcgtttttggatttagtccctataaccttgccactggacatct 7185708  T
Q  285 ggaacgacgcataagcctcacttgccatgtca 316  Q
    |||| ||| |||||| ||||||||||| ||||    
T  7185709 ggaatgacacataagtctcacttgccacgtca 7185740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 185 - 241
Target Start/End: Complemental strand, 7184620 - 7184565
Alignment:
Q  185 tttttaatttgaaattttgttaattcgtgtttttgaattgcgtccctctgtaaattt 241  Q
    |||||||||| ||||||||||| ||| |||||||||||| |||||||||||||||||    
T  7184620 tttttaatttaaaattttgtta-ttcctgtttttgaatttcgtccctctgtaaattt 7184565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 185 - 316
Target Start/End: Original strand, 26646583 - 26646713
Alignment:
Q  185 tttttaatttgaaattttgttaattcgtgtttttgaattgcgtccctctgtaaattttcaatcttggatttggttcctataacattgttactggatatct 284  Q
    |||||||||||||||||||||||||| || |||| ||||  ||||| || ||||||||   | || |||||||| | |||||| |||| |||    | ||    
T  26646583 tttttaatttgaaattttgttaattcatg-ttttcaattttgtcccgctataaatttttgtttttcgatttggtccatataaccttgtcactaatcacct 26646681  T
Q  285 ggaacgacgcataagcctcacttgccatgtca 316  Q
    | |||||| |||||||||||||||||||||||    
T  26646682 gaaacgacacataagcctcacttgccatgtca 26646713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 270
Target Start/End: Original strand, 13210876 - 13210960
Alignment:
Q  185 tttttaatttgaaattttgttaattcgtgtttttgaattgcgtccctctgtaaattttcaatcttggatttggttcctataacatt 270  Q
    |||||||||| ||||||||| || |  ||||| ||||||  ||||||||||||||||||  | |||| |||||| |||||||||||    
T  13210876 tttttaatttaaaattttgtaaagta-tgtttctgaattttgtccctctgtaaattttcgtttttggttttggtccctataacatt 13210960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 185 - 316
Target Start/End: Complemental strand, 30700602 - 30700471
Alignment:
Q  185 tttttaatttgaaattttgttaattcgtgtttttgaattgcgtccctctgtaaattttcaatcttggatttggttcctataacattgttactggatatct 284  Q
    |||||||||| || ||||| ||| |||| |||||||||| | ||||||||||| |||||  | |||||||| || |||||||| |||  |||||| || |    
T  30700602 tttttaatttaaagttttgctaagtcgtttttttgaatttcatccctctgtaagttttcgtttttggatttagtccctataaccttgccactggacattt 30700503  T
Q  285 ggaacgacgcataagcctcacttgccatgtca 316  Q
    |||| ||| |||||||||||||||||||||||    
T  30700502 ggaatgacacataagcctcacttgccatgtca 30700471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 185 - 302
Target Start/End: Original strand, 30701595 - 30701711
Alignment:
Q  185 tttttaatttgaaattttgttaattcgtgtttttgaattgcgtccctctgtaaattttcaatcttggatttggttcctataacattgttactggatatct 284  Q
    |||||||||| ||||||||||| ||| |||||||||||| ||||||| ||||||||| |  | ||||||||||| ||| |||| |||  | | || ||||    
T  30701595 tttttaatttaaaattttgtta-ttcctgtttttgaatttcgtccctttgtaaatttgcgtttttggatttggtccctgtaactttgccatttgacatct 30701693  T
Q  285 ggaacgacgcataagcct 302  Q
    |||||||| |||||||||    
T  30701694 ggaacgacacataagcct 30701711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 185 - 309
Target Start/End: Original strand, 42889564 - 42889688
Alignment:
Q  185 tttttaatttgaaattttgttaattcgtgtttttgaattgcgtccctctgtaaattttcaatcttggatttggttcctataacattgttactggatatct 284  Q
