View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5053_low_35 (Length: 244)
Name: NF5053_low_35
Description: NF5053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5053_low_35 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 22788334 - 22788091
Alignment:
| Q |
1 |
atactcataggtaatacttcttccacattgattatttttctatttgtaataaatgtccacaagcaaaaattagaatacatttagtataacaaagttatat |
100 |
Q |
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| T |
22788334 |
atactcataggtaatacttcttccacattgattatttttctatttgtaataaatgtccacaagcaaaaattagaatacatttagtataacaaagttatat |
22788235 |
T |
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| Q |
101 |
attttcagagccaatggcaaagagtattatgtgtttgtttattagttagtttcaagagtcaagatcatgtttgactagtttcagagccgtctttaggaag |
200 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
22788234 |
tttttcagagccaatggcaaagagtcttatgtgtttgtttattagttagttttaagagtcaagatcatgtttgactagtttcagagccgtctctgtgaag |
22788135 |
T |
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| Q |
201 |
gtgcaaacagttctatagagttggacctccaaaattttgggacc |
244 |
Q |
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| T |
22788134 |
gtgcaaacagttgtatagagttggacctccaaaattttgggacc |
22788091 |
T |
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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 241
Target Start/End: Complemental strand, 17388085 - 17388043
Alignment:
| Q |
199 |
aggtgcaaacagttctatagagttggacctccaaaattttggg |
241 |
Q |
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| T |
17388085 |
aggtgcaaacagctctatagagttggacctcctcaattttggg |
17388043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 241
Target Start/End: Original strand, 4491445 - 4491505
Alignment:
| Q |
181 |
tcagagccgtctttaggaaggtgcaaacagttctatagagttggacctccaaaattttggg |
241 |
Q |
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| T |
4491445 |
tcagggccgtctatggggaggtgcaaacagctctattgagttggacctccccaattttggg |
4491505 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 29800589 - 29800545
Alignment:
| Q |
186 |
gccgtctttaggaaggtgcaaacagttctatagagttggacctcc |
230 |
Q |
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| T |
29800589 |
gccgtctttaaggatgtgcaaacagttctatagagttgggcctcc |
29800545 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 241
Target Start/End: Original strand, 52090046 - 52090086
Alignment:
| Q |
201 |
gtgcaaacagttctatagagttggacctccaaaattttggg |
241 |
Q |
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|||||||||| ||||| ||||||| |||||||||||||||| |
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| T |
52090046 |
gtgcaaacagctctatggagttgggcctccaaaattttggg |
52090086 |
T |
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