View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5053_low_24 (Length: 288)

Name: NF5053_low_24
Description: NF5053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5053_low_24
NF5053_low_24
[»] chr2 (20 HSPs)
chr2 (10-288)||(19317508-19317782)
chr2 (67-171)||(37715946-37716052)
chr2 (59-171)||(23914847-23914951)
chr2 (66-153)||(41554752-41554837)
chr2 (113-169)||(32217012-32217068)
chr2 (121-169)||(32226315-32226363)
chr2 (97-167)||(32908795-32908863)
chr2 (62-150)||(9740514-9740600)
chr2 (97-149)||(32630611-32630661)
chr2 (80-155)||(18372066-18372139)
chr2 (108-152)||(36845002-36845046)
chr2 (91-153)||(27058703-27058763)
chr2 (119-173)||(40324235-40324289)
chr2 (121-154)||(15508751-15508784)
chr2 (124-153)||(42949928-42949957)
chr2 (61-109)||(6675015-6675063)
chr2 (121-173)||(19134022-19134074)
chr2 (55-136)||(21392019-21392095)
chr2 (120-152)||(39822484-39822516)
chr2 (121-153)||(42651929-42651961)
[»] chr8 (19 HSPs)
chr8 (63-176)||(18887286-18887397)
chr8 (57-171)||(14988226-14988342)
chr8 (55-142)||(14987805-14987888)
chr8 (55-135)||(13206050-13206127)
chr8 (110-172)||(29005664-29005725)
chr8 (10-64)||(40155056-40155109)
chr8 (97-151)||(2292990-2293042)
chr8 (105-152)||(6235369-6235416)
chr8 (112-151)||(15147688-15147727)
chr8 (119-173)||(14031619-14031673)
chr8 (119-153)||(14190605-14190639)
chr8 (121-153)||(444552-444584)
chr8 (108-148)||(5934639-5934679)
chr8 (132-168)||(11929495-11929531)
chr8 (121-153)||(13805700-13805732)
chr8 (55-107)||(14902093-14902145)
chr8 (121-153)||(15898926-15898958)
chr8 (120-152)||(29283842-29283874)
chr8 (121-153)||(45440817-45440849)
[»] chr3 (14 HSPs)
chr3 (55-153)||(35258786-35258882)
chr3 (55-162)||(36640446-36640552)
chr3 (55-153)||(42839992-42840088)
chr3 (55-153)||(42522015-42522110)
chr3 (55-153)||(36637221-36637317)
chr3 (55-105)||(44941065-44941115)
chr3 (55-111)||(44941399-44941455)
chr3 (119-173)||(3806817-3806871)
chr3 (119-153)||(38358808-38358842)
chr3 (119-155)||(18386792-18386828)
chr3 (121-153)||(28391447-28391479)
chr3 (113-153)||(28761175-28761215)
chr3 (108-152)||(47415873-47415917)
chr3 (119-171)||(51924304-51924356)
[»] chr7 (23 HSPs)
chr7 (55-174)||(20561271-20561388)
chr7 (74-172)||(2998488-2998585)
chr7 (56-146)||(6099696-6099783)
chr7 (120-169)||(6099787-6099836)
chr7 (108-151)||(32675735-32675778)
chr7 (97-173)||(5357469-5357541)
chr7 (81-153)||(35365061-35365131)
chr7 (110-151)||(45279967-45280008)
chr7 (124-168)||(20055800-20055844)
chr7 (121-153)||(46759490-46759522)
chr7 (113-148)||(22702614-22702649)
chr7 (87-149)||(29549325-29549385)
chr7 (67-153)||(34407429-34407512)
chr7 (121-176)||(47635405-47635460)
chr7 (119-153)||(38321428-38321462)
chr7 (108-157)||(489132-489181)
chr7 (81-153)||(11485713-11485783)
chr7 (108-153)||(47081454-47081499)
chr7 (55-108)||(47356502-47356555)
chr7 (121-153)||(4550470-4550502)
chr7 (121-153)||(15647010-15647042)
chr7 (108-172)||(27362977-27363041)
chr7 (109-153)||(47118234-47118278)
[»] chr1 (24 HSPs)
chr1 (55-176)||(7614038-7614156)
chr1 (55-147)||(11463939-11464028)
chr1 (64-109)||(10428211-10428256)
chr1 (91-155)||(40368141-40368203)
chr1 (55-127)||(52675375-52675446)
chr1 (91-153)||(4353612-4353672)
chr1 (124-171)||(42561533-42561580)
chr1 (67-136)||(11462838-11462905)
chr1 (61-126)||(24612443-24612506)
chr1 (56-165)||(40702714-40702820)
chr1 (91-130)||(5812000-5812039)
chr1 (108-171)||(21968020-21968083)
chr1 (110-152)||(42560859-42560901)
chr1 (55-109)||(52447492-52447546)
chr1 (119-152)||(16418051-16418084)
chr1 (119-172)||(18314166-18314219)
chr1 (81-148)||(8050209-8050274)
chr1 (121-153)||(9306395-9306427)
chr1 (121-169)||(10390509-10390557)
chr1 (10-66)||(10428295-10428350)
chr1 (125-153)||(21334906-21334934)
chr1 (121-153)||(37705712-37705744)
chr1 (119-172)||(46691371-46691426)
chr1 (113-169)||(52447619-52447675)
[»] chr6 (13 HSPs)
chr6 (80-167)||(13502725-13502810)
chr6 (76-176)||(8479061-8479160)
chr6 (110-172)||(19145168-19145230)
chr6 (110-172)||(19145404-19145466)
chr6 (91-171)||(4118993-4119078)
chr6 (108-153)||(12169752-12169797)
chr6 (124-153)||(21254356-21254385)
chr6 (115-152)||(30566980-30567017)
chr6 (108-152)||(4577912-4577956)
chr6 (121-153)||(6001303-6001335)
chr6 (121-153)||(6875003-6875035)
chr6 (121-153)||(31203915-31203947)
chr6 (121-153)||(34209938-34209970)
[»] chr5 (21 HSPs)
chr5 (82-172)||(16273018-16273106)
chr5 (55-164)||(19840401-19840511)
chr5 (55-153)||(14931003-14931100)
chr5 (109-152)||(39938049-39938092)
chr5 (55-136)||(8515536-8515615)
chr5 (80-153)||(14725389-14725460)
chr5 (92-171)||(13877157-13877233)
chr5 (87-172)||(964224-964307)
chr5 (110-151)||(42422380-42422421)
chr5 (92-170)||(13873265-13873340)
chr5 (113-148)||(32008176-32008211)
chr5 (110-172)||(3955728-3955790)
chr5 (116-173)||(5025289-5025345)
chr5 (124-153)||(35402690-35402719)
chr5 (121-153)||(248754-248786)
chr5 (116-176)||(4352941-4353001)
chr5 (119-167)||(14930877-14930925)
chr5 (113-149)||(16995601-16995637)
chr5 (81-172)||(25537088-25537177)
chr5 (121-153)||(25782690-25782722)
chr5 (113-153)||(27021301-27021341)
[»] chr4 (25 HSPs)
chr4 (57-176)||(36584026-36584141)
chr4 (108-173)||(36196598-36196663)
chr4 (87-171)||(18498970-18499055)
chr4 (55-142)||(49492901-49492986)
chr4 (91-156)||(21038615-21038677)
chr4 (55-113)||(25407237-25407294)
chr4 (91-168)||(36196031-36196106)
chr4 (67-136)||(33144081-33144150)
chr4 (55-130)||(25909756-25909829)
chr4 (108-147)||(28703936-28703975)
chr4 (90-171)||(51747649-51747729)
chr4 (119-173)||(25921132-25921186)
chr4 (109-151)||(48458566-48458608)
chr4 (55-109)||(49492787-49492841)
chr4 (87-167)||(50079690-50079769)
chr4 (67-153)||(54183589-54183674)
chr4 (119-176)||(31106418-31106475)
chr4 (97-153)||(32639820-32639874)
chr4 (121-153)||(594445-594477)
chr4 (121-153)||(627988-628020)
chr4 (121-153)||(12214445-12214477)
chr4 (120-172)||(13273180-13273232)
chr4 (121-153)||(21053980-21054012)
chr4 (121-153)||(39670319-39670351)
chr4 (121-153)||(47045043-47045075)
[»] scaffold1379 (1 HSPs)
scaffold1379 (121-153)||(1541-1573)


Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 10 - 288
Target Start/End: Complemental strand, 19317782 - 19317508
Alignment:
Q  10 attattctagttatactcataaataaatttgccttttaagaatgctatattgttggtaaaagataaacatagtttgatactatttaaaagtcacaaacat 109  Q
    |||||||||||||||| | ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  19317782 attattctagttatacccgtaaataaattttccttttaagaatgttatattgttggtaaaagataaacatagtttgatacggtttaaaagtcacaaacat 19317683  T
Q  110 atctatacatataattttaatgaaaatcaaaatttcataaaaaacattgcttataatttacacacgtacattagagtagtaaagaaaacgataatgaatt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    ||||||||| |||||||||||||||||||||||    
T  19317682 atctatacatataattttaatgaaaatcaaaatttcataaaaaacattgtttataatttacac----acattagagcagtaaagaaaacgataatgaatt 19317587  T
Q  210 tttgatgaagacgaataatgaagaccatcgtggcctgttgaaatggataaaataagctaaacaaatttgtaaataaaat 288  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  19317586 tttgatgaagaccaataatgaagaccatcgtggcccgttgaaatggataaaataagctaaacaaatttgcaaataaaat 19317508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 67 - 171
Target Start/End: Complemental strand, 37716052 - 37715946
Alignment:
Q  67 aaaagataaacatagtttgatactatttaaaagtcacaaacat--atctatacatataattttaatgaaaatcaaaatttcataaaaaacattgcttata 164  Q
    ||||||||||  ||||||| |||||||||||||||||| ||||  ||||||||||||||||||||| ||| ||||| ||| |||||||| ||||||||||    
T  37716052 aaaagataaatgtagtttgttactatttaaaagtcacatacatctatctatacatataattttaataaaagtcaaatttttataaaaaatattgcttata 37715953  T
Q  165 atttaca 171  Q
    |||||||    
T  37715952 atttaca 37715946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 59 - 171
Target Start/End: Original strand, 23914847 - 23914951
Alignment:
Q  59 ttgttggtaaaagataaacatagtttgatactatttaaaagtcacaaacatatctatacatataattttaatgaaaatcaaaatttcataaaaaacattg 158  Q
    ||||||||||||||||||||||||||| ||  |||||||||||||||||  ||||||||| ||||||||      |||||||||||||||||||| ||||    
T  23914847 ttgttggtaaaagataaacatagtttgctataatttaaaagtcacaaac--atctatacaaataatttt------aatcaaaatttcataaaaaatattg 23914938  T
Q  159 cttataatttaca 171  Q
     ||||||||||||    
T  23914939 tttataatttaca 23914951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 66 - 153
Target Start/End: Complemental strand, 41554837 - 41554752
Alignment:
Q  66 taaaagataaacatagtttgatactatttaaaagtcacaaacatatctatacatataattttaatgaaaatcaaaatttcataaaaaa 153  Q
    |||||| |||||||| |||| || ||||||||||||||||||||  | ||||||||||| ||||| ||||||||||||||||| ||||    
T  41554837 taaaagctaaacataatttgttattatttaaaagtcacaaacat--ccatacatataatcttaataaaaatcaaaatttcatacaaaa 41554752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 113 - 169
Target Start/End: Complemental strand, 32217068 - 32217012
Alignment:
Q  113 tatacatataattttaatgaaaatcaaaatttcataaaaaacattgcttataattta 169  Q
    ||||| |||||||||||| |||||||||||| ||||||||| |||| ||||||||||    
T  32217068 tatacttataattttaatcaaaatcaaaattgcataaaaaatattgtttataattta 32217012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 121 - 169
Target Start/End: Complemental strand, 32226363 - 32226315
Alignment:
Q  121 taattttaatgaaaatcaaaatttcataaaaaacattgcttataattta 169  Q
    |||||||||| |||||||||||| ||||||||| |||||||||||||||    
T  32226363 taattttaatcaaaatcaaaattgcataaaaaatattgcttataattta 32226315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 167
Target Start/End: Original strand, 32908795 - 32908863
Alignment:
Q  97 aagtcacaaacatatctatacatataattttaatgaaaatcaaaatttcataaaaaacattgcttataatt 167  Q
    |||||||||||||  ||||||||||||||||||| ||| || ||||||||||||||| |||  ||||||||    
T  32908795 aagtcacaaacat--ctatacatataattttaatcaaattctaaatttcataaaaaatattatttataatt 32908863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 62 - 150
Target Start/End: Complemental strand, 9740600 - 9740514
Alignment:
Q  62 ttggtaaaagataaacatagtttgatactatttaaaagtcacaaacatatctatacatataattttaatgaaaatcaaaatttcataaa 150  Q
    |||||||| | ||||||||||||  |||| ||||||||||||| |  | | |||||||||||||||||| |||| |||||||| |||||    
T  9740600 ttggtaaaggttaaacatagttttctactttttaaaagtcacaga--tgtttatacatataattttaataaaaaccaaaattttataaa 9740514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 97 - 149
Target Start/End: Complemental strand, 32630661 - 32630611
Alignment:
Q  97 aagtcacaaacatatctatacatataattttaatgaaaatcaaaatttcataa 149  Q
    |||||||||||||  ||||||||||||||||||| |||||| |||||||||||    
T  32630661 aagtcacaaacat--ctatacatataattttaatcaaaatctaaatttcataa 32630611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 155
Target Start/End: Original strand, 18372066 - 18372139
Alignment:
Q  80 agtttgatactatttaaaagtcacaaacatatctatacatataattttaatgaaaatcaaaatttcataaaaaaca 155  Q
    |||||||||| ||| |||| |||||||||||  ||||||| || ||||||| |||| ||||||||| |||||||||    
T  18372066 agtttgatacaattgaaaaatcacaaacata--tatacatgtacttttaatcaaaaccaaaatttcttaaaaaaca 18372139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 152
Target Start/End: Complemental strand, 36845046 - 36845002
Alignment:
Q  108 atatctatacatataattttaatgaaaatcaaaatttcataaaaa 152  Q
    |||| |||||||||||||||||| |||||| ||||||||||||||    
T  36845046 atatttatacatataattttaattaaaatccaaatttcataaaaa 36845002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 91 - 153
Target Start/End: Original strand, 27058703 - 27058763
Alignment:
Q  91 atttaaaagtcacaaacatatctatacatataattttaatgaaaatcaaaatttcataaaaaa 153  Q
    |||| |||||||||||  ||| |||||||||||||||||| |||||  |||||||||||||||    
T  27058703 atttgaaagtcacaaa--tatgtatacatataattttaatcaaaattgaaatttcataaaaaa 27058763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 173
Target Start/End: Complemental strand, 40324289 - 40324235
Alignment:
Q  119 tataattttaatgaaaatcaaaatttcataaaaaacattgcttataatttacaca 173  Q
    |||||||||||| ||||||||||||||||| |||| | || | ||||||||||||    
T  40324289 tataattttaatcaaaatcaaaatttcatataaaatactgttcataatttacaca 40324235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 154
Target Start/End: Original strand, 15508751 - 15508784
Alignment:
Q  121 taattttaatgaaaatcaaaatttcataaaaaac 154  Q
    |||||||||| |||||||||||||||||||||||    
T  15508751 taattttaatcaaaatcaaaatttcataaaaaac 15508784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 153
Target Start/End: Original strand, 42949928 - 42949957
Alignment:
Q  124 ttttaatgaaaatcaaaatttcataaaaaa 153  Q
    ||||||||||||||||||||||||||||||    
T  42949928 ttttaatgaaaatcaaaatttcataaaaaa 42949957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 6675015 - 6675063
Alignment:
Q  61 gttggtaaaagataaacatagtttgatactatttaaaagtcacaaacat 109  Q
    ||||||||||||||||||| ||||| ||| |||||||| |||| |||||    
T  6675015 gttggtaaaagataaacatggtttgttacaatttaaaaatcacgaacat 6675063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 173
Target Start/End: Original strand, 19134022 - 19134074
Alignment:
Q  121 taattttaatgaaaatcaaaatttcataaaaaacattgcttataatttacaca 173  Q
    |||||||||| ||||||||||||||||| |||| || | | ||||||||||||    
T  19134022 taattttaataaaaatcaaaatttcatataaaaaatcgttcataatttacaca 19134074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 136
Target Start/End: Complemental strand, 21392095 - 21392019
Alignment:
Q  55 tatattgttggtaaaagataaacatagtttgatactatttaaaagtcacaaacatatctatacatataattttaatgaaaat 136  Q
    ||||||||| |||||| |||| ||||||||| ||   ||||||| ||||||||||  ||||||| ||||||||||| |||||    
T  21392095 tatattgttagtaaaatataagcatagtttgtta---tttaaaattcacaaacat--ctatacaaataattttaatcaaaat 21392019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 152
Target Start/End: Complemental strand, 39822516 - 39822484
Alignment:
Q  120 ataattttaatgaaaatcaaaatttcataaaaa 152  Q
    ||||||||||| |||||||||||||||||||||    
T  39822516 ataattttaatcaaaatcaaaatttcataaaaa 39822484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 153
Target Start/End: Original strand, 42651929 - 42651961
Alignment:
Q  121 taattttaatgaaaatcaaaatttcataaaaaa 153  Q
    |||||||||| ||||||||||||||||||||||    
T  42651929 taattttaatcaaaatcaaaatttcataaaaaa 42651961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 6e-37; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 63 - 176
Target Start/End: Complemental strand, 18887397 - 18887286
Alignment:
Q  63 tggtaaaagataaacatagtttgatactatttaaaagtcacaaacatatctatacatataattttaatgaaaatcaaaatttcataaaaaacattgctta 162  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||||||||| |||| |||    
T  18887397 tggtaaaagataaatatagtttgttactatttaaaagtcacaaacat--ctatacatataattttaatcaaaatcaaaatttcataaaaaaaattgttta 18887300  T
Q  163 taatttacacacgt 176  Q
     |||||||||||||    
T  18887299 aaatttacacacgt 18887286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 57 - 171
Target Start/End: Original strand, 14988226 - 14988342
Alignment:
Q  57 tattgttggtaaaagataaacatagttt-gatactatttaaaagtcacaaacatatctatacatataattttaatgaaaatcaaaatttcat---aaaaa 152  Q
    |||| ||||| ||||||||||||||||| | ||||||||| |||||||||||||  ||||| ||||||||||||| ||||||||||||| ||   |||||    
T  14988226 tattattggttaaagataaacatagttttgttactatttataagtcacaaacat--ctatatatataattttaatcaaaatcaaaattttataaaaaaaa 14988323  T
Q  153 acattgcttataatttaca 171  Q
    |||||| ||||||||||||    
T  14988324 acattgtttataatttaca 14988342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 142
Target Start/End: Original strand, 14987805 - 14987888
Alignment:
Q  55 tatattgttggtaaaagataaacatagtttgatactatttaaaagtcacaaacatatctatacatataattttaatgaaaatcaaaat 142  Q
    |||||| ||||||||||||||| ||| |||| || |||||||||||||||||||||| | ||    |||||||||| |||||||||||    
T  14987805 tatattattggtaaaagataaatatattttgttattatttaaaagtcacaaacatatatcta----taattttaatcaaaatcaaaat 14987888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 135
Target Start/End: Complemental strand, 13206127 - 13206050
Alignment:
Q  55 tatattgttggtaaaagataaacatagtttgatactatttaaaagtcacaaacatatctatacatataattttaatgaaaa 135  Q
    |||||| || |||||| |||||||| ||| | |||||||||||||||||||||  ||||||||||||||||||||| ||||    
T  13206127 tatattatttgtaaaaaataaacatggtt-gttactatttaaaagtcacaaac--atctatacatataattttaatcaaaa 13206050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 172
Target Start/End: Original strand, 29005664 - 29005725
Alignment:
Q  110 atctatacatataattttaatgaaaatcaaaatttcataaaaaacattgcttataatttacac 172  Q
    |||||||||||||||||||||  ||||| ||||||||||||||| |||  |||||||||||||    
T  29005664 atctatacatataattttaatcgaaatctaaatttcataaaaaa-attatttataatttacac 29005725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 64
Target Start/End: Complemental strand, 40155109 - 40155056
Alignment:
Q  10 attattctagttatactcataaataaatttgccttttaagaatgctatattgttg 64  Q
    |||||||||||||||| | |||||||||||| ||||||| |||||||||||||||    
