View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5054-Insertion-10 (Length: 479)

Name: NF5054-Insertion-10
Description: NF5054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5054-Insertion-10
NF5054-Insertion-10
[»] chr8 (8 HSPs)
chr8 (8-464)||(898405-898863)
chr8 (359-462)||(14504071-14504174)
chr8 (21-96)||(5792224-5792299)
chr8 (359-453)||(15992105-15992199)
chr8 (21-96)||(11629576-11629651)
chr8 (21-96)||(34752619-34752694)
chr8 (317-368)||(45383632-45383683)
chr8 (374-462)||(36307743-36307831)
[»] chr5 (5 HSPs)
chr5 (189-372)||(27053438-27053620)
chr5 (369-464)||(27041424-27041519)
chr5 (332-462)||(42763605-42763735)
chr5 (346-405)||(19233911-19233970)
chr5 (359-462)||(22290726-22290829)
[»] chr4 (5 HSPs)
chr4 (296-462)||(17456272-17456438)
chr4 (359-462)||(30857712-30857815)
chr4 (359-462)||(55225962-55226065)
chr4 (347-464)||(12353479-12353596)
chr4 (353-390)||(48211868-48211905)
[»] chr2 (2 HSPs)
chr2 (332-462)||(27070688-27070818)
chr2 (333-450)||(20469503-20469620)
[»] chr3 (7 HSPs)
chr3 (297-462)||(8969994-8970159)
chr3 (359-462)||(6007722-6007825)
chr3 (299-462)||(14505583-14505746)
chr3 (359-462)||(17788502-17788605)
chr3 (344-464)||(49497713-49497833)
chr3 (299-464)||(2437896-2438061)
chr3 (325-462)||(34933464-34933601)
[»] chr6 (1 HSPs)
chr6 (325-464)||(15925141-15925280)
[»] chr1 (3 HSPs)
chr1 (353-462)||(2004259-2004368)
chr1 (374-462)||(38490608-38490696)
chr1 (348-453)||(45636283-45636388)
[»] chr7 (5 HSPs)
chr7 (325-462)||(5612517-5612654)
chr7 (269-405)||(22908342-22908478)
chr7 (346-394)||(40064906-40064954)
chr7 (332-423)||(9815894-9815985)
chr7 (332-423)||(10717819-10717910)
[»] scaffold0114 (1 HSPs)
scaffold0114 (325-464)||(13143-13282)


Alignment Details
Target: chr8 (Bit Score: 347; Significance: 0; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 8 - 464
Target Start/End: Complemental strand, 898863 - 898405
Alignment:
Q  8 tattccacgttaaccccatgtttttcataatgtatcaactcctttgtatcgactaattttaaatgaaatgaattaactttgcttttgctnnnnnnnnnng 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||          |    
T  898863 tattccacgttaaccccatgtttttcataatgtatcaactcctttgtatcggctaattttaaatgaaatgaattaactttgcttttgctaaaaaaaaa-g 898765  T
Q  108 tttttgtattgtcagattccataaataccaaaattaaagaatctacaatactttgctnnnnnnnn---tgtttttgtattgtcagtttgccgaagtctga 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||| ||||||||||||||    
T  898764 tttttgtattgtcagattccataaataccaaaattaaagaatctacaatactttgctaaaaaaaaaaatgtttttgtattgtcagattgccgaagtctga 898665  T
Q  205 aatttactatggtaggaatgtggataataatgtccaacaaatgattacatcaattatgggagtacaagttgttcttggaacagttaaatatttgggttta 304  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||| |||| ||||||| ||||||||    
T  898664 aatttactatggtaggaatgtggataataatgtccagcaaatgattacatcaattctgggagtacaagctgttcttggcacaggtaaatatctgggttta 898565  T
Q  305 ccttctatagtaggaagaaacaaacaagcaaccttcagctttattaaagatagagtttggcagaaaatcaattcctggagcagtaagtgtttatcaaaag 404  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  898564 ccttctatggtaggaagaaacaaacaagcaaccttcagctttattaaagatagagtttggcagaaaatcaattcctggagcagtaagtgtttaccaaaag 898465  T
