View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5053_low_39 (Length: 239)
Name: NF5053_low_39
Description: NF5053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5053_low_39 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 23 - 226
Target Start/End: Complemental strand, 53984915 - 53984712
Alignment:
| Q |
23 |
atctacctctacacacgtcttaatgctccctccatcttattacaggaaatagagaatggaatttatgaggacatttggcactatccacaaaatattccga |
122 |
Q |
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| T |
53984915 |
atctacctctacacacgtcttaatgctccctccatcttattacaggaaatagagaatggaatttatgaggacatttggcactatccacaaaatattccga |
53984816 |
T |
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| Q |
123 |
cgtgcatttcatctcagttaagaacttgtttgtttaaaggttgtaaaggcatgaagagtgagctacaatttgcagagtatgttatgcaaaattcgaaagt |
222 |
Q |
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| T |
53984815 |
cgtgcatttcatctcagttaagaacttgtttgtttaaaggttgtaaaggcatgaagagtgagctacaatttgcagagtatgttatgcaaaattcgaaagt |
53984716 |
T |
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| Q |
223 |
atta |
226 |
Q |
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|||| |
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| T |
53984715 |
atta |
53984712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 50 - 226
Target Start/End: Complemental strand, 53971183 - 53971007
Alignment:
| Q |
50 |
ccctccatcttattacaggaaatagagaatggaatttatgaggacatttggcactatccacaaaatattccgacgtgcatttcatctcagttaagaactt |
149 |
Q |
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| T |
53971183 |
ccctccgtcttattgtaggagatggaggatggaatttatgaggacaattggcaggacccacaaaatgttccgacatgtatttcatctcagctaagaactt |
53971084 |
T |
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| Q |
150 |
gtttgtttaaaggttgtaaaggcatgaagagtgagctacaatttgcagagtatgttatgcaaaattcgaaagtatta |
226 |
Q |
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| T |
53971083 |
gtttgtttaaagactgtaaaggaaggaagagtgagcttgaatttgcatagtatgttatgcaaaattcaaaagtatta |
53971007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 133 - 213
Target Start/End: Original strand, 44253577 - 44253657
Alignment:
| Q |
133 |
atctcagttaagaacttgtttgtttaaaggttgtaaaggcatgaagagtgagctacaatttgcagagtatgttatgcaaaa |
213 |
Q |
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| T |
44253577 |
atctcagctaagaatttgcttgtttacaggttgtagaggcagaaagtgtgagcttcaatttgcagagtatgttatgcaaaa |
44253657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 226
Target Start/End: Original strand, 6688403 - 6688447
Alignment:
| Q |
182 |
gagctacaatttgcagagtatgttatgcaaaattcgaaagtatta |
226 |
Q |
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| T |
6688403 |
gagcttcaatttgcagaatatgttatgcacaattcaaaagtatta |
6688447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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