T  40155109 attattctagttatacccttaaataaatttg-cttttaaaaatgctatattgttg 40155056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 97 - 151
Target Start/End: Original strand, 2292990 - 2293042
Alignment:
Q  97 aagtcacaaacatatctatacatataattttaatgaaaatcaaaatttcataaaa 151  Q
    ||||||||||||| |  ||||||||||||||||| |||||| |||||||||||||    
T  2292990 aagtcacaaacattt--atacatataattttaatcaaaatctaaatttcataaaa 2293042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 105 - 152
Target Start/End: Complemental strand, 6235416 - 6235369
Alignment:
Q  105 aacatatctatacatataattttaatgaaaatcaaaatttcataaaaa 152  Q
    ||||||||||||  |||||||||||| ||||||||||||| |||||||    
T  6235416 aacatatctatatctataattttaatcaaaatcaaaattttataaaaa 6235369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 112 - 151
Target Start/End: Complemental strand, 15147727 - 15147688
Alignment:
Q  112 ctatacatataattttaatgaaaatcaaaatttcataaaa 151  Q
    |||||| |||||||||||| ||||||||||||||||||||    
T  15147727 ctatacttataattttaatcaaaatcaaaatttcataaaa 15147688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 173
Target Start/End: Complemental strand, 14031673 - 14031619
Alignment:
Q  119 tataattttaatgaaaatcaaaatttcataaaaaacattgcttataatttacaca 173  Q
    |||||||||||| ||||||||||||||||| |||| | || | ||||||||||||    
T  14031673 tataattttaatcaaaatcaaaatttcatataaaatactgttcataatttacaca 14031619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 153
Target Start/End: Original strand, 14190605 - 14190639
Alignment:
Q  119 tataattttaatgaaaatcaaaatttcataaaaaa 153  Q
    ||||||||||||||||||||| |||||||||||||    
T  14190605 tataattttaatgaaaatcaagatttcataaaaaa 14190639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 153
Target Start/End: Original strand, 444552 - 444584
Alignment:
Q  121 taattttaatgaaaatcaaaatttcataaaaaa 153  Q
    |||||||||| ||||||||||||||||||||||    
T  444552 taattttaatcaaaatcaaaatttcataaaaaa 444584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 148
Target Start/End: Complemental strand, 5934679 - 5934639
Alignment:
Q  108 atatctatacatataattttaatgaaaatcaaaatttcata 148  Q
    |||| ||||| |||||||||||| |||||||||||||||||    
T  5934679 atatttatacttataattttaatcaaaatcaaaatttcata 5934639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 168
Target Start/End: Complemental strand, 11929531 - 11929495
Alignment:
Q  132 aaaatcaaaatttcataaaaaacattgcttataattt 168  Q
    ||||||||||||||||||||||||| | |||||||||    
T  11929531 aaaatcaaaatttcataaaaaacatcgtttataattt 11929495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 153
Target Start/End: Original strand, 13805700 - 13805732
Alignment:
Q  121 taattttaatgaaaatcaaaatttcataaaaaa 153  Q
    |||||||||| ||||||||||||||||||||||    
T  13805700 taattttaataaaaatcaaaatttcataaaaaa 13805732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 14902145 - 14902093
Alignment:
Q  55 tatattgttggtaaaagataaacatagtttgatactatttaaaagtcacaaac 107  Q
    |||||| | ||||||||||| | |||||||| | |||||||||||||||||||    
T  14902145 tatattatcggtaaaagatacatatagtttgttgctatttaaaagtcacaaac 14902093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 153
Target Start/End: Original strand, 15898926 - 15898958
Alignment:
Q  121 taattttaatgaaaatcaaaatttcataaaaaa 153  Q
    |||||||||| ||||||||||||||||||||||    
T  15898926 taattttaatcaaaatcaaaatttcataaaaaa 15898958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 152
Target Start/End: Complemental strand, 29283874 - 29283842
Alignment:
Q  120 ataattttaatgaaaatcaaaatttcataaaaa 152  Q
    ||||||||||| |||||||||||||||||||||    
T  29283874 ataattttaatcaaaatcaaaatttcataaaaa 29283842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 153
Target Start/End: Original strand, 45440817 - 45440849
Alignment:
Q  121 taattttaatgaaaatcaaaatttcataaaaaa 153  Q
    |||||||||| ||||||||||||||||||||||    
T  45440817 taattttaatcaaaatcaaaatttcataaaaaa 45440849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 55 - 153
Target Start/End: Complemental strand, 35258882 - 35258786
Alignment:
Q  55 tatattgttggtaaaagataaacatagtttgatactatttaaaagtcacaaacatatctatacatataattttaatgaaaatcaaaatttcataaaaaa 153  Q
    |||||| ||||||| |||||||| ||||||| |||||||||||||||||||||||  ||||||||||||||||||| ||||||||||||||||||||||    
T  35258882 tatattattggtaacagataaacttagtttgttactatttaaaagtcacaaacat--ctatacatataattttaataaaaatcaaaatttcataaaaaa 35258786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 55 - 162
Target Start/End: Complemental strand, 36640552 - 36640446
Alignment:
Q  55 tatattgttggtaaaa-gataaacatagtttgatactatttaaaagtcacaaacatatctatacatataattttaatgaaaatcaaaatttcataaaaaa 153  Q
    |||||| ||||||||| ||||||||| ||||| ||||||||||||||||| ||||| |  || |||||||||||||| ||||||||||||||||||||||    
T  36640552 tatattattggtaaaaagataaacatggtttgctactatttaaaagtcacgaacattt--atgcatataattttaatcaaaatcaaaatttcataaaaaa 36640455  T
Q  154 cattgctta 162  Q
     ||||||||    
T  36640454 aattgctta 36640446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 55 - 153
Target Start/End: Original strand, 42839992 - 42840088
Alignment:
Q  55 tatattgttggtaaaagataaacatagtttgatactatttaaaagtcacaaacatatctatacatataattttaatgaaaatcaaaatttcataaaaaa 153  Q
    |||||||||||||||| |||| ||||||||| |||||||||||||||||||||  || || ||||||||||||||| |||| |||||||  ||||||||    
T  42839992 tatattgttggtaaaatataagcatagtttgttactatttaaaagtcacaaac--atttaaacatataattttaattaaaaacaaaattctataaaaaa 42840088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 55 - 153
Target Start/End: Original strand, 42522015 - 42522110
Alignment:
Q  55 tatattgttggtaaaag-ataaacatagtttgatactatttaaaagtcacaaacatatctatacatataattttaatgaaaatcaaaatttcataaaaaa 153  Q
    ||||||||| ||||||  |||||||||||||| |||||||||||||| |||||  ||||||  |||||||||||||| ||||||||||||||||| ||||    
T  42522015 tatattgttagtaaaaatataaacatagtttgttactatttaaaagtaacaaa--tatcta--catataattttaataaaaatcaaaatttcatataaaa 42522110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 55 - 153
Target Start/End: Original strand, 36637221 - 36637317
Alignment:
Q  55 tatattgttggtaaaagataaacatagtttgatactatttaaaagtcacaaacatatctatacatataattttaatgaaaatcaaaatttcataaaaaa 153  Q
    |||||| ||||||||||||||||||||||||||| |||||||||||||  |||  || ||| || ||||| ||||| || |||||||||||| ||||||    
T  36637221 tatattattggtaaaagataaacatagtttgatagtatttaaaagtcatcaac--atttattcaaataatgttaatcaacatcaaaatttcacaaaaaa 36637317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 55 - 105
Target Start/End: Original strand, 44941065 - 44941115
Alignment:
Q  55 tatattgttggtaaaagataaacatagtttgatactatttaaaagtcacaa 105  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  44941065 tatattgttggtaaaggataaacatagtttgttactatttaaaagtcacaa 44941115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 111
Target Start/End: Original strand, 44941399 - 44941455
Alignment:
Q  55 tatattgttggtaaaagataaacatagtttgatactatttaaaagtcacaaacatat 111  Q
    |||||| ||||||||| |||| |||| |||| || ||||||||||||||||||||||    
T  44941399 tatattattggtaaaatataagcataatttgttagtatttaaaagtcacaaacatat 44941455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 173
Target Start/End: Original strand, 3806817 - 3806871
Alignment:
Q  119 tataattttaatgaaaatcaaaatttcataaaaaacattgcttataatttacaca 173  Q
    |||||||||||| ||||||||||||||||| |||| || | | ||||||||||||    
T  3806817 tataattttaatcaaaatcaaaatttcatataaaatatcgttcataatttacaca 3806871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 153
Target Start/End: Original strand, 38358808 - 38358842
Alignment:
Q  119 tataattttaatgaaaatcaaaatttcataaaaaa 153  Q
    |||||||||||| ||||||||||||||||||||||    
T  38358808 tataattttaatcaaaatcaaaatttcataaaaaa 38358842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 155
Target Start/End: Complemental strand, 18386828 - 18386792
Alignment:
Q  119 tataattttaatgaaaatcaaaatttcataaaaaaca 155  Q
    |||| ||||||| ||||||||||||||||||||||||    
T  18386828 tatatttttaattaaaatcaaaatttcataaaaaaca 18386792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 153
Target Start/End: Original strand, 28391447 - 28391479
Alignment:
Q  121 taattttaatgaaaatcaaaatttcataaaaaa 153  Q
    |||||||||| ||||||||||||||||||||||    
T  28391447 taattttaatcaaaatcaaaatttcataaaaaa 28391479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 153
Target Start/End: Original strand, 28761175 - 28761215
Alignment:
Q  113 tatacatataattttaatgaaaatcaaaatttcataaaaaa 153  Q
    ||||||||| ||||| || ||||||||||||||||||||||    
T  28761175 tatacatatgatttttatcaaaatcaaaatttcataaaaaa 28761215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 152
Target Start/End: Complemental strand, 47415917 - 47415873
Alignment:
Q  108 atatctatacatataattttaatgaaaatcaaaatttcataaaaa 152  Q
    |||||||||  |||||||||||| ||||| |||||||||||||||    
T  47415917 atatctatatctataattttaatcaaaattaaaatttcataaaaa 47415873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 171
Target Start/End: Complemental strand, 51924356 - 51924304
Alignment:
Q  119 tataattttaatgaaaatcaaaatttcataaaaaacattgcttataatttaca 171  Q
    |||||||||||| ||||||||||||||||| || | |||| | ||||||||||    
T  51924356 tataattttaatcaaaatcaaaatttcatataacatattgttcataatttaca 51924304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 55 - 174
Target Start/End: Original strand, 20561271 - 20561388
Alignment:
Q  55 tatattgttggtaaaagataaacatagtttgatactatttaaaagtcacaaacatatctatacatataattttaatgaaaatcaaaatttcataaaaaac 154  Q
    |||||| ||||||||||||||||||| |||| |||  ||||||||||||||   |||||||||||||||||||||||||||||||||||| || ||||||    
T  20561271 tatattattggtaaaagataaacatattttgttacagtttaaaagtcacaag--tatctatacatataattttaatgaaaatcaaaattttattaaaaac 20561368  T
Q  155 attgcttataatttacacac 174  Q
    |||||  |||| ||||||||    
T  20561369 attgccaataaattacacac 20561388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 74 - 172
Target Start/End: Original strand, 2998488 - 2998585
Alignment:
Q  74 aaacatagtttgatactatttaaaagtcacaaacatatctatacatataattttaatgaaaatcaaaatttcat--aaaaaacattgcttataatttaca 171  Q
    |||||||||||| ||||||||||||||||||||||||  |||||||||||||||||| |||||| ||| |||||  |||||| |||| ||||||||||||    
T  2998488 aaacatagtttgttactatttaaaagtcacaaacata--tatacatataattttaataaaaatc-aaagttcataaaaaaaatattgtttataatttaca 2998584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 56 - 146
Target Start/End: Original strand, 6099696 - 6099783
Alignment:
Q  56 atattgttggtaaaagataaacatagtttgatactatttaaaagtcacaaacatatctatacatataattttaatgaaaatcaaaatttca 146  Q
    ||||| ||| ||||||||||| |||||||| ||||||||||| ||||||||||| |  ||||||||||||||||| |||| ||||||||||    
T  6099696 atattattgataaaagataaa-atagtttgttactatttaaatgtcacaaacattt--atacatataattttaataaaaaacaaaatttca 6099783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 169