Q  405 ctggtagagaagttatgataaagtatgttttgcaagccattccatcttacgttatgagca 464  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  898464 ctggtagagaagttatgataaagtatgttttgcaagccattccatcttacgttatgagca 898405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 359 - 462
Target Start/End: Original strand, 14504071 - 14504174
Alignment:
Q  359 gtttggcagaaaatcaattcctggagcagtaagtgtttatcaaaagctggtagagaagttatgataaagtatgttttgcaagccattccatcttacgtta 458  Q
    ||||||||||||||||||||||||||  |||||||| | || ||||| ||| |||| || |||||||| | ||||||||| || ||||| ||||| || |    
T  14504071 gtttggcagaaaatcaattcctggagtggtaagtgtctctctaaagcaggtcgagaggtcatgataaaatctgttttgcaggctattccttcttatgtga 14504170  T
Q  459 tgag 462  Q
    ||||    
T  14504171 tgag 14504174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 96
Target Start/End: Original strand, 5792224 - 5792299
Alignment:
Q  21 ccccatgtttttcataatgtatcaactcctttgtatcgactaattttaaatgaaatgaattaactttgcttttgct 96  Q
    |||||| |||||||||||||| |||||  |||||| | | ||||||| ||||||||||||||  ||||||||||||    
T  5792224 ccccatatttttcataatgtaccaacttgtttgtaccaattaattttgaatgaaatgaattagatttgcttttgct 5792299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 359 - 453
Target Start/End: Complemental strand, 15992199 - 15992105
Alignment:
Q  359 gtttggcagaaaatcaattcctggagcagtaagtgtttatcaaaagctggtagagaagttatgataaagtatgttttgcaagccattccatctta 453  Q
    ||||||||||||||||||||||||||  |||||||| | || ||||  ||| |||| || |||||||| | ||||||||| || ||||| |||||    
T  15992199 gtttggcagaaaatcaattcctggagttgtaagtgtctctctaaagtaggtcgagaggtcatgataaaatctgttttgcaggctattccttctta 15992105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 96
Target Start/End: Original strand, 11629576 - 11629651
Alignment:
Q  21 ccccatgtttttcataatgtatcaactcctttgtatcgactaattttaaatgaaatgaattaactttgcttttgct 96  Q
    |||||| | |||||| ||||| || || |||||||||   ||||||| ||||||||||||||||||||| ||||||    
T  11629576 ccccatatctttcatcatgtagcacctactttgtatccgttaatttttaatgaaatgaattaactttgcatttgct 11629651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 96
Target Start/End: Complemental strand, 34752694 - 34752619
Alignment:
Q  21 ccccatgtttttcataatgtatcaactcctttgtatcgactaattttaaatgaaatgaattaactttgcttttgct 96  Q
    |||||| | |||||| ||||| || || |||||||||   ||||||| ||||||||||||||||||||| ||||||    
T  34752694 ccccatatctttcatcatgtaacacctactttgtatccgttaatttttaatgaaatgaattaactttgcctttgct 34752619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 368
Target Start/End: Complemental strand, 45383683 - 45383632
Alignment:
Q  317 ggaagaaacaaacaagcaaccttcagctttattaaagatagagtttggcaga 368  Q
    |||||||| ||| |||| ||||||| |||||||||||||||||| |||||||    
T  45383683 ggaagaaataaaaaagctaccttcaactttattaaagatagagtatggcaga 45383632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 462
Target Start/End: Complemental strand, 36307831 - 36307743
Alignment:
Q  374 aattcctggagcagtaagtgtttatcaaaagctggtagagaagttatgataaagtatgttttgcaagccattccatcttacgttatgag 462  Q
    ||||| ||||| ||||||||| | || ||||| ||| | ||||||||||||||||  ||| | ||||||||||| || ||||| |||||    
T  36307831 aattcttggagtagtaagtgtctctctaaagcaggtcgggaagttatgataaagtcagttctccaagccattccttcctacgtcatgag 36307743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 96; Significance: 7e-47; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 189 - 372
