View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5053_low_44 (Length: 217)
Name: NF5053_low_44
Description: NF5053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5053_low_44 |
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Alignment Details
Target: chr4 (Bit Score: 115; Significance: 1e-58; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 41883314 - 41883472
Alignment:
| Q |
1 |
tttcatattgttggctgatcctttttggatctgggccgtaatgcttagtatctcttctttgaaaattgatgttgacacattaaagaaggctacaacacac |
100 |
Q |
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| T |
41883314 |
tttcatattgttggccgatcctttttggatctgggccgtaatgtttagtatctcttctttgaaaattgatgttgacacattaaagaaggctacaatacac |
41883413 |
T |
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| Q |
101 |
tcttaaattactc---------ggtagttaagtgccgaaatcaaatttaatccataggc |
150 |
Q |
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| T |
41883414 |
tcttaaattactcaaatgcaagggtagttaagtgccgaaatcaaatttaatccataggc |
41883472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 159
Target Start/End: Complemental strand, 26933275 - 26933235
Alignment:
| Q |
119 |
ttaagtgccgaaatcaaatttaatccataggcacttaagtg |
159 |
Q |
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|||| |||||||||| |||||||||||| |||||||||||| |
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| T |
26933275 |
ttaactgccgaaatccaatttaatccatcggcacttaagtg |
26933235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 158
Target Start/End: Original strand, 50268510 - 50268555
Alignment:
| Q |
113 |
cggtagttaagtgccgaaatcaaatttaatccataggcacttaagt |
158 |
Q |
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| T |
50268510 |
cggtagttaactgccgaaatccaatttaatccatcggcacttaagt |
50268555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 159
Target Start/End: Original strand, 38632513 - 38632561
Alignment:
| Q |
111 |
ctcggtagttaagtgccgaaatcaaatttaatccataggcacttaagtg |
159 |
Q |
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| T |
38632513 |
ctcggtggttaacttccgaaatccaatttaatccatcggcacttaagtg |
38632561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 59 - 100
Target Start/End: Complemental strand, 16423860 - 16423819
Alignment:
| Q |
59 |
ttgaaaattgatgttgacacattaaagaaggctacaacacac |
100 |
Q |
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| T |
16423860 |
ttgaaaattgatgtagacacgttaaagaaggctaaaacacac |
16423819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 91
Target Start/End: Complemental strand, 4124759 - 4124723
Alignment:
| Q |
55 |
ttctttgaaaattgatgttgacacattaaagaaggct |
91 |
Q |
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| T |
4124759 |
ttctttgaaaattgttgttgacacattaaaaaaggct |
4124723 |
T |
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