View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5053_low_42 (Length: 223)

Name: NF5053_low_42
Description: NF5053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5053_low_42
NF5053_low_42
[»] chr5 (7 HSPs)
chr5 (128-209)||(31640493-31640574)
chr5 (1-63)||(17064394-17064456)
chr5 (1-59)||(20983006-20983064)
chr5 (78-127)||(31640331-31640380)
chr5 (3-63)||(37976623-37976683)
chr5 (1-63)||(41910895-41910957)
chr5 (2-57)||(31673901-31673956)
[»] chr4 (20 HSPs)
chr4 (1-62)||(36192612-36192673)
chr4 (1-63)||(22304090-22304152)
chr4 (1-59)||(46494401-46494459)
chr4 (1-63)||(7173584-7173646)
chr4 (1-63)||(30970383-30970445)
chr4 (1-59)||(51066564-51066622)
chr4 (1-63)||(2570272-2570334)
chr4 (1-63)||(29576486-29576548)
chr4 (1-63)||(51713964-51714026)
chr4 (1-63)||(55231758-55231820)
chr4 (1-63)||(39863777-39863839)
chr4 (1-58)||(37990599-37990656)
chr4 (1-63)||(676799-676861)
chr4 (1-59)||(23084468-23084526)
chr4 (1-63)||(32139235-32139297)
chr4 (1-59)||(41523468-41523526)
chr4 (1-63)||(47626992-47627054)
chr4 (4-59)||(2294719-2294774)
chr4 (1-60)||(51279035-51279094)
chr4 (1-63)||(50905819-50905881)
[»] chr3 (17 HSPs)
chr3 (1-70)||(7417869-7417938)
chr3 (1-63)||(8400926-8400988)
chr3 (1-63)||(50823769-50823831)
chr3 (1-63)||(50852029-50852091)
chr3 (1-63)||(52545392-52545454)
chr3 (1-63)||(35198836-35198898)
chr3 (1-63)||(37330606-37330668)
chr3 (1-63)||(37454743-37454805)
chr3 (1-70)||(22855958-22856027)
chr3 (1-62)||(30534902-30534963)
chr3 (3-59)||(43334057-43334113)
chr3 (1-63)||(19872482-19872544)
chr3 (1-63)||(25910665-25910727)
chr3 (1-59)||(34824627-34824685)
chr3 (1-70)||(22371721-22371790)
chr3 (1-59)||(55468070-55468129)
chr3 (19-63)||(773666-773710)
[»] chr8 (17 HSPs)
chr8 (1-63)||(11404072-11404134)
chr8 (1-63)||(29767257-29767319)
chr8 (1-59)||(17095621-17095679)
chr8 (1-63)||(22711580-22711642)
chr8 (1-63)||(32296638-32296700)
chr8 (2-63)||(27879559-27879620)
chr8 (2-63)||(28019740-28019801)
chr8 (1-59)||(11909426-11909484)
chr8 (1-63)||(19723382-19723444)
chr8 (1-59)||(28739564-28739622)
chr8 (1-63)||(30682910-30682971)
chr8 (1-63)||(36261717-36261779)
chr8 (1-63)||(41553356-41553418)
chr8 (1-62)||(4840211-4840272)
chr8 (7-63)||(11610357-11610413)
chr8 (3-63)||(43288145-43288205)
chr8 (1-42)||(21355004-21355045)
[»] chr7 (15 HSPs)
chr7 (1-63)||(245263-245325)
chr7 (1-63)||(35109762-35109824)
chr7 (1-63)||(37095209-37095271)
chr7 (1-62)||(38265237-38265298)
chr7 (5-59)||(16059356-16059410)
chr7 (1-63)||(21577097-21577159)
chr7 (1-63)||(41151244-41151306)
chr7 (1-63)||(34721905-34721967)
chr7 (1-59)||(38405157-38405215)
chr7 (1-59)||(18116947-18117005)
chr7 (9-63)||(45278531-45278585)
chr7 (1-58)||(12472192-12472249)
chr7 (3-63)||(23028756-23028816)
chr7 (3-59)||(48176472-48176529)
chr7 (1-57)||(11216840-11216896)
[»] chr6 (6 HSPs)
chr6 (1-63)||(35163749-35163811)
chr6 (1-63)||(20685396-20685458)
chr6 (1-63)||(17948751-17948813)
chr6 (4-51)||(15070199-15070246)
chr6 (1-62)||(19686827-19686888)
chr6 (1-63)||(14505524-14505585)
[»] chr2 (20 HSPs)
chr2 (1-63)||(36380131-36380193)
chr2 (1-63)||(2754050-2754112)
chr2 (1-63)||(17136458-17136520)
chr2 (1-63)||(33066661-33066723)
chr2 (1-63)||(40156111-40156173)
chr2 (1-63)||(45136969-45137031)
chr2 (1-63)||(5039491-5039553)
chr2 (1-51)||(6672804-6672854)
chr2 (1-63)||(10745231-10745293)
chr2 (1-63)||(36836328-36836390)
chr2 (1-70)||(13047148-13047217)
chr2 (1-63)||(558438-558500)
chr2 (13-63)||(2098825-2098875)
chr2 (1-63)||(21637968-21638030)
chr2 (1-63)||(44650464-44650526)
chr2 (11-63)||(2357075-2357127)
chr2 (11-63)||(26690235-26690287)
chr2 (1-63)||(21487219-21487282)
chr2 (1-63)||(25987660-25987723)
chr2 (1-60)||(30372682-30372741)
[»] chr1 (15 HSPs)
chr1 (1-59)||(30054445-30054503)
chr1 (1-62)||(22024174-22024235)
chr1 (3-63)||(12025254-12025314)
chr1 (2-62)||(17015192-17015252)
chr1 (1-61)||(30370061-30370121)
chr1 (4-63)||(45324080-45324139)
chr1 (1-63)||(20014529-20014591)
chr1 (1-51)||(21090186-21090236)
chr1 (1-63)||(14498078-14498140)
chr1 (1-51)||(35371756-35371806)
chr1 (1-61)||(30850841-30850901)
chr1 (3-63)||(33762539-33762599)
chr1 (1-59)||(35618046-35618104)
chr1 (3-62)||(33763254-33763313)
chr1 (1-63)||(4573450-4573512)
[»] scaffold0021 (1 HSPs)
scaffold0021 (1-63)||(107691-107752)
[»] scaffold0691 (1 HSPs)
scaffold0691 (1-38)||(6993-7030)


Alignment Details
Target: chr5 (Bit Score: 74; Significance: 4e-34; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 128 - 209
Target Start/End: Original strand, 31640493 - 31640574
Alignment:
Q  128 ttagtcaggagtccagaagaaagtcatgaccagctgcgtttgtgagcacctgaagaaatgaccatgtttgttcttgcacagg 209  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  31640493 ttagtcaagagtccagaagaaagtcatgaccagctgcgtttgcgagcacctgaagaaatgaccatgtttgttcttgcacagg 31640574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 17064394 - 17064456
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaatttt 63  Q
    ||||| |||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||    
T  17064394 tctttaagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaatttt 17064456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 20983064 - 20983006
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaa 59  Q
    |||||||||||||| ||||||||| |||||||||||| ||||||||||||| |||||||    
T  20983064 tctttgagcccgaaagtcttccctgccttggactggggcaccatcccctcaccctaaaa 20983006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 78 - 127
Target Start/End: Original strand, 31640331 - 31640380
Alignment:
Q  78 tacctttgaagaaaatagcttggccaatttcttggtcgctaactcttttc 127  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  31640331 tacctttgaagaaaatagcttcgccaatttcttggtcactaactcttttc 31640380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 37976623 - 37976683
Alignment:
Q  3 tttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaatttt 63  Q
    ||||||||||||||| || ||| ||||| |||||| ||||||||||||| |||||||||||    
T  37976623 tttgagcccgaaggtttttcctgccttgaactggggcaccatcccctcaccctaaaatttt 37976683  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 41910895 - 41910957
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaatttt 63  Q
    |||||||||||||| |||||| || ||||| |||||| ||||||||||||| | |||||||||    
T  41910895 tctttgagcccgaatgtcttctctgccttgaactggggcaccatcccctcaccttaaaatttt 41910957  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 31673901 - 31673956
Alignment:
Q  2 ctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaa 57  Q
    |||||||||| |||||| ||||| |||||||||||| ||||| ||||||| |||||    
T  31673901 ctttgagccctaaggtcctccctgccttggactggggcaccaacccctcaccctaa 31673956  T

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Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 36192612 - 36192673
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaattt 62  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  36192612 tctttgagcccgaaggtcttccctaccttggactggggcaccatcccctcaccctaaaattt 36192673  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 22304152 - 22304090
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaatttt 63  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||    
T  22304152 tctttgagcccgaaggtcttccctaccttggactggggcaccatcctctcaccctaaaatttt 22304090  T

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Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 46494459 - 46494401
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaa 59  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  46494459 tctttgagcccgaaggtcttccctaccttggactggggcaccatcccctcaccctaaaa 46494401  T