Target Start/End: Original strand, 6099787 - 6099836
Alignment:
Q  120 ataattttaatgaaaatcaaaatttcataaaaaacattgcttataattta 169  Q
    ||||||||||| ||||  ||||||||||||||||||||||||||||||||    
T  6099787 ataattttaatcaaaaagaaaatttcataaaaaacattgcttataattta 6099836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 151
Target Start/End: Original strand, 32675735 - 32675778
Alignment:
Q  108 atatctatacatataattttaatgaaaatcaaaatttcataaaa 151  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||    
T  32675735 atatctatacatataattttaatcaaaatcaaaattttataaaa 32675778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 173
Target Start/End: Original strand, 5357469 - 5357541
Alignment:
Q  97 aagtcacaaacatatctatacatataattttaatgaaaatcaaaatttcataaaaaacattgcttataatttacaca 173  Q
    |||||||||||||  |||||||||||||| |||| |||||| ||||||||||||||  |||  ||||||||||||||    
T  5357469 aagtcacaaacat--ctatacatataattctaatcaaaatctaaatttcataaaaa--attatttataatttacaca 5357541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 81 - 153
Target Start/End: Original strand, 35365061 - 35365131
Alignment:
Q  81 gtttgatactatttaaaagtcacaaacatatctatacatataattttaatgaaaatcaaaatttcataaaaaa 153  Q
    ||||| ||| ||||||||||||||||  ||| | ||| |||||||||||| ||||||||||||||||| ||||    
T  35365061 gtttgttacaatttaaaagtcacaaa--tatttgtacttataattttaatcaaaatcaaaatttcatataaaa 35365131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 151
Target Start/End: Complemental strand, 45280008 - 45279967
Alignment:
Q  110 atctatacatataattttaatgaaaatcaaaatttcataaaa 151  Q
    ||||||||||||| ||||||| ||||||||||||||||||||    
T  45280008 atctatacatatacttttaatcaaaatcaaaatttcataaaa 45279967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 168
Target Start/End: Original strand, 20055800 - 20055844
Alignment:
Q  124 ttttaatgaaaatcaaaatttcataaaaaacattgcttataattt 168  Q
    ||||||| ||||||||||||||||||||||||||| | |||||||    
T  20055800 ttttaattaaaatcaaaatttcataaaaaacattgttcataattt 20055844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 153
Target Start/End: Complemental strand, 46759522 - 46759490
Alignment:
Q  121 taattttaatgaaaatcaaaatttcataaaaaa 153  Q
    |||||||||||||||||||||||||||||||||    
T  46759522 taattttaatgaaaatcaaaatttcataaaaaa 46759490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 113 - 148
Target Start/End: Original strand, 22702614 - 22702649
Alignment:
Q  113 tatacatataattttaatgaaaatcaaaatttcata 148  Q
    |||||||||||||||||| |||||||||||||||||    
T  22702614 tatacatataattttaataaaaatcaaaatttcata 22702649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 87 - 149
Target Start/End: Complemental strand, 29549385 - 29549325
Alignment:
Q  87 tactatttaaaagtcacaaacatatctatacatataattttaatgaaaatcaaaatttcataa 149  Q
    ||||||||||| |||||||||||  |||| |||||||||||||  |||| |||||||||||||    
T  29549385 tactatttaaaggtcacaaacat--ctatgcatataattttaaataaaaacaaaatttcataa 29549325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 67 - 153
Target Start/End: Original strand, 34407429 - 34407512
Alignment:
Q  67 aaaagataaacatagtttgatactatttaaaagtcacaaacatatctatacatataattttaatgaaaatcaaaatttcataaaaaa 153  Q
    ||||||||||||||||||| ||| ||||||||| ||||| |  |||  |||||| ||||||||| ||||||||||||  ||||||||    
T  34407429 aaaagataaacatagtttgttaccatttaaaagccacaagc--atcattacata-aattttaatcaaaatcaaaattctataaaaaa 34407512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 121 - 176
Target Start/End: Complemental strand, 47635460 - 47635405
Alignment:
Q  121 taattttaatgaaaatcaaaatttcataaaaaacattgcttataatttacacacgt 176  Q
    ||||||||||||||||| ||| | ||||||||| ||||  ||||||||||||||||    
T  47635460 taattttaatgaaaatctaaaatccataaaaaaaattgtatataatttacacacgt 47635405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 153
Target Start/End: Original strand, 38321428 - 38321462
Alignment:
Q  119 tataattttaatgaaaatcaaaatttcataaaaaa 153  Q
    |||||||||||| ||||||||||||||||||||||    
T  38321428 tataattttaataaaaatcaaaatttcataaaaaa 38321462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 157
Target Start/End: Original strand, 489132 - 489181
Alignment:
Q  108 atatctatacatataattttaatgaaaatcaaaatttcataaaaaacatt 157  Q
    |||| |||||||||||||| ||| ||||||||||  ||||||||||||||    
T  489132 atatatatacatataatttaaattaaaatcaaaacatcataaaaaacatt 489181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 153
Target Start/End: Original strand, 11485713 - 11485783
Alignment:
Q  81 gtttgatactatttaaaagtcacaaacatatctatacatataattttaatgaaaatcaaaatttcataaaaaa 153  Q
    ||||| ||| ||||||||||||||||  ||| | |||  ||||||||||| ||||||||||||||||| ||||    
T  11485713 gtttgttacaatttaaaagtcacaaa--tatttgtacccataattttaattaaaatcaaaatttcatataaaa 11485783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 153
Target Start/End: Original strand, 47081454 - 47081499
Alignment:
Q  108 atatctatacatataattttaatgaaaatcaaaatttcataaaaaa 153  Q
    |||| |||| ||||||||||||| ||||| ||||||||||||||||    
T  47081454 atatatatatatataattttaatcaaaattaaaatttcataaaaaa 47081499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 108
Target Start/End: Original strand, 47356502 - 47356555
Alignment:
Q  55 tatattgttggtaaaagataaacatagtttgatactatttaaaagtcacaaaca 108  Q
    |||||||||||||||| || || ||| |||| || |||||||||||||||||||    
T  47356502 tatattgttggtaaaatattaatataatttgttagtatttaaaagtcacaaaca 47356555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 153
Target Start/End: Original strand, 4550470 - 4550502
Alignment:
Q  121 taattttaatgaaaatcaaaatttcataaaaaa 153  Q
    ||||||||||||||||||||||||| |||||||    
T  4550470 taattttaatgaaaatcaaaatttcttaaaaaa 4550502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 153
Target Start/End: Complemental strand, 15647042 - 15647010
Alignment:
Q  121 taattttaatgaaaatcaaaatttcataaaaaa 153  Q
    |||||||||| ||||||||||||||||||||||    
T  15647042 taattttaatcaaaatcaaaatttcataaaaaa 15647010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 172
Target Start/End: Original strand, 27362977 - 27363041
Alignment:
Q  108 atatctatacatataattttaatgaaaatcaaaatttcataaaaaacattgcttataatttacac 172  Q
    |||||||||| ||| |||||||| ||||||||||||| ||  ||||||  | |||||||||||||    
T  27362977 atatctatacttatgattttaatcaaaatcaaaattttatgtaaaacaccgtttataatttacac 27363041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 47118278 - 47118234
Alignment:
Q  109 tatctatacatataattttaatgaaaatcaaaatttcataaaaaa 153  Q
    ||||||||| |||| ||| ||| ||||||||||||||||||||||    
T  47118278 tatctatacttatactttgaatcaaaatcaaaatttcataaaaaa 47118234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 55 - 176
Target Start/End: Complemental strand, 7614156 - 7614038
Alignment:
Q  55 tatattgttggtaaaagataaacatagtttgatactatttaaaagtcacaaacatatctatacatataattttaatgaaaatcaaaatttcataaaaaac 154  Q
    |||||| ||||||||| ||| |||||||||| |||||||||||| || || ||  ||||| || |||||||||||| ||||| ||||||| |||||||||    
T  7614156 tatatttttggtaaaatatagacatagtttgttactatttaaaaatc-cagac--atctacacttataattttaatcaaaattaaaattttataaaaaac 7614060  T
Q  155 attgcttataatttacacacgt 176  Q
    ||||||| ||||||||||||||    
T  7614059 attgcttgtaatttacacacgt 7614038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 55 - 147
Target Start/End: Original strand, 11463939 - 11464028
Alignment:
Q  55 tatattgttggtaaaagataaacatagtttgatactatttaaaagtcacaaacatatctatacatataattttaatgaaaatcaaaatttcat 147  Q
    |||||| |||||||||| ||||||||||||  |||||||||||||||||||||  || |||| | ||||||||||| ||||| ||||||||||    
T  11463939 tatattattggtaaaagttaaacatagtttt-tactatttaaaagtcacaaac--atttatatagataattttaatcaaaattaaaatttcat 11464028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 109
Target Start/End: Complemental strand, 10428256 - 10428211
Alignment:
Q  64 ggtaaaagataaacatagtttgatactatttaaaagtcacaaacat 109  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||    
T  10428256 ggtaaaagataaacatagtttgttactatttaaaagttacaaacat 10428211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 91 - 155
Target Start/End: Original strand, 40368141 - 40368203
Alignment:
Q  91 atttaaaagtcacaaacatatctatacatataattttaatgaaaatcaaaatttcataaaaaaca 155  Q
    |||| ||||||||||||||  |||||| |||| ||||||| ||||||||||||||||||||||||    
T  40368141 atttgaaagtcacaaacat--ctatacctatacttttaatcaaaatcaaaatttcataaaaaaca 40368203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 55 - 127
Target Start/End: Original strand, 52675375 - 52675446
Alignment:
Q  55 tatattgttggtaaaagataaacatagtttgatactatttaaaagtcacaaacatatctatacatataatttt 127  Q
    |||||||||||||||||| |||||||||||  | |||||||||||||| ||| | || |||||||||||||||    
T  52675375 tatattgttggtaaaagaaaaacatagtttattgctatttaaaagtca-aaaaacatatatacatataatttt 52675446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 91 - 153
Target Start/End: Complemental strand, 4353672 - 4353612
Alignment:
Q  91 atttaaaagtcacaaacatatctatacatataattttaatgaaaatcaaaatttcataaaaaa 153  Q
    |||| |||||||||||  ||| |||||||||||||||||| ||||| ||||||||||||||||    
T  4353672 atttgaaagtcacaaa--tatttatacatataattttaataaaaattaaaatttcataaaaaa 4353612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 124 - 171
Target Start/End: Complemental strand, 42561580 - 42561533
Alignment:
Q  124 ttttaatgaaaatcaaaatttcataaaaaacattgcttataatttaca 171  Q
    ||||||| ||||||||||||||||||||||||||| | ||||||||||    
T  42561580 ttttaatcaaaatcaaaatttcataaaaaacattgttcataatttaca 42561533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 136
Target Start/End: Complemental strand, 11462905 - 11462838
Alignment:
Q  67 aaaagataaacatagtttgatactatttaaaagtcacaaacatatctatacatataattttaatgaaaat 136  Q
    |||||||||||||| |||| |||||||||||| ||||||||   ||||||||| |||||||||| |||||    
T  11462905 aaaagataaacataatttgttactatttaaaaatcacaaac--gtctatacatgtaattttaattaaaat 11462838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 126
Target Start/End: Complemental strand, 24612506 - 24612443
Alignment:
Q  61 gttggtaaaagataaacatagtttgatactatttaaaagtcacaaacatatctatacatataattt 126  Q
    |||||||||||||||| |||||||  || | |||||||||||||||||||  ||||||||||||||    
T  24612506 gttggtaaaagataaagatagttttttattgtttaaaagtcacaaacata--tatacatataattt 24612443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 165
Target Start/End: Original strand, 40702714 - 40702820
Alignment:
Q  56 atattgttggtaaaagataaacatagtttgatactatttaaaagtcacaaacatatctatacatataattttaatgaaaatcaaaatttcataaaaaaca 155  Q
    ||||| ||||||||||||||| || ||||| ||||||||||| ||  ||||  ||| |||||||| || |||||| |||||||| | ||||| ||||| |    
T  40702714 atattattggtaaaagataaatatggtttgttactatttaaacgt--caaaagtatttatacataaaactttaatcaaaatcaagacttcat-aaaaata 40702810  T
Q  156 ttgcttataa 165  Q
    ||||||||||    