Target Start/End: Complemental strand, 27053620 - 27053438
Alignment:
Q  189 gtttgccgaagtctgaaatttactatggtaggaatgtggataataatgtccaacaaatgattacatcaattatgggagtacaagttgttcttggaacagt 288  Q
    |||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||  |  ||||| |    |||||||  ||||     
T  27053620 gtttgccgaagtctgaaatttactgtagtaggaatgttgataataatgtccaacaaatgattacatcaatcctcagagtatatccagttcttgttacagg 27053521  T
Q  289 taaatatttgggtttaccttctatagtaggaagaaacaaacaagcaaccttcagctttattaaagatagagtttggcagaaaat 372  Q
    ||||||| ||||||| |||||||| |||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||    
T  27053520 taaatatctgggttt-ccttctatggtaggaaggaataaacaagcaaccttcagctttactaaagatagagtttggcagaaaat 27053438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 369 - 464
Target Start/End: Complemental strand, 27041519 - 27041424
Alignment:
Q  369 aaatcaattcctggagcagtaagtgtttatcaaaagctggtagagaagttatgataaagtatgttttgcaagccattccatcttacgttatgagca 464  Q
    |||| ||||| ||||||||||| ||| | ||||||||||||||||| |||||||| |||| |||||||||||||||||| ||||||||||||||||    
T  27041519 aaattaattcttggagcagtaaatgtctgtcaaaagctggtagagaggttatgattaagtctgttttgcaagccattccctcttacgttatgagca 27041424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 332 - 462
Target Start/End: Original strand, 42763605 - 42763735
Alignment:
Q  332 gcaaccttcagctttattaaagatagagtttggcagaaaatcaattcctggagcagtaagtgtttatcaaaagctggtagagaagttatgataaagtatg 431  Q
    ||||| ||||||||||| |||||||| |||||||| ||||||| |  |||||||||||| ||| |||| ||||| ||| |||| ||||||||||||| ||    
T  42763605 gcaactttcagctttatcaaagatagggtttggcaaaaaatcagtagctggagcagtaaatgtctatccaaagcaggtcgagaggttatgataaagtctg 42763704  T
Q  432 ttttgcaagccattccatcttacgttatgag 462  Q
    || | ||||| || || || || ||||||||    
T  42763705 ttcttcaagctatcccttcctatgttatgag 42763735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 346 - 405
Target Start/End: Original strand, 19233911 - 19233970
Alignment:
Q  346 tattaaagatagagtttggcagaaaatcaattcctggagcagtaagtgtttatcaaaagc 405  Q
    |||||||||| |||||||||||||||| ||||  ||||| |||||||||||||| |||||    
T  19233911 tattaaagatcgagtttggcagaaaataaattattggagtagtaagtgtttatctaaagc 19233970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 359 - 462
Target Start/End: Original strand, 22290726 - 22290829
Alignment:
Q  359 gtttggcagaaaatcaattcctggagcagtaagtgtttatcaaaagctggtagagaagttatgataaagtatgttttgcaagccattccatcttacgtta 458  Q
    |||||| |||||||||||||||||||  |||||||| | || ||||| ||| |||| || |||||||| | ||||||||| || ||||| ||||| || |    
T  22290726 gtttggtagaaaatcaattcctggagtggtaagtgtctctctaaagcaggtcgagaggtcatgataaaatctgttttgcaggctattccttcttatgtga 22290825  T
Q  459 tgag 462  Q
    ||||    
T  22290826 tgag 22290829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 296 - 462
Target Start/End: Original strand, 17456272 - 17456438
Alignment:
Q  296 ttgggtttaccttctatagtaggaagaaacaaacaagcaaccttcagctttattaaagatagagtttggcagaaaatcaattcctggagcagtaagtgtt 395  Q
    |||||||||||||| || |||||| | | |||| ||||||| ||||| || || || ||||  |||||||| ||||| | |  |||||| ||||| ||||    
T  17456272 ttgggtttaccttccatggtaggacgtagcaaaaaagcaactttcagtttcatcaaggataaggtttggcaaaaaataagtagctggagtagtaaatgtt 17456371  T
Q  396 tatcaaaagctggtagagaagttatgataaagtatgttttgcaagccattccatcttacgttatgag 462  Q
    |||| ||||| |||||||| |||||||| |||| |||||| ||||| || |||||||| ||||||||    
T  17456372 tatccaaagcaggtagagaggttatgatcaagtctgtttttcaagctatcccatcttatgttatgag 17456438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 359 - 462
Target Start/End: Original strand, 30857712 - 30857815
Alignment:
Q  359 gtttggcagaaaatcaattcctggagcagtaagtgtttatcaaaagctggtagagaagttatgataaagtatgttttgcaagccattccatcttacgtta 458  Q
    |||||||||| |||||||||||||||  |||||||| | || ||||| ||| |||| ||||||||||| | ||||||||| || ||||| ||||| || |    
T  30857712 gtttggcagagaatcaattcctggagtggtaagtgtctctctaaagcaggtcgagaggttatgataaaatctgttttgcaggctattccttcttatgtga 30857811  T
Q  459 tgag 462  Q
    ||||    
T  30857812 tgag 30857815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 359 - 462
Target Start/End: Original strand, 55225962 - 55226065
Alignment:
Q  359 gtttggcagaaaatcaattcctggagcagtaagtgtttatcaaaagctggtagagaagttatgataaagtatgttttgcaagccattccatcttacgtta 458  Q
    ||||||||||||||||||||||||||  |||||||| | || ||||| ||| |||| || |||||||| | ||||| ||| || ||||| ||||| || |    
T  55225962 gtttggcagaaaatcaattcctggagtggtaagtgtctctctaaagcaggtcgagaggtcatgataaaatctgtttggcaggctattccttcttatgtga 55226061  T
Q  459 tgag 462  Q
    ||||    
T  55226062 tgag 55226065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 347 - 464
Target Start/End: Original strand, 12353479 - 12353596
Alignment:
Q  347 attaaagatagagtttggcagaaaatcaattcctggagcagtaagtgtttatcaaaagctggtagagaagttatgataaagtatgttttgcaagccattc 446  Q
    |||||||| || || ||||| ||||||||||| ||||| ||||| ||||| || || || |   | || || |||||||||| |||||||||||| ||||    
T  12353479 attaaagacagggtgtggcaaaaaatcaattcgtggagtagtaaatgtttgtcgaaggcagagcgcgaggtcatgataaagtctgttttgcaagctattc 12353578  T
Q  447 catcttacgttatgagca 464  Q
    |||| ||||| |||||||    
T  12353579 catcgtacgtcatgagca 12353596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 390
Target Start/End: Original strand, 48211868 - 48211905
Alignment:
Q  353 gatagagtttggcagaaaatcaattcctggagcagtaa 390  Q
    |||||||||||| ||||||||||||| |||||||||||    
T  48211868 gatagagtttggaagaaaatcaattcgtggagcagtaa 48211905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 332 - 462
Target Start/End: Original strand, 27070688 - 27070818
Alignment:
Q  332 gcaaccttcagctttattaaagatagagtttggcagaaaatcaattcctggagcagtaagtgtttatcaaaagctggtagagaagttatgataaagtatg 431  Q
    ||||| ||||||||||| |||||||| |||||||| ||||||| |  |||||||||||| |||  ||| ||||| ||| |||| ||||||||||||| ||    
T  27070688 gcaactttcagctttatcaaagatagggtttggcaaaaaatcagtagctggagcagtaaatgtcaatccaaagcaggtcgagaggttatgataaagtctg 27070787  T
Q  432 ttttgcaagccattccatcttacgttatgag 462  Q
    || | ||||| || || || || ||||||||    
T  27070788 ttcttcaagctatcccttcctatgttatgag 27070818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 450
Target Start/End: Original strand, 20469503 - 20469620
Alignment:
Q  333 caaccttcagctttattaaagatagagtttggcagaaaatcaattcctggagcagtaagtgtttatcaaaagctggtagagaagttatