View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5053_low_22 (Length: 298)
Name: NF5053_low_22
Description: NF5053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5053_low_22 |
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| [»] chr7 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 171; Significance: 7e-92; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 120 - 298
Target Start/End: Original strand, 37140597 - 37140775
Alignment:
| Q |
120 |
tactgtacaggaccaagttaaagcaaacggaagtggattgtgaatacttaaaaagatgttgtgagactctaacagaagaaaataaaagattacaaaagga |
219 |
Q |
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| T |
37140597 |
tactgtacaggaccaagtcaaagcaaacggaagtggattgtgaatacttaaaaagatgttgtgagactctgacagaagaaaataaaagattacaaaagga |
37140696 |
T |
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| Q |
220 |
acttcaggaattgagagctttgaaaacttctcaaccattctacatgcaacttccagctaccactctcactatgtgtcct |
298 |
Q |
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| T |
37140697 |
acttcaggaattgagagctttgaaaacttctcaaccattctacatgcaacttccagctaccactctcactatgtgtcct |
37140775 |
T |
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Target: chr1 (Bit Score: 111; Significance: 5e-56; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 128 - 298
Target Start/End: Original strand, 23336623 - 23336793
Alignment:
| Q |
128 |
aggaccaagttaaagcaaacggaagtggattgtgaatacttaaaaagatgttgtgagactctaacagaagaaaataaaagattacaaaaggaacttcagg |
227 |
Q |
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| T |
23336623 |
aggacaaagttaaagcaaacagaagtggattgtgagtatttgaagagatgttgtgagacattaacagaagagaatagaagattacaaaaggaacttcaag |
23336722 |
T |
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| Q |
228 |
aattgagagctttgaaaacttctcaaccattctacatgcaacttccagctaccactctcactatgtgtcct |
298 |
Q |
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| T |
23336723 |
agcttagagctttgaaaactactcaaccattctacatgcaacttccagctaccactctcactatgtgtcct |
23336793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 128 - 294
Target Start/End: Complemental strand, 25901716 - 25901550
Alignment:
| Q |
128 |
aggaccaagttaaagcaaacggaagtggattgtgaatacttaaaaagatgttgtgagactctaacagaagaaaataaaagattacaaaaggaacttcagg |
227 |
Q |
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||||| ||||| |||||||| ||||||||||||||||||||||| ||||| ||||| || |||||||||||||||| || |||| ||||||||||| | |
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| T |
25901716 |
aggactaagttgaagcaaacagaagtggattgtgaatacttaaagagatgctgtgaaacactaacagaagaaaataggaggctacacaaggaacttcaag |
25901617 |
T |
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| Q |
228 |
aattgagagctttgaaaacttctcaaccattctacatgcaacttccagctaccactctcactatgtg |
294 |
Q |
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| T |
25901616 |
aattaagagctttaaaaacttcaaatccattcaacatgcaattaccagcaactactttaactatgtg |
25901550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 127 - 192
Target Start/End: Original strand, 891119 - 891184
Alignment:
| Q |
127 |
caggaccaagttaaagcaaacggaagtggattgtgaatacttaaaaagatgttgtgagactctaac |
192 |
Q |
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| T |
891119 |
caggaccaagttgaagcaaactgaagtggattgtgagtacttgaagagatgctgtgagactctaac |
891184 |
T |
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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 268
Target Start/End: Original strand, 4059100 - 4059241
Alignment:
| Q |
127 |
caggaccaagttaaagcaaacggaagtggattgtgaatacttaaaaagatgttgtgagactctaacagaagaaaataaaagattacaaaaggaacttcag |
226 |
Q |
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|||||| ||||| |||||||| || || |||||||||| || |||||||||||||||| |||||| || ||||||| | | || ||||| ||| | || |
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| T |
4059100 |
caggactaagttgaagcaaacagaggtagattgtgaatttttgaaaagatgttgtgagaatctaacggatgaaaatagacggttgcaaaaagaagtgcaa |
4059199 |
T |
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| Q |
227 |
gaattgagagctttgaaaacttctcaaccattctacatgcaa |
268 |
Q |
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| T |
4059200 |
gagttaagagcattgaaactttccccacaattctacatgcaa |
4059241 |
T |
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