T  40702811 ttgcttataa 40702820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 91 - 130
Target Start/End: Complemental strand, 5812039 - 5812000
Alignment:
Q  91 atttaaaagtcacaaacatatctatacatataattttaat 130  Q
    ||||||||||||||||||||||||||| ||||| ||||||    
T  5812039 atttaaaagtcacaaacatatctatacttataagtttaat 5812000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 108 - 171
Target Start/End: Original strand, 21968020 - 21968083
Alignment:
Q  108 atatctatacatataattttaatgaaaatcaaaatttcataaaaaacattgcttataatttaca 171  Q
    |||| ||||| |||||||||||| ||||||||||||||||| |||| |  | ||||||||||||    
T  21968020 atatttatacttataattttaatcaaaatcaaaatttcatataaaatacagtttataatttaca 21968083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 152
Target Start/End: Complemental strand, 42560901 - 42560859
Alignment:
Q  110 atctatacatataattttaatgaaaatcaaaatttcataaaaa 152  Q
    ||||||||||| ||||||||| |||||| ||||||||||||||    
T  42560901 atctatacatacaattttaatcaaaatctaaatttcataaaaa 42560859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 109
Target Start/End: Original strand, 52447492 - 52447546
Alignment:
Q  55 tatattgttggtaaaagataaacatagtttgatactatttaaaagtcacaaacat 109  Q
    |||||||||| |||||||||||||||||||  || | ||||||||||||| ||||    
T  52447492 tatattgttgataaaagataaacatagtttattattgtttaaaagtcacacacat 52447546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 152
Target Start/End: Original strand, 16418051 - 16418084
Alignment:
Q  119 tataattttaatgaaaatcaaaatttcataaaaa 152  Q
    |||||||||||| |||||||||||||||||||||    
T  16418051 tataattttaatcaaaatcaaaatttcataaaaa 16418084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 172
Target Start/End: Original strand, 18314166 - 18314219
Alignment:
Q  119 tataattttaatgaaaatcaaaatttcataaaaaacattgcttataatttacac 172  Q
    |||||||||||| ||||||||||||||||| |||| ||   |||||||||||||    
T  18314166 tataattttaatcaaaatcaaaatttcatacaaaatatcatttataatttacac 18314219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 148
Target Start/End: Complemental strand, 8050274 - 8050209
Alignment:
Q  81 gtttgatactatttaaaagtcacaaacatatctatacatataattttaatgaaaatcaaaatttcata 148  Q
    ||||| ||| |||||||||| |||||  ||| | ||| |||||||||||| |||||||||||||||||    
T  8050274 gtttgttacaatttaaaagttacaaa--tatttgtacttataattttaattaaaatcaaaatttcata 8050209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 153
Target Start/End: Original strand, 9306395 - 9306427
Alignment:
Q  121 taattttaatgaaaatcaaaatttcataaaaaa 153  Q
    |||||||||| ||||||||||||||||||||||    
T  9306395 taattttaatcaaaatcaaaatttcataaaaaa 9306427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 10390509 - 10390557
Alignment:
Q  121 taattttaatgaaaatcaaaatttcataaaaaacattgcttataattta 169  Q
    |||||||||| ||||| ||||||||||||||||  ||| ||||||||||    
T  10390509 taattttaatcaaaattaaaatttcataaaaaaatttgtttataattta 10390557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 10428350 - 10428295
Alignment:
Q  10 attattctagttatactcataaataaatttgccttttaagaatgctatattgttggt 66  Q
    ||||||| |||||||  | |||| |||||||| ||||||||||||||||||||||||    
T  10428350 attattccagttatatccttaaacaaatttgc-ttttaagaatgctatattgttggt 10428295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 153
Target Start/End: Complemental strand, 21334934 - 21334906
Alignment:
Q  125 tttaatgaaaatcaaaatttcataaaaaa 153  Q
    |||||||||||||||||||||||||||||    
T  21334934 tttaatgaaaatcaaaatttcataaaaaa 21334906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 153
Target Start/End: Complemental strand, 37705744 - 37705712
Alignment:
Q  121 taattttaatgaaaatcaaaatttcataaaaaa 153  Q
    |||||||||| ||||||||||||||||||||||    
T  37705744 taattttaatcaaaatcaaaatttcataaaaaa 37705712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 172
Target Start/End: Original strand, 46691371 - 46691426
Alignment:
Q  119 tataattttaatgaaaatcaaaatttcataa--aaaacattgcttataatttacac 172  Q
    |||||| ||||| ||||| ||||||||||||  |||||||| ||||||||||||||    
T  46691371 tataatcttaatcaaaataaaaatttcataaataaaacattacttataatttacac 46691426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 169
Target Start/End: Original strand, 52447619 - 52447675
Alignment:
Q  113 tatacatataattttaatgaaaatcaaaatttcataaaaaacattgcttataattta 169  Q
    ||||||||| |||||||| ||||||||||||| || ||||| | || ||||||||||    
T  52447619 tatacatatcattttaataaaaatcaaaattttattaaaaaaagtgtttataattta 52447675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 80 - 167
Target Start/End: Complemental strand, 13502810 - 13502725
Alignment:
Q  80 agtttgatactatttaaaagtcacaaacatatctatacatataattttaatgaaaatcaaaatttcataaaaaacattgcttataatt 167  Q
    |||||| |||| |||||||||||||||||| |  ||||||||||||||||| |||||||||| ||||||||||| |||||||||||||    
T  13502810 agtttgttactgtttaaaagtcacaaacatgt--atacatataattttaataaaaatcaaaagttcataaaaaagattgcttataatt 13502725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 176
Target Start/End: Original strand, 8479061 - 8479160
Alignment:
Q  76 acatagtttgatactatttaaaagtcacaaacatatctatacatataattttaatgaaaatcaaaatttcataaaaa-acattgcttataatttacacac 174  Q
    |||||||||| ||||| |||||||| | ||| ||||  ||| |||||||||| || ||||||||||||| ||||||| |  |||||||||||| ||||||    
T  8479061 acatagtttgttactaattaaaagttataaatatat--ataaatataattttgatcaaaatcaaaattttataaaaatatgttgcttataattcacacac 8479158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 172
Target Start/End: Complemental strand, 19145230 - 19145168
Alignment:
Q  110 atctatacatataattttaatgaaaatcaaaatttcataaaaaacattgcttataatttacac 172  Q
    |||||| ||||| |||||| | |||||| ||||||||||||||| |||| |||||||||||||    
T  19145230 atctatgcatattattttattcaaaatcgaaatttcataaaaaaaattgtttataatttacac 19145168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 172
Target Start/End: Complemental strand, 19145466 - 19145404
Alignment:
Q  110 atctatacatataattttaatgaaaatcaaaatttcataaaaaacattgcttataatttacac 172  Q
    |||||| ||||| |||||| | |||||| ||||||||||||||| |||| |||||||||||||    
T  19145466 atctatgcatattattttattcaaaatcgaaatttcataaaaaaaattgtttataatttacac 19145404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 171
Target Start/End: Complemental strand, 4119078 - 4118993
Alignment:
Q  91 atttaaaagtcacaaacatatctatacatata-----attttaatgaaaatcaaaatttcataaaaaacattgcttataatttaca 171  Q
    |||| |||||||||||||| | ||||||| ||     |||||||| |||||||||||||||||||||| |  | ||||||||||||    
T  4119078 atttgaaagtcacaaacatttatatacatctacctatattttaatcaaaatcaaaatttcataaaaaataccgtttataatttaca 4118993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 153
Target Start/End: Complemental strand, 12169797 - 12169752
Alignment:
Q  108 atatctatacatataattttaatgaaaatcaaaatttcataaaaaa 153  Q
    |||| |||| ||||| ||||||| ||||||||||||||||||||||    
T  12169797 atatatatatatatagttttaatcaaaatcaaaatttcataaaaaa 12169752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 153
Target Start/End: Complemental strand, 21254385 - 21254356
Alignment:
Q  124 ttttaatgaaaatcaaaatttcataaaaaa 153  Q
    ||||||||||||||||||||||||||||||    
T  21254385 ttttaatgaaaatcaaaatttcataaaaaa 21254356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 152
Target Start/End: Original strand, 30566980 - 30567017
Alignment:
Q  115 tacatataattttaatgaaaatcaaaatttcataaaaa 152  Q
    |||||||||||||||  |||||||||||||||||||||    
T  30566980 tacatataattttaactaaaatcaaaatttcataaaaa 30567017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 152
Target Start/End: Complemental strand, 4577956 - 4577912
Alignment:
Q  108 atatctatacatataattttaatgaaaatcaaaatttcataaaaa 152  Q
    |||||||||  |||||||||||| ||||| |||||||||||||||    
T  4577956 atatctatatctataattttaatcaaaattaaaatttcataaaaa 4577912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 153
Target Start/End: Complemental strand, 6001335 - 6001303
Alignment:
Q  121 taattttaatgaaaatcaaaatttcataaaaaa 153  Q
    |||||||||| ||||||||||||||||||||||    
T  6001335 taattttaattaaaatcaaaatttcataaaaaa 6001303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 153
Target Start/End: Complemental strand, 6875035 - 6875003
Alignment:
Q  121 taattttaatgaaaatcaaaatttcataaaaaa 153  Q
    |||||||||| ||||||||||||||||||||||    
T  6875035 taattttaatcaaaatcaaaatttcataaaaaa 6875003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 153
Target Start/End: Complemental strand, 31203947 - 31203915
Alignment:
Q  121 taattttaatgaaaatcaaaatttcataaaaaa 153  Q
    |||||||||| ||||||||||||||||||||||    
T  31203947 taattttaatcaaaatcaaaatttcataaaaaa 31203915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 153
Target Start/End: Complemental strand, 34209970 - 34209938
Alignment:
Q  121 taattttaatgaaaatcaaaatttcataaaaaa 153  Q
    |||||||||| ||||||||||||||||||||||    
T  34209970 taattttaatcaaaatcaaaatttcataaaaaa 34209938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 7e-21; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 82 - 172
Target Start/End: Complemental strand, 16273106 - 16273018
Alignment:
Q  82 tttgatactatttaaaagtcacaaacatatctatacatataattttaatgaaaatcaaaatttcataaaaaacattgcttataatttacac 172  Q
    |||| ||||| |||||||||| |||  ||||||| |||||||||||||| |||||||||||||||||||| |||||| |||||||||||||    
T  16273106 tttgttactacttaaaagtcaaaaa--tatctatgcatataattttaatcaaaatcaaaatttcataaaagacattgtttataatttacac 16273018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 55 - 164
Target Start/End: Original strand, 19840401 - 19840511
Alignment:
Q  55 tatattgttggtaaaagataaacatagtttgatactatttaaaagtcacaaacatatctatacatataattttaatgaaaat---caaaatttcataaaa 151  Q
    |||||| ||| ||||||||||||||| | || |||||||||||||||||||||  ||||||||||||||||||||| |||||    ||||||||| ||||    
T  19840401 tatattattgataaaagataaacataatctgttactatttaaaagtcacaaac--atctatacatataattttaatcaaaattaaaaaaatttcaaaaaa 19840498  T
Q  152 aacattgcttata 164  Q
    || ||||||||||    
T  19840499 aaaattgcttata 19840511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 55 - 153
Target Start/End: Complemental strand, 14931100 - 14931003
Alignment:
Q  55 tatattgttggtaaaagataaacatagtttgatactatttaaaagtcacaaacatatctatacatataattttaatgaaaatcaaaatttcataaaaaa 153  Q
    |||||| ||| | ||||||||||| | |||| ||||||||||||||||||||||| | | ||| |||||||||||| ||||||||||||| ||||||||    
T  14931100 tatattattgatgaaagataaacaaaatttgttactatttaaaagtcacaaacat-tttgtacgtataattttaatcaaaatcaaaattttataaaaaa 14931003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 109 - 152
Target Start/End: Original strand, 39938049 - 39938092
Alignment:
Q  109 tatctatacatataattttaatgaaaatcaaaatttcataaaaa 152  Q
    |||||||||||||||||||||| |||||||||||||||||||||    
T  39938049 tatctatacatataattttaatcaaaatcaaaatttcataaaaa 39938092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 136
