View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5053_low_28 (Length: 252)
Name: NF5053_low_28
Description: NF5053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5053_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 8 - 251
Target Start/End: Complemental strand, 13918199 - 13917963
Alignment:
| Q |
8 |
cgaagaatatattcaaatattctttttgttacttctaaacacgacaaagctatgttgcnnnnnnnnnnnnnnnnnncactaaaatatacatatattagat |
107 |
Q |
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| T |
13918199 |
cgaagaaaatattcaaatattctttttgttacttctaaacacgacaaagctatcttgcaaaaagaaaaagaaaaaacactaaaatatacatat--tagaa |
13918102 |
T |
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| Q |
108 |
tggcctaaatcaattcgtgaatttagaacaaataagccacgttattgaggagcattggtagaccaatctagtattatgtatatattttaaaggtagatca |
207 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
13918101 |
c-----aaataaattcgtgaatttagaacaaataagccacgttattgaggagcattggtagaccaatctagtattatgtatatattttaaaggtagacca |
13918007 |
T |
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| Q |
208 |
atctcgagtgaataataacacaatagatgggatcatatatatat |
251 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13918006 |
atctcgagtgaataataacacaatagatgggatcatatatatat |
13917963 |
T |
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