View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5053_low_30 (Length: 250)
Name: NF5053_low_30
Description: NF5053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5053_low_30 |
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| [»] chr2 (1 HSPs) |
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| [»] scaffold0374 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 29923587 - 29923824
Alignment:
| Q |
13 |
aatatttacggatgacaaattcgatgaaagcaccagttgatgcaataaagttgattgcactcttcgagtcaatgtcaaactccaaattttactcattaaa |
112 |
Q |
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| T |
29923587 |
aatatttacggatgacaaattcgatgaaagcaccagttgatacaataaagttaattgcactcttcgagttagtgtcaaactccaaattttactcattaaa |
29923686 |
T |
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| Q |
113 |
tacttattatttcttgatacctttcaaagtctcaaaaagagttacttatatacaaagttatgaaactaaattctcaattatttatcctaacatatcaaac |
212 |
Q |
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| T |
29923687 |
tacttattatttcttgatacctttcaaagtctcaaaaagagttacttatatacaaagttatgaaactaaattctcaattatttatcctaacatatcaaac |
29923786 |
T |
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| Q |
213 |
gaatttaagactaatatcatattattaatggatagtaa |
250 |
Q |
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| T |
29923787 |
aaatttaaaactaatatcatattattaatggatagtaa |
29923824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0374 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold0374
Description:
Target: scaffold0374; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 68 - 241
Target Start/End: Complemental strand, 14711 - 14539
Alignment:
| Q |
68 |
tgcactcttcgagtcaatgtcaaactccaaattttactcattaaatacttattatttcttgatacctttcaaagtctcaaaaagagttacttatatacaa |
167 |
Q |
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| T |
14711 |
tgcacttttcgagtcagtgccaaactccaaattttactcactaaatttttattatttcttgataccttttaaagtctc-tacagatttatttatatacaa |
14613 |
T |
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| Q |
168 |
agttatgaaactaaattctcaattatttatcctaacatatcaaacgaatttaagactaatatcatattattaat |
241 |
Q |
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| T |
14612 |
gcacatgaaactaaatttcctattattagtcctaacataacaaacaaatttagaactactttcatattattaat |
14539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 66 - 184
Target Start/End: Original strand, 24658033 - 24658150
Alignment:
| Q |
66 |
attgcactcttcgagtcaatgtcaaactccaaattttactcattaaatacttattatttcttgatacctttcaaagtctcaaaaagagttacttatatac |
165 |
Q |
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|||||||||||| ||||| || ||||||| || ||||||||| | |||||| ||||||||| ||||||||||||||||| || ||||| |||||||| |
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| T |
24658033 |
attgcactcttcaagtcagtgccaaactctaatttttactcacttaatactaattatttctcaatacctttcaaagtctc-gaagtagttatttatatac |
24658131 |
T |
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| Q |
166 |
aaagttatgaaactaaatt |
184 |
Q |
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| T |
24658132 |
aaggatatgaaacaaaatt |
24658150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 247
Target Start/End: Original strand, 13268592 - 13268692
Alignment:
| Q |
148 |
aaagagttacttatatacaaagttatgaaactaaattctcaattattta-tcctaacatatcaaacgaatttaagactaatatcatattattaatggata |
246 |
Q |
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| T |
13268592 |
aaagagttatttatatacaaggatatgaaactaaatttcctattatttactcctagcataacaagtggatttaaaactactttcctattattaatggata |
13268691 |
T |
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| Q |
247 |
g |
247 |
Q |
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| T |
13268692 |
g |
13268692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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