View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5053_low_9 (Length: 419)

Name: NF5053_low_9
Description: NF5053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5053_low_9
NF5053_low_9
[»] chr7 (2 HSPs)
chr7 (17-402)||(22787696-22788079)
chr7 (145-185)||(40078664-40078704)
[»] chr5 (2 HSPs)
chr5 (147-196)||(35257333-35257382)
chr5 (147-179)||(27837133-27837165)
[»] chr8 (1 HSPs)
chr8 (145-227)||(26273981-26274063)
[»] chr1 (3 HSPs)
chr1 (145-236)||(43034330-43034416)
chr1 (145-209)||(42947853-42947917)
chr1 (147-183)||(15252194-15252230)
[»] chr4 (1 HSPs)
chr4 (162-225)||(37951616-37951679)
[»] chr3 (1 HSPs)
chr3 (146-185)||(1550449-1550488)
[»] chr2 (2 HSPs)
chr2 (357-398)||(18483675-18483716)
chr2 (145-185)||(26979543-26979583)


Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 17 - 402
Target Start/End: Original strand, 22787696 - 22788079
Alignment:
Q  17 caccatctgcatcaaacaatatataaatgcttaggaatgtaacgtttaatactaaagattcttagatagaaacatataagagcatttctatgagtagtta 116  Q
    |||||||||||||||| |||| ||||||| |||| ||||||||| ||||||| |||||||||||||||| |||||||||||||||||| |||||||| ||    
T  22787696 caccatctgcatcaaataatagataaatgtttagaaatgtaacgcttaataccaaagattcttagatagcaacatataagagcatttccatgagtagcta 22787795  T
Q  117 gtaaaaaagtttgatattataaccgtctatgatttgttatgtatgtgcatataatatcaactattgattcgattatcaactgttgatattacttacttta 216  Q
    ||||||||| |||||||| ||| | |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  22787796 gtaaaaaaggttgatattttaaacatctatgatctgttatgtatgtgcatataatatcaactattgattcgtttatcaactgttgatattacttacttta 22787895  T
Q  217 ctctttaaattaaattgttcttcactttagagaactatgatcagtcatggccgtcattctaatagttgaacccaggacctcaacaattataccaccgagc 316  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||| ||||||||||||||||||||||| |||||||||||||||    
T  22787896 ctctttaaattaaattgttcttcactttagagaactatgattagtcatggtcgtcgttctgatagttgaacccaggacctcaacgattataccaccgagc 22787995  T
Q  317 tcaaccactacgccatatgttttcagcgttgcacattttgcaacgctactagtatatatcaatattttacatgcataatatatata 402  Q
    ||||||||||||||  ||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||    
T  22787996 tcaaccactacgcc--atgttttcagcgttgcacatttcacaacgctactagtatatatctatattttacatgcataatatatata 22788079  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 185
Target Start/End: Complemental strand, 40078704 - 40078664
Alignment:
Q  145 atgatttgttatgtatgtgcatataatatcaactattgatt 185  Q
    ||||||||||||||||||| ||||||||||||| |||||||    
T  40078704 atgatttgttatgtatgtgtatataatatcaaccattgatt 40078664  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 196
Target Start/End: Original strand, 35257333 - 35257382
Alignment:
Q  147 gatttgttatgtatgtgcatataatatcaactattgattcgattatcaac 196  Q
    ||||||||||| ||||||||||||||||||||||||||| | ||||||||    
T  35257333 gatttgttatgcatgtgcatataatatcaactattgatttggttatcaac 35257382  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 179
Target Start/End: Original strand, 27837133 - 27837165
Alignment:
Q  147 gatttgttatgtatgtgcatataatatcaacta 179  Q
    ||||||||||| |||||||||||||||||||||    
T  27837133 gatttgttatgcatgtgcatataatatcaacta 27837165  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 145 - 227
Target Start/End: Complemental strand, 26274063 - 26273981
Alignment:
Q  145 atgatttgttatgtatgtgcatataatatcaactattgattcgattatcaactgttgatattacttactttactctttaaatt 227  Q
    ||||||||||||| ||| ||||||||||| ||| |||| || | |||||||| |||| |||||||   |||||||||||||||    
T  26274063 atgatttgttatgcatgcgcatataatattaaccattggtttgtttatcaacggttggtattactcgttttactctttaaatt 26273981  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 145 - 236
Target Start/End: Complemental strand, 43034416 - 43034330
Alignment:
Q  145 atgatttgttatgtatgtgcatataatatcaactattgattcgattatcaactgttgatattacttactttactctttaaattaaattgttc 236  Q
    ||||||||||||||  ||||||||||||||||   |||||| | |||  ||| |||||||||||| ||||||||||||||| | ||||||||    
T  43034416 atgatttgttatgt--gtgcatataatatcaa---ttgatttgtttaaaaacagttgatattactcactttactctttaaagtgaattgttc 43034330  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 209
Target Start/End: Original strand, 42947853 - 42947917
Alignment:
Q  145 atgatttgttatgtatgtgcatataatatcaactattgattcgattatcaactgttgatattact 209  Q
    |||||||||| |  || |||||||||||||||| ||||||| | |||||||| ||||||||||||    
T  42947853 atgatttgttttacatttgcatataatatcaaccattgatttgtttatcaacggttgatattact 42947917  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 183
Target Start/End: Complemental strand, 15252230 - 15252194
Alignment:
Q  147 gatttgttatgtatgtgcatataatatcaactattga 183  Q
    ||||||||||| |||| ||||||||||||||||||||    
T  15252230 gatttgttatgcatgtccatataatatcaactattga 15252194  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 162 - 225
Target Start/End: Original strand, 37951616 - 37951679
Alignment:
Q  162 tgcatataatatcaactattgattcgattatcaactgttgatattacttactttactctttaaa 225  Q
    |||||||| ||||||| | ||||| | |||||||| |||||||||||| |||||||||| ||||    
T  37951616 tgcatatattatcaaccagtgatttgtttatcaacagttgatattactcactttactctctaaa 37951679  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 146 - 185
Target Start/End: Original strand, 1550449 - 1550488
Alignment:
Q  146 tgatttgttatgtatgtgcatataatatcaactattgatt 185  Q
    |||||||||||| ||||||||||||||||||| |||||||    
T  1550449 tgatttgttatgcatgtgcatataatatcaaccattgatt 1550488  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 357 - 398
Target Start/End: Original strand, 18483675 - 18483716
Alignment:
Q  357 caacgctactagtatatatcaatattttacatgcataatata 398  Q
    |||||||| |||||||||| |||||||||||||||| |||||    
T  18483675 caacgctaatagtatatattaatattttacatgcattatata 18483716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 185
Target Start/End: Original strand, 26979543 - 26979583
Alignment:
Q  145 atgatttgttatgtatgtgcatataatatcaactattgatt 185  Q
    ||||||||||||| |||| |||||||||||||| |||||||    
T  26979543 atgatttgttatgcatgtacatataatatcaaccattgatt 26979583  T

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