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Target: chr4; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 7173646 - 7173584
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaatttt 63  Q
    |||||||||||||||||||||||| | |||||||||| ||||||||||||| |||||||||||    
T  7173646 tctttgagcccgaaggtcttccctgcgttggactggggcaccatcccctcaccctaaaatttt 7173584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 30970445 - 30970383
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaatttt 63  Q
    ||||||||| ||||||||||||||||||| ||||||| ||||||||||||| |||||||||||    
T  30970445 tctttgagctcgaaggtcttccctaccttagactggggcaccatcccctcaccctaaaatttt 30970383  T

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Target: chr4; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 51066564 - 51066622
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaa 59  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||    
T  51066564 tctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaa 51066622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 2570272 - 2570334
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaatttt 63  Q
    |||||||| |||||| |||||||| |||||||||||| ||||||||||||| |||||||||||    
T  2570272 tctttgagtccgaagatcttccctgccttggactggggcaccatcccctcaccctaaaatttt 2570334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 29576486 - 29576548
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaatttt 63  Q
    |||||||||||||||||||||||| ||||||| |||| ||||| ||||||| |||||||||||    
T  29576486 tctttgagcccgaaggtcttccctgccttggattggggcaccaccccctcaccctaaaatttt 29576548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 51714026 - 51713964
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaatttt 63  Q
    |||||||||||||||||||||||| | ||| |||||| ||||||||||||| |||||||||||    
T  51714026 tctttgagcccgaaggtcttccctgctttgaactggggcaccatcccctcaccctaaaatttt 51713964  T

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Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 55231758 - 55231820
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaatttt 63  Q
    |||||||||| ||| ||||||||| |||||||||||| ||||||||||||| |||||||||||    
T  55231758 tctttgagcctgaatgtcttccctgccttggactggggcaccatcccctcaccctaaaatttt 55231820  T

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Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 39863839 - 39863777
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaatttt 63  Q
    ||||||| ||||||||||||| ||||||||||||| | ||| ||||||||| |||||||||||    
T  39863839 tctttgaacccgaaggtcttctctaccttggactgagacactatcccctcaccctaaaatttt 39863777  T

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Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 37990656 - 37990599
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaa 58  Q
    |||||||||| |||| ||||||||||||||||||||| |||||| |||||| ||||||    
T  37990656 tctttgagcctgaagatcttccctaccttggactggggcaccattccctcatcctaaa 37990599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 676799 - 676861
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaatttt 63  Q
    |||||||||||||||||||||||| ||||||||||   ||||||||||| | | |||||||||    
T  676799 tctttgagcccgaaggtcttccctgccttggactgtaacaccatccccttaccttaaaatttt 676861  T

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Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 23084526 - 23084468
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaa 59  Q
    |||||||| ||||||||||||||||||||| ||||||  |||||| ||||| |||||||    
T  23084526 tctttgagtccgaaggtcttccctaccttgaactggggtaccatctcctcaccctaaaa 23084468  T

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Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 32139235 - 32139297
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaatttt 63  Q
    |||||||||| |||||||||| || |||||||||||| ||||||||| ||| |||||| ||||    
T  32139235 tctttgagcctgaaggtcttctctgccttggactggggcaccatcccttcaccctaaattttt 32139297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 41523468 - 41523526
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaa 59  Q
    ||||||||| ||||||||||||||| |||||| |||| ||||||||| ||| |||||||    
T  41523468 tctttgagctcgaaggtcttccctatcttggattgggacaccatcccttcatcctaaaa 41523526  T

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Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 47627054 - 47626992
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaatttt 63  Q
    ||||||| | |||||||||||||| |||||||||||  ||||||| ||||| |||||||||||    
T  47627054 tctttgaactcgaaggtcttccctgccttggactggaacaccatctcctcaccctaaaatttt 47626992  T

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Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 2294774 - 2294719
Alignment:
Q  4 ttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaa 59  Q
    ||||||||||| |||||| || |||| ||||||| ||||||||||||| |||||||    
T  2294774 ttgagcccgaaagtcttcactgccttagactggggcaccatcccctcaccctaaaa 2294719  T

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Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 51279094 - 51279035
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaat 60  Q
    ||||||||||| ||||||||||| |||||||| |  | ||||||||||||| ||||||||    
T  51279094 tctttgagcccaaaggtcttcccaaccttggattaaggcaccatcccctcaccctaaaat 51279035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 50905819 - 50905881
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaatttt 63  Q
    |||||||| ||||||||||||| | ||||| |||||| ||||||||  ||| |||||||||||    
T  50905819 tctttgagtccgaaggtcttccatgccttgaactggggcaccatcctttcaccctaaaatttt 50905881  T