Target Start/End: Complemental strand, 8515615 - 8515536
Alignment:
Q  55 tatattgttggtaaaagataaacatagtttgatactatttaaaagtcacaaacatatctatacatataattttaatgaaaat 136  Q
    |||||||||||||| ||||||  |||||||  |||||||||||||| ||||  |||| |||||||||||||||||| |||||    
T  8515615 tatattgttggtaacagataagtatagttttctactatttaaaagttacaa--atatatatacatataattttaatcaaaat 8515536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 80 - 153
Target Start/End: Original strand, 14725389 - 14725460
Alignment:
Q  80 agtttgatactatttaaaagtcacaaacatatctatacatataattttaatgaaaatcaaaatttcataaaaaa 153  Q
    |||||| ||| |||||||||||||||||||  ||||||||||||||||||  |||||  |||||||||||||||    
T  14725389 agtttgttaccatttaaaagtcacaaacat--ctatacatataattttaaccaaaattcaaatttcataaaaaa 14725460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 92 - 171
Target Start/End: Original strand, 13877157 - 13877233
Alignment:
Q  92 tttaaaagtcacaaacatatctatacatataattttaatgaaaatcaaaatttcataaaaaacattgcttataatttaca 171  Q
    |||||||||||||||  |||||||||||||||| ||||| ||||| ||||||||| |||| ||||||  |||||||||||    
T  13877157 tttaaaagtcacaaa--tatctatacatataatattaatcaaaattaaaatttca-aaaagacattgtctataatttaca 13877233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 172
Target Start/End: Complemental strand, 964307 - 964224
Alignment:
Q  87 tactatttaaaagtcacaaacatatctatacatataattttaatgaaaatcaaaatttcataaaaaacattgcttataatttacac 172  Q
    |||| |||||||||||||||||| |  |||| |||||||||||| ||||  ||||||| |||||| | ||| ||||||||||||||    
T  964307 tactttttaaaagtcacaaacattt--atacctataattttaatcaaaaataaaatttaataaaagatattacttataatttacac 964224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 151
Target Start/End: Original strand, 42422380 - 42422421
Alignment:
Q  110 atctatacatataattttaatgaaaatcaaaatttcataaaa 151  Q
    ||||||||||||||||||||| |||||| |||||||||||||    
T  42422380 atctatacatataattttaatcaaaatctaaatttcataaaa 42422421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 92 - 170
Target Start/End: Original strand, 13873265 - 13873340
Alignment:
Q  92 tttaaaagtcacaaacatatctatacatataattttaatgaaaatcaaaatttcataaaaaacattgcttataatttac 170  Q
    |||||||||| ||||  |||||||||||||||| ||||| ||||| ||||||||| |||| ||||||  ||||||||||    
T  13873265 tttaaaagtcgcaaa--tatctatacatataatattaatcaaaattaaaatttca-aaaagacattgtctataatttac 13873340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 113 - 148
Target Start/End: Original strand, 32008176 - 32008211
Alignment:
Q  113 tatacatataattttaatgaaaatcaaaatttcata 148  Q
    |||||||||||||||||| |||||||||||||||||    
T  32008176 tatacatataattttaatcaaaatcaaaatttcata 32008211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 172
Target Start/End: Complemental strand, 3955790 - 3955728
Alignment:
Q  110 atctatacatataattttaatgaaaatcaaaatttcataaaaaacattgcttataatttacac 172  Q
    ||||||||||||||||||||| |||||  ||||||||||||| | ||   |||||||||||||    
T  3955790 atctatacatataattttaatcaaaatataaatttcataaaataaataaattataatttacac 3955728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 173
Target Start/End: Complemental strand, 5025345 - 5025289
Alignment:
Q  116 acatataattttaatgaaaatcaaaatttcataaaaaacattgcttataatttacaca 173  Q
    ||||||||||| ||| ||||||||||||| |||||||  ||| |||||||||||||||    
T  5025345 acatataatttgaataaaaatcaaaattttataaaaataatt-cttataatttacaca 5025289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 153
Target Start/End: Complemental strand, 35402719 - 35402690
Alignment:
Q  124 ttttaatgaaaatcaaaatttcataaaaaa 153  Q
    ||||||||||||||||||||||||||||||    
T  35402719 ttttaatgaaaatcaaaatttcataaaaaa 35402690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 153
Target Start/End: Original strand, 248754 - 248786
Alignment:
Q  121 taattttaatgaaaatcaaaatttcataaaaaa 153  Q
    |||||||||| ||||||||||||||||||||||    
T  248754 taattttaatcaaaatcaaaatttcataaaaaa 248786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 176
Target Start/End: Complemental strand, 4353001 - 4352941
Alignment:
Q  116 acatataattttaatgaaaatcaaaatttcataaaaaacattgcttataatttacacacgt 176  Q
    ||||||||||||||| ||| |||||||  ||||||| | || | |||||||||||||||||    
T  4353001 acatataattttaatcaaactcaaaatcacataaaagatatagtttataatttacacacgt 4352941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 167
Target Start/End: Original strand, 14930877 - 14930925
Alignment:
Q  119 tataattttaatgaaaatcaaaatttcataaaaaacattgcttataatt 167  Q
    |||| ||||||| ||||| ||||||||||| ||||||||| ||||||||    
T  14930877 tatacttttaatcaaaattaaaatttcatataaaacattgtttataatt 14930925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 149
Target Start/End: Original strand, 16995601 - 16995637
Alignment:
Q  113 tatacatataattttaatgaaaatcaaaatttcataa 149  Q
    ||||| |||||||||||| ||||||||||||||||||    
T  16995601 tatacctataattttaatcaaaatcaaaatttcataa 16995637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 172
Target Start/End: Original strand, 25537088 - 25537177
Alignment:
Q  81 gtttgatactatttaaaagtcacaaacatatctatacatataattttaatgaaaatcaaaatttcataaaaaacattgcttataatttacac 172  Q
    ||||| ||| |||| |||||||||||  ||| | ||| |||||||||||| ||||||||| ||| ||| |||| |||| | |||||||||||    
T  25537088 gtttgttacaatttgaaagtcacaaa--tatttgtacttataattttaatcaaaatcaaatttttatataaaatattgttcataatttacac 25537177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 153
Target Start/End: Original strand, 25782690 - 25782722
Alignment:
Q  121 taattttaatgaaaatcaaaatttcataaaaaa 153  Q
    |||||||||| ||||||||||||||||||||||    
T  25782690 taattttaatcaaaatcaaaatttcataaaaaa 25782722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 153
Target Start/End: Complemental strand, 27021341 - 27021301
Alignment:
Q  113 tatacatataattttaatgaaaatcaaaatttcataaaaaa 153  Q
    ||||| |||||||||||| ||||| ||||||||||||||||    
T  27021341 tatacttataattttaatcaaaataaaaatttcataaaaaa 27021301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 57 - 176
Target Start/End: Original strand, 36584026 - 36584141
Alignment:
Q  57 tattgttggtaaaagataaacatagtttgatactatttaaaagtcacaaacatatctatacatataattttaatgaaaatcaaaatttcataaaaaacat 156  Q
    |||| ||||||||| |||||| || |||| |||||||||||| | ||||||||  |||||||||| |||||||| ||||| ||||||||||| |||| ||    
T  36584026 tattattggtaaaacataaac-taatttgttactatttaaaa-taacaaacat--ctatacatatcattttaatcaaaattaaaatttcatacaaaatat 36584121  T
Q  157 tgcttataatttacacacgt 176  Q
    || |||||||||||||||||    
T  36584122 tgattataatttacacacgt 36584141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 108 - 173
Target Start/End: Original strand, 36196598 - 36196663
Alignment:
Q  108 atatctatacatataattttaatgaaaatcaaaatttcataaaaaacattgcttataatttacaca 173  Q
    |||| |||||||||||||||||| ||||||||||||||||| |||| |||| ||||||||| ||||    
T  36196598 atatttatacatataattttaatcaaaatcaaaatttcatataaaatattgtttataattttcaca 36196663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 87 - 171
Target Start/End: Complemental strand, 18499055 - 18498970
Alignment:
Q  87 tactatttaaaagtcacaaacatatctatacatataattttaatgaaaatcaaaatttcat--aaaaaacattgcttataatttaca 171  Q
    |||||||||||||| | ||| ||||||||| ||||| ||||||| ||||||||||||| ||  ||||||||||| ||||||||||||    
T  18499055 tactatttaaaagtaaaaaa-atatctatatatatagttttaattaaaatcaaaattttataaaaaaaacattgtttataatttaca 18498970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 55 - 142
Target Start/End: Original strand, 49492901 - 49492986
Alignment:
Q  55 tatattgttggtaaaagataaacatagtttgatactatttaaaagtcacaaacatatctatacatataattttaatgaaaatcaaaat 142  Q
    ||||||||| |||||||||||| |||||||  || ||||||||||| ||||||  || ||||||||| |||||||| |||||| ||||    
T  49492901 tatattgtttgtaaaagataaatatagtttattattatttaaaagttacaaac--atgtatacatatgattttaatcaaaatctaaat 49492986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 156
Target Start/End: Original strand, 21038615 - 21038677
Alignment:
Q  91 atttaaaagtcacaaacatatctatacatataattttaatgaaaatcaaaatttcataaaaaacat 156  Q
    |||||||||||||||||||  |||||| || | ||||||| |||||||||||||||||||||||||    
T  21038615 atttaaaagtcacaaacat--ctatacttaca-ttttaatcaaaatcaaaatttcataaaaaacat 21038677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 113
Target Start/End: Complemental strand, 25407294 - 25407237
Alignment:
Q  55 tatattgttggtaaaagataaacatagtttgatactatttaaaagtcacaaacatatct 113  Q
    ||||||||||||||||||||||||||  ||| |||||||||||| | ||||||||||||    
T  25407294 tatattgttggtaaaagataaacataagttgctactatttaaaa-taacaaacatatct 25407237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 168
Target Start/End: Original strand, 36196031 - 36196106
Alignment:
Q  91 atttaaaagtcacaaacatatctatacatataattttaatgaaaatcaaaatttcataaaaaacattgcttataattt 168  Q
    ||||||||||||| |||||  |||| |||| ||||||||| ||||||||||||||  | |||| ||||||||||||||    
T  36196031 atttaaaagtcaccaacat--ctatgcatacaattttaattaaaatcaaaatttcgaataaaatattgcttataattt 36196106  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 136
Target Start/End: Complemental strand, 33144150 - 33144081
Alignment:
Q  67 aaaagataaacatagtttgatactatttaaaagtcacaaacatatctatacatataattttaatgaaaat 136  Q
    |||||||||||||| |||  ||||||||||||||||||| ||| || | ||||||||| ||||| |||||    
T  33144150 aaaagataaacataattttttactatttaaaagtcacaatcatttcaacacatataatcttaatcaaaat 33144081  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 130
Target Start/End: Original strand, 25909756 - 25909829
Alignment:
Q  55 tatattgttggtaaaagataaacatagtttgatactatttaaaagtcacaaacatatctatacatataattttaat 130  Q
    |||||||||| || ||||| ||||||||||| || ||||||||||||| ||||  |||||||  ||||||||||||    
T  25909756 tatattgttgctagaagatgaacatagtttgttattatttaaaagtcataaac--atctatatgtataattttaat 25909829  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 108 - 147
Target Start/End: Complemental strand, 28703975 - 28703936
Alignment:
Q  108 atatctatacatataattttaatgaaaatcaaaatttcat 147  Q
    ||||||||||||||| ||||||| ||||||||||||||||    
T  28703975 atatctatacatatatttttaatcaaaatcaaaatttcat 28703936  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 90 - 171
Target Start/End: Original strand, 51747649 - 51747729
Alignment:
Q  90 tatttaaaagtcacaaacatatctatacatataattttaatgaaaatcaaaatttcat-aaaaaacattgcttataatttaca 171  Q
    ||||||||||||||||||  || |||||||| ||||||||  ||||| ||| ||| || |||||| |||||||||||||||||    
T  51747649 tatttaaaagtcacaaac--atttatacataaaattttaaccaaaataaaatttttataaaaaaatattgcttataatttaca 51747729  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 173
Target Start/End: Original strand, 25921132 - 25921186
Alignment:
Q  119 tataattttaatgaaaatcaaaatttcataaaaaacattgcttataatttacaca 173  Q
    |||||||||||| ||||||||||||||||| |||| || | | ||||||||||||    
T  25921132 tataattttaatcaaaatcaaaatttcatataaaatatcgttcataatttacaca 25921186  T

