View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5053_low_19 (Length: 316)
Name: NF5053_low_19
Description: NF5053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5053_low_19 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 124 - 305
Target Start/End: Original strand, 40879689 - 40879865
Alignment:
| Q |
124 |
tctcacaatatattggaatgaataaacttgatcctttcaatccaaaagtgaattctctcctttctctttaatacttcttcttattctaaaaacaataaac |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40879689 |
tctcacaatatattggaatgaataaacttgatcctttcaatccaaaagtgaattctctcctttctctttaatacttcttcttattctaaaaacaataaac |
40879788 |
T |
|
| Q |
224 |
ttgttccaacatagaagatttattgaaattaaagcaacaacttctgcttcacctatctcttcatgcatcacaactccttcat |
305 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40879789 |
ttgttccaacatagaagatttattgaaa-----gcgacaacttttgcttcacctatctcttcatgcatcacaactccttcat |
40879865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 20 - 128
Target Start/End: Original strand, 40879527 - 40879635
Alignment:
| Q |
20 |
ggttgtgtacaaatatattattgtttttgtttggatctccattgattatatatgtttcacctctttcacaatttggtggcctcttggagtaattttatca |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40879527 |
ggttgtgtacaaatatattattgtttttgtttggatctccattgattatatatgtttcacctctttcacaatttggtggcctcttggagtaattttatca |
40879626 |
T |
|
| Q |
120 |
cacttctca |
128 |
Q |
| |
|
||||||||| |
|
|
| T |
40879627 |
cacttctca |
40879635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University