    |||||||||| || ||||| ||| ||||||||||||||| | ||||||||||| |||||  | |||||||| || |||||||| |||  | |||| ||||    
T  42889564 tttttaatttaaagttttgctaagtcgtgtttttgaatttcatccctctgtaagttttcgtttttggatttagtccctataaccttgccattggacatct 42889663  T
Q  285 ggaacgacgcataagcctcacttgc 309  Q
    |||| ||| ||||||||||||||||    
T  42889664 ggaatgacacataagcctcacttgc 42889688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 185 - 316
Target Start/End: Original strand, 54536449 - 54536580
Alignment:
Q  185 tttttaatttgaaattttgttaattcgtgtttttgaattgcgtccctctgtaaattttcaatcttggatttggttcctataacattgttactggatatct 284  Q
    |||||||||| |||||||||| | |||||||||||||||  ||||||||||| ||||||  | |||||||||||  ||||||| ||   | |||| ||||    
T  54536449 tttttaatttaaaattttgtttagtcgtgtttttgaatttggtccctctgtatattttcggttttggatttggtctctataaccttaccattggacatct 54536548  T
Q  285 ggaacgacgcataagcctcacttgccatgtca 316  Q
     ||||||| ||||||||||| || ||||||||    
T  54536549 agaacgacacataagcctcagtttccatgtca 54536580  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 185 - 241
Target Start/End: Original strand, 15279395 - 15279450
Alignment:
Q  185 tttttaatttgaaattttgttaattcgtgtttttgaattgcgtccctctgtaaattt 241  Q
    |||||||||| ||||||||||| ||| |||||||||||| |||||||||||||||||    
T  15279395 tttttaatttaaaattttgtta-ttcctgtttttgaatttcgtccctctgtaaattt 15279450  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 185 - 241
Target Start/End: Original strand, 15459764 - 15459819
Alignment:
Q  185 tttttaatttgaaattttgttaattcgtgtttttgaattgcgtccctctgtaaattt 241  Q
    |||||||||| ||||||||||| ||| |||||||||||| |||||||||||||||||    
T  15459764 tttttaatttaaaattttgtta-ttcctgtttttgaatttcgtccctctgtaaattt 15459819  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 185 - 316
Target Start/End: Original strand, 3157792 - 3157921
Alignment:
Q  185 tttttaatttgaaattttgttaattcgtgtttttgaattgcgtccctctgtaaattttcaatcttggatttggttcctataacattgttactggatatct 284  Q
    |||||||||| || ||||| ||| ||||||||||||||| | ||||||||||| ||||   | ||||| || || |||||||| |||  | |||| ||||    
T  3157792 tttttaatttaaagttttgctaagtcgtgtttttgaatttcatccctctgtaagtttttgtttttgga-ttagtccctataaccttgcca-tggacatct 3157889  T
Q  285 ggaacgacgcataagcctcacttgccatgtca 316  Q
    ||||  || |||||||||||||||||| ||||    
T  3157890 ggaataacacataagcctcacttgccacgtca 3157921  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 248 - 315
Target Start/End: Original strand, 33469625 - 33469692
Alignment:
Q  248 ttggatttggttcctataacattgttactggatatctggaacgacgcataagcctcacttgccatgtc 315  Q
    ||||||||||| |||||||| |||  ||| |||||||||||| || |||||| |||||||||||||||    
T  33469625 ttggatttggtccctataaccttgccactagatatctggaactacacataagtctcacttgccatgtc 33469692  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 243
Target Start/End: Original strand, 1444997 - 1445054
Alignment:
Q  186 ttttaatttgaaattttgttaattcgtgtttttgaattgcgtccctctgtaaattttc 243  Q
    ||||||||| ||||||||| | || ||| ||||||||| ||||||||||||| |||||    
T  1444997 ttttaatttcaaattttgtaacttagtgattttgaatttcgtccctctgtaatttttc 1445054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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