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Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 151
Target Start/End: Original strand, 48458566 - 48458608
Alignment:
Q  109 tatctatacatataattttaatgaaaatcaaaatttcataaaa 151  Q
    ||||||||| |||||||||||| ||||||||||||| ||||||    
T  48458566 tatctatacctataattttaattaaaatcaaaattttataaaa 48458608  T

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Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 109
Target Start/End: Original strand, 49492787 - 49492841
Alignment:
Q  55 tatattgttggtaaaagataaacatagtttgatactatttaaaagtcacaaacat 109  Q
    ||||||||| |||||||||||| |||||||  || ||||||||||| ||||||||    
T  49492787 tatattgtttgtaaaagataaatatagtttattattatttaaaagttacaaacat 49492841  T

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Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 167
Target Start/End: Complemental strand, 50079769 - 50079690
Alignment:
Q  87 tactatttaaaagtcacaaacatatctatacatataattttaatgaaaa-tcaaaatttcataaaaaacattgcttataatt 167  Q
    |||||||| ||| ||||||||||  ||| |||||||| |||||| |||| ||||||||| ||||||||||||  ||||||||    
T  50079769 tactatttcaaattcacaaacat--ctacacatataaatttaattaaaaatcaaaattttataaaaaacattaattataatt 50079690  T

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Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 153
Target Start/End: Original strand, 54183589 - 54183674
Alignment:
Q  67 aaaagataaacatagtttgatactatttaaaagtcacaaacatatctatacatataattttaatgaaaatcaaaatttcataaaaaa 153  Q
    |||||||||||||  |||  ||| ||||||||| || ||| |||| ||||| |||||||||||| |||| ||||||||||| |||||    
T  54183589 aaaagataaacatcatttattacaatttaaaagccataaa-atatttatacttataattttaataaaaaccaaaatttcattaaaaa 54183674  T

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Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 176
Target Start/End: Complemental strand, 31106475 - 31106418
Alignment:
Q  119 tataattttaatgaaaatcaaaatttcataaaaaacattgcttataatttacacacgt 176  Q
    |||||||||||| ||||||||||||||||| |||| |  | | |||||||||||||||    
T  31106475 tataattttaatcaaaatcaaaatttcatataaaatacggttcataatttacacacgt 31106418  T

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Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 153
Target Start/End: Complemental strand, 32639874 - 32639820
Alignment:
Q  97 aagtcacaaacatatctatacatataattttaatgaaaatcaaaatttcataaaaaa 153  Q
    ||||||||| |||||  ||| ||||||||||||| |||||| |||||||||||||||    
T  32639874 aagtcacaatcatat--ataaatataattttaatcaaaatctaaatttcataaaaaa 32639820  T

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Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 153
Target Start/End: Complemental strand, 594477 - 594445
Alignment:
Q  121 taattttaatgaaaatcaaaatttcataaaaaa 153  Q
    |||||||||| ||||||||||||||||||||||    
T  594477 taattttaatcaaaatcaaaatttcataaaaaa 594445  T

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Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 153
Target Start/End: Original strand, 627988 - 628020
Alignment:
Q  121 taattttaatgaaaatcaaaatttcataaaaaa 153  Q
    |||||||||| ||||||||||||||||||||||    
T  627988 taattttaatcaaaatcaaaatttcataaaaaa 628020  T

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Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 153
Target Start/End: Complemental strand, 12214477 - 12214445
Alignment:
Q  121 taattttaatgaaaatcaaaatttcataaaaaa 153  Q
    |||||||||| ||||||||||||||||||||||    
T  12214477 taattttaatcaaaatcaaaatttcataaaaaa 12214445  T

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Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 172
Target Start/End: Complemental strand, 13273232 - 13273180
Alignment:
Q  120 ataattttaatgaaaatcaaaatttcataaaaaacattgcttataatttacac 172  Q
    |||||||||||||| ||| ||||||||||||| | |||| | |||||||||||    
T  13273232 ataattttaatgaagatctaaatttcataaaagaaattgttcataatttacac 13273180  T

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Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 153
Target Start/End: Complemental strand, 21054012 - 21053980
Alignment:
Q  121 taattttaatgaaaatcaaaatttcataaaaaa 153  Q
    |||||||||| ||||||||||||||||||||||    
T  21054012 taattttaatcaaaatcaaaatttcataaaaaa 21053980  T

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Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 153
Target Start/End: Original strand, 39670319 - 39670351
Alignment:
Q  121 taattttaatgaaaatcaaaatttcataaaaaa 153  Q
    |||||||||| ||||||||||||||||||||||    
T  39670319 taattttaatcaaaatcaaaatttcataaaaaa 39670351  T

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Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 153
Target Start/End: Complemental strand, 47045075 - 47045043
Alignment:
Q  121 taattttaatgaaaatcaaaatttcataaaaaa 153  Q
    |||||||||| ||||||||||||||||||||||    
T  47045075 taattttaatcaaaatcaaaatttcataaaaaa 47045043  T

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Target: scaffold1379 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1379
Description:

Target: scaffold1379; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 153
Target Start/End: Complemental strand, 1573 - 1541
Alignment:
Q  121 taattttaatgaaaatcaaaatttcataaaaaa 153  Q
    |||||||||| ||||||||||||||||||||||    
T  1573 taattttaatcaaaatcaaaatttcataaaaaa 1541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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