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Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 7417869 - 7417938
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaattttccttacc 70  Q
    ||||||||||||||||||||| || |||||||||||| ||||||||||||| ||||||||||||||||||    
T  7417869 tctttgagcccgaaggtcttcactgccttggactggggcaccatcccctcaccctaaaattttccttacc 7417938  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 8400926 - 8400988
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaatttt 63  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||    
T  8400926 tctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaatttt 8400988  T

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Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 50823769 - 50823831
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaatttt 63  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||    
T  50823769 tctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaatttt 50823831  T

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Target: chr3; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 50852091 - 50852029
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaatttt 63  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||    
T  50852091 tctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaatttt 50852029  T

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Target: chr3; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 52545392 - 52545454
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaatttt 63  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||    
T  52545392 tctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaatttt 52545454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 35198836 - 35198898
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaatttt 63  Q
    |||||||||||||||||||||||| |||||||||||  ||||||||||||| |||||||||||    
T  35198836 tctttgagcccgaaggtcttccctgccttggactggagcaccatcccctcaccctaaaatttt 35198898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 37330668 - 37330606
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaatttt 63  Q
    |||||||| ||||||||||||||| |||||||||||| ||||||||||||| |||||||||||    
T  37330668 tctttgagtccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaatttt 37330606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 37454805 - 37454743
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaatttt 63  Q
    ||||||||||||||||||||||||||||| || |||| ||||||||||||| |||||||||||    
T  37454805 tctttgagcccgaaggtcttccctaccttagattggggcaccatcccctcaccctaaaatttt 37454743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 22855958 - 22856027
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaattttccttacc 70  Q
    ||||| ||||| |||||||||||| |||||||||||  ||||||||||||| ||||||||||||||||||    
T  22855958 tctttaagcccaaaggtcttccctgccttggactggagcaccatcccctcaccctaaaattttccttacc 22856027  T

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Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 30534963 - 30534902
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaattt 62  Q
    ||||||||||||||| |||||||| ||||||||||||  |||||||||||| ||||||||||    
T  30534963 tctttgagcccgaagatcttccctgccttggactggggtaccatcccctcaccctaaaattt 30534902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 43334113 - 43334057
Alignment:
Q  3 tttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaa 59  Q
    |||||||||||||||||||||| ||||||||||||  |||||||||||| |||||||    
T  43334113 tttgagcccgaaggtcttccctgccttggactggggtaccatcccctcaccctaaaa 43334057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 19872544 - 19872482
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaatttt 63  Q
    |||||||  |||||||||||||||  ||||||||||| ||||||||||||| |||||||||||    
T  19872544 tctttgaatccgaaggtcttccctgtcttggactggggcaccatcccctcatcctaaaatttt 19872482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 25910727 - 25910665
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaatttt 63  Q
    |||||||| |||||| |||||||| |||||||||| | ||||||||||||| |||||||||||    
T  25910727 tctttgagtccgaagatcttccctgccttggactgaggcaccatcccctcaccctaaaatttt 25910665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 34824627 - 34824685
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaa 59  Q
    ||||||| |||||||||||||||  |||||||||||| ||||||||||||| |||||||    
T  34824627 tctttgatcccgaaggtcttcccggccttggactggggcaccatcccctcaccctaaaa 34824685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 22371790 - 22371721
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaattttccttacc 70  Q
    ||||||| ||||||| |||||||| | || ||||||| ||||||||||||| |||||||||| |||||||    
T  22371790 tctttgaacccgaagatcttccctgctttagactggggcaccatcccctcaccctaaaatttaccttacc 22371721  T

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Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 55468070 - 55468129
Alignment:
Q  1 tctttgagccc-gaaggtcttccctaccttggactgggccaccatcccctcaacctaaaa 59  Q
    ||||||||||| |||||||||| || |||||||||||| ||||||||||||| |||||||    
T  55468070 tctttgagccccgaaggtcttctctgccttggactggggcaccatcccctcaccctaaaa 55468129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 773666 - 773710
Alignment:
Q  19 ttccctaccttggactgggccaccatcccctcaacctaaaatttt 63  Q
    |||||| |||||||||||| ||||||||||||| |||| ||||||    
T  773666 ttcccttccttggactggggcaccatcccctcaccctagaatttt 773710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 11404072 - 11404134
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaatttt 63  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||    
T  11404072 tctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaatttt 11404134  T

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Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 29767257 - 29767319
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaatttt 63  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||    
T  29767257 tctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaatttt 29767319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 17095621 - 17095679
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaa 59  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||    
T  17095621 tctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaa 17095679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 22711580 - 22711642
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaatttt 63  Q
    |||||||||||||||||||||| | |||||||||||| ||||||||||||| |||||||||||    
T  22711580 tctttgagcccgaaggtcttccttgccttggactggggcaccatcccctcatcctaaaatttt 22711642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 32296700 - 32296638
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaatttt 63  Q
    |||||||||||||||||||||||| ||||||| |||| ||||||||||||| |||||||||||    
T  32296700 tctttgagcccgaaggtcttccctgccttggattggggcaccatcccctcaccctaaaatttt 32296638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 27879620 - 27879559
Alignment:
Q  2 ctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaatttt 63  Q
    ||||||||| |||| ||||||||||||||||||||| ||||||||||||| |||||||||||    
T  27879620 ctttgagcctgaagatcttccctaccttggactggggcaccatcccctcaccctaaaatttt 27879559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 28019801 - 28019740
Alignment:
Q  2 ctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaatttt 63  Q
    ||||||||| |||| ||||||||||||||||||||| ||||||||||||| |||||||||||    
T  28019801 ctttgagcctgaagatcttccctaccttggactggggcaccatcccctcaccctaaaatttt 28019740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 11909484 - 11909426
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaa 59  Q
    ||||||||| |||||||||||||| |||||||||||| ||||||||||||| |||||||    
T  11909484 tctttgagctcgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaa 11909426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 19723382 - 19723444
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaatttt 63  Q
    ||||||||||| ||| |||||||| |||||||||||| ||||||||||||| |||||||||||    
T  19723382 tctttgagcccaaagatcttccctgccttggactggggcaccatcccctcaccctaaaatttt 19723444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 28739622 - 28739564
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaa 59  Q
    |||||||||||||||||||||||||||||||||||   ||||||||||||| |||||||    
T  28739622 tctttgagcccgaaggtcttccctaccttggactgcagcaccatcccctcaccctaaaa 28739564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 30682910 - 30682971
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaatttt 63  Q
    ||||||||||||||| |||||||| |||||||||||| ||||||||||||| | |||||||||    
T  30682910 tctttgagcccgaagatcttccctgccttggactggg-caccatcccctcaccttaaaatttt 30682971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 36261717 - 36261779
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaatttt 63  Q
    ||||||||||||||| |||||||| ||||| |||||| ||||||||||||| | |||||||||    
T  36261717 tctttgagcccgaagatcttccctgccttgaactggggcaccatcccctcaccttaaaatttt 36261779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 41553356 - 41553418
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaatttt 63  Q
    ||||||||| |||||||||||||| |||| ||||||  ||||||||||||| |||||||||||    
T  41553356 tctttgagctcgaaggtcttccctgccttagactggagcaccatcccctcaccctaaaatttt 41553418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 4840211 - 4840272
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaattt 62  Q
    |||||||| || |||||||||||| ||||||||| || ||||||||||||| ||||||||||    
T  4840211 tctttgagtccaaaggtcttccctgccttggactagggcaccatcccctcaccctaaaattt 4840272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 11610357 - 11610413
Alignment:
Q  7 agcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaatttt 63  Q
    |||||||||||||| | || ||||||||||| ||||||||||||| |||||||||||    
T  11610357 agcccgaaggtcttacttatcttggactggggcaccatcccctcaccctaaaatttt 11610413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 43288145 - 43288205
Alignment:
Q  3 tttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaatttt 63  Q
    |||||| ||||||||||||||| |||||||||||  ||||||||||||| |||||| ||||    
T  43288145 tttgagtccgaaggtcttccctgccttggactggagcaccatcccctcaccctaaattttt 43288205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 21355045 - 21355004
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccacc 42  Q
    ||||||| |||||||||||||||| |||||||||||| ||||    
T  21355045 tctttgaacccgaaggtcttccctgccttggactggggcacc 21355004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 245325 - 245263
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaatttt 63  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||    
T  245325 tctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaatttt 245263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 35109762 - 35109824
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaatttt 63  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||    
T  35109762 tctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaatttt 35109824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 37095271 - 37095209
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaatttt 63  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||    
T  37095271 tctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaatttt 37095209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 38265298 - 38265237
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaattt 62  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||    
T  38265298 tctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattt 38265237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 16059410 - 16059356
Alignment:
Q  5 tgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaa 59  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  16059410 tgagcccgaaggtcttccctaccttggactggggcaccatcccctcaccctaaaa 16059356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 21577159 - 21577097
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaatttt 63  Q
    |||||||| ||||||||||||||| |||||||||||| ||||||||||||| |||||||||||    
T  21577159 tctttgagtccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaatttt 21577097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 41151244 - 41151306
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaatttt 63  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||| ||||    
T  41151244 tctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaattttt 41151306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 34721905 - 34721967
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaatttt 63  Q
    |||||||||||||||| ||||||| ||||||||| || ||||||||||||| |||||||||||    
T  34721905 tctttgagcccgaaggacttccctgccttggactcgggcaccatcccctcaccctaaaatttt 34721967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 38405215 - 38405157
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaa 59  Q
    ||||||| |||||||||||||||| |||||||||||| ||||||||||||| |||||||    
T  38405215 tctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaa 38405157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 18117005 - 18116947
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaa 59  Q
    ||||||||  ||||| |||||||| |||||||||||| ||||||||||||| |||||||    
T  18117005 tctttgaggtcgaagatcttccctgccttggactggggcaccatcccctcaccctaaaa 18116947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 63
Target Start/End: Original strand, 45278531 - 45278585
Alignment:
Q  9 cccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaatttt 63  Q
    |||||| ||||||||| |||||||||||  ||||||||||||| |||||||||||    
T  45278531 cccgaatgtcttccctgccttggactggagcaccatcccctcaccctaaaatttt 45278585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 12472192 - 12472249
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaa 58  Q
    ||||||||| ||||||||||||||  |||||||||||  |||||||||||| ||||||    
T  12472192 tctttgagcacgaaggtcttccctgtcttggactggggtaccatcccctcaccctaaa 12472249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 23028756 - 23028816
Alignment:
Q  3 tttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaatttt 63  Q
    ||||| |||||||| |||||||||||| ||||| | |||||||| |||| |||||||||||    
T  23028756 tttgaacccgaaggccttccctaccttagactgagacaccatcctctcatcctaaaatttt 23028816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 48176472 - 48176529
Alignment:
Q  3 tttgagcccgaaggtcttccctacc-ttggactgggccaccatcccctcaacctaaaa 59  Q
    |||||||| |||||| |||||| || |||||||||| ||||||||||||| |||||||    
T  48176472 tttgagccggaaggttttccctccccttggactggggcaccatcccctcaccctaaaa 48176529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 11216840 - 11216896
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaa 57  Q
    ||||||||||||||||||||| |||| ||||||| || || ||| |||||| |||||    
T  11216840 tctttgagcccgaaggtcttctctactttggactagggcatcattccctcaccctaa 11216896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 35163811 - 35163749
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaatttt 63  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||    
T  35163811 tctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaatttt 35163749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 20685396 - 20685458
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaatttt 63  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||| ||| |||||||||||    
T  20685396 tctttgagcccgaaggtcttccctgccttggactggggcaccatcccttcaccctaaaatttt 20685458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 17948751 - 17948813
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaatttt 63  Q
    ||||||||||||||||||||||||  ||||||||||| ||||||||||||| | |||||||||    
T  17948751 tctttgagcccgaaggtcttccctgtcttggactgggacaccatcccctcaccttaaaatttt 17948813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 15070199 - 15070246
Alignment:
Q  4 ttgagcccgaaggtcttccctaccttggactgggccaccatcccctca 51  Q
    ||||||||||||||||||||| |||| ||||||| |||||||||||||    
T  15070199 ttgagcccgaaggtcttccctgccttagactggggcaccatcccctca 15070246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 19686888 - 19686827
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaattt 62  Q
    ||||||||||||||| |||| ||| |||| ||||||| || |||||||||| ||||||||||    
T  19686888 tctttgagcccgaagatctttcctcccttagactggggcatcatcccctcaccctaaaattt 19686827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 14505585 - 14505524
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaatttt 63  Q
    |||||| || ||||| |||||| | |||||||||||| |||||||||||| ||||||||||||    
T  14505585 tctttgggcgcgaagatcttccgtgccttggactggggcaccatcccctc-acctaaaatttt 14505524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 36380193 - 36380131
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaatttt 63  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||    
T  36380193 tctttgagcccgaaggtcttccctaccttggactgaggcaccatcccctcaccctaaaatttt 36380131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 2754112 - 2754050
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaatttt 63  Q
    ||||||||| |||||||||||||| |||||||||||| ||||||||||||| |||||||||||    
T  2754112 tctttgagctcgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaatttt 2754050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 17136458 - 17136520
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaatttt 63  Q
    |||||||||||||||||||||||  |||||||||||| ||||||||||||| |||||||||||    
T  17136458 tctttgagcccgaaggtcttccccgccttggactggggcaccatcccctcaccctaaaatttt 17136520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 33066661 - 33066723
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaatttt 63  Q
    |||||||||| |||||||||| ||||||||||||||| ||||||||||||| |||||||||||    
T  33066661 tctttgagcctgaaggtcttctctaccttggactggggcaccatcccctcatcctaaaatttt 33066723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 40156111 - 40156173
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaatttt 63  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||||| | |||||||||    
T  40156111 tctttgagcccgaaggtcttccctaccttgaactggggcaccatcccctcaccataaaatttt 40156173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 45137031 - 45136969
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaatttt 63  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||| ||| |||||||||||    
T  45137031 tctttgagcccgaaggtcttccctgccttggactggggcaccatcccttcaccctaaaatttt 45136969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 5039491 - 5039553
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaatttt 63  Q
    ||||||||||||||| |||||||||||||||||| || |||||||||||||  ||||||||||    
T  5039491 tctttgagcccgaagatcttccctaccttggactagggcaccatcccctcactctaaaatttt 5039553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 6672854 - 6672804
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctca 51  Q
    |||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  6672854 tctttgagcccgaaggtcttccctgccttggactggggcaccatcccctca 6672804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 10745293 - 10745231
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaatttt 63  Q
    ||||||| ||||||||| |||||| |||||||||||| ||||||||||||| |||||||||||    
T  10745293 tctttgaacccgaaggtattccctgccttggactggggcaccatcccctcaccctaaaatttt 10745231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 36836390 - 36836328
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaatttt 63  Q
    ||||||||||||||| |||||||| |||||||||||| ||||||||||||| | |||||||||    
T  36836390 tctttgagcccgaagatcttccctgccttggactggggcaccatcccctcaccttaaaatttt 36836328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 13047217 - 13047148
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaattttccttacc 70  Q
    ||||||||||| ||| |||||||| |||||||||||  ||||||||||||| |||||||||| |||||||    
T  13047217 tctttgagcccaaagatcttccctgccttggactggagcaccatcccctcaccctaaaatttaccttacc 13047148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 558500 - 558438
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaatttt 63  Q
    |||||||||  ||||||||||||| ||||||| |||| ||||||||||||| |||||||||||    
T  558500 tctttgagctagaaggtcttcccttccttggaatggggcaccatcccctcaccctaaaatttt 558438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 63
Target Start/End: Complemental strand, 2098875 - 2098825
Alignment:
Q  13 aaggtcttccctaccttggactgggccaccatcccctcaacctaaaatttt 63  Q
    |||||||||||| |||||||||||| ||||||||||||| |||||||||||    
T  2098875 aaggtcttccctgccttggactggggcaccatcccctcaccctaaaatttt 2098825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 21637968 - 21638030
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaatttt 63  Q
    ||||||||||| ||||||||| || ||||||||| || ||||||||||||| |||||||||||    
T  21637968 tctttgagcccaaaggtcttctctgccttggactagggcaccatcccctcaccctaaaatttt 21638030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 44650464 - 44650526
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaatttt 63  Q
    |||||||| |||||| |||||||| |||||||| ||| ||||||||||||| |||||||||||    
T  44650464 tctttgagtccgaagatcttccctgccttggaccggggcaccatcccctcaccctaaaatttt 44650526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 2357127 - 2357075
Alignment:
Q  11 cgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaatttt 63  Q
    |||||||||||| | |||||||||||| ||||||||||||| |||||||||||    
T  2357127 cgaaggtcttccatgccttggactggggcaccatcccctcaccctaaaatttt 2357075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 26690235 - 26690287
Alignment:
Q  11 cgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaatttt 63  Q
    |||||||||||||| |||||||||| | ||||||||||||| |||||||||||    
T  26690235 cgaaggtcttccctgccttggactgaggcaccatcccctcaccctaaaatttt 26690287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 21487219 - 21487282
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccat-cccctcaacctaaaatttt 63  Q
    |||||||||||||| ||||||||| |||| ||||||| |||||| ||||||| |||||||||||    
T  21487219 tctttgagcccgaaagtcttccctgccttagactggggcaccatccccctcatcctaaaatttt 21487282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 25987723 - 25987660
Alignment:
Q  1 tctttgagcccgaaggtctt-ccctaccttggactgggccaccatcccctcaacctaaaatttt 63  Q
    |||||||| ||||||||||| |||| |||||| ||||| ||||||||||||| |||||||||||    
T  25987723 tctttgagtccgaaggtctttccctgccttggtctggggcaccatcccctcaccctaaaatttt 25987660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 30372741 - 30372682
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaat 60  Q
    |||||||||||||||||||||| | ||||| ||||||  ||||| |||||| ||||||||    
T  30372741 tctttgagcccgaaggtcttccatgccttgaactggggtaccataccctcaccctaaaat 30372682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 5e-18; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 30054503 - 30054445
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaa 59  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||    
T  30054503 tctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaa 30054445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 22024174 - 22024235
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaattt 62  Q
    ||||||||||||||||||||| || |||||||||||| ||||||||||||| ||||||||||    
T  22024174 tctttgagcccgaaggtcttctctgccttggactggggcaccatcccctcaccctaaaattt 22024235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 12025254 - 12025314
Alignment:
Q  3 tttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaatttt 63  Q
    |||||||||||||||||||||| |||||||||||| ||||| ||||||| |||||||||||    
T  12025254 tttgagcccgaaggtcttccctgccttggactggggcaccaccccctcaccctaaaatttt 12025314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 17015192 - 17015252
Alignment:
Q  2 ctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaattt 62  Q
    ||||||||||||||||||||||| | |||||||||| ||||||||||||| ||||||||||    
T  17015192 ctttgagcccgaaggtcttccctgctttggactggggcaccatcccctcatcctaaaattt 17015252  T

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Target: chr1; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 30370121 - 30370061
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaatt 61  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||| | |||||||    
T  30370121 tctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccttaaaatt 30370061  T

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Target: chr1; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 4 - 63
Target Start/End: Original strand, 45324080 - 45324139
Alignment:
Q  4 ttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaatttt 63  Q
    ||||||||||||||||||||| | |||||||||| ||||||||||||| |||||||||||    
T  45324080 ttgagcccgaaggtcttccctgctttggactggggcaccatcccctcaccctaaaatttt 45324139  T

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Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 20014529 - 20014591
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaatttt 63  Q
    |||||||||| ||||||||||||| |||||||||| | ||||||||||||| |||||||||||    
T  20014529 tctttgagcctgaaggtcttccctgccttggactgaggcaccatcccctcaccctaaaatttt 20014591  T

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Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 21090186 - 21090236
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctca 51  Q
    |||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  21090186 tctttgagcccgaaggtcttccctgccttggactggggcaccatcccctca 21090236  T

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Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 14498140 - 14498078
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaatttt 63  Q
    |||||||| || |||||||||||| |||||||||||| | ||||||||||| |||||||||||    
T  14498140 tctttgagaccaaaggtcttccctgccttggactggggcgccatcccctcaccctaaaatttt 14498078  T

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Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 35371806 - 35371756
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctca 51  Q
    ||||||||||||||| |||||||| |||||||||||| |||||||||||||    
T  35371806 tctttgagcccgaagttcttccctgccttggactggggcaccatcccctca 35371756  T

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Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 30850901 - 30850841
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaatt 61  Q
    ||||||| |||||||||||| |||  ||||||||||| ||||||||||||| |||||||||    
T  30850901 tctttgaacccgaaggtctttcctgtcttggactggggcaccatcccctcaccctaaaatt 30850841  T

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Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 33762599 - 33762539
Alignment:
Q  3 tttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaatttt 63  Q
    |||||||||||| || |||||| |||||||||||| || |||||||||| |||||||||||    
T  33762599 tttgagcccgaaagttttccctgccttggactggggcatcatcccctcaccctaaaatttt 33762539  T

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Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 35618046 - 35618104
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaa 59  Q
    |||||||||||||||||||||| | | ||||||||||  |||||||||||| |||||||    
T  35618046 tctttgagcccgaaggtcttccttgctttggactggggtaccatcccctcaccctaaaa 35618104  T

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Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 33763313 - 33763254
Alignment:
Q  3 tttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaattt 62  Q
    |||||||||||| || |||||| ||||| |||||| || |||||||||| ||||||||||    
T  33763313 tttgagcccgaaagttttccctgccttgaactggggcatcatcccctcaccctaaaattt 33763254  T

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Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 4573450 - 4573512
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaatttt 63  Q
    ||||||||| ||||||||||||||   |||||||| | ||| ||||||||| |||||||||||    
T  4573450 tctttgagctcgaaggtcttccctgttttggactgaggcactatcccctcaccctaaaatttt 4573512  T

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Target: scaffold0021 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 107752 - 107691
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggccaccatcccctcaacctaaaatttt 63  Q
    ||||||||||||||||||| |||| |||||||||||| |||||||||||| ||||||||||||    
T  107752 tctttgagcccgaaggtctaccctgccttggactggggcaccatcccctc-acctaaaatttt 107691  T

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Target: scaffold0691 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 7030 - 6993
Alignment:
Q  1 tctttgagcccgaaggtcttccctaccttggactgggc 38  Q
    |||||||| |||||||||||||||||||||||||||||    
T  7030 tctttgagtccgaaggtcttccctaccttggactgggc 6993  T

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