View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5053_low_25 (Length: 287)
Name: NF5053_low_25
Description: NF5053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5053_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 151; Significance: 6e-80; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 101 - 268
Target Start/End: Original strand, 43367317 - 43367488
Alignment:
| Q |
101 |
gcggtgaggtgtgatctagtaatattaccagactcttttttatccgttgattttattttcatcaattagtacacaatcct----tatctaattcaccata |
196 |
Q |
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| T |
43367317 |
gcggtgaggtgtgatctagtaatattaccagactcttttttatccgttgattttattttcatcaattagtacacaatccttatctatctaattcaccata |
43367416 |
T |
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| Q |
197 |
tctgtcaatcattatcatcttactactacttctcttctaaccattattagtaactaatcatcatatacttct |
268 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43367417 |
tctgtcaatcatcatcatcttactactacttctcttctaaccattattagtaactaatcatcatatacttct |
43367488 |
T |
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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 43367228 - 43367260
Alignment:
| Q |
1 |
tgtgttgtagttagaatttccataatgcgtgtg |
33 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
43367228 |
tgtgttgtagttagaatttccataatgcgtgtg |
43367260 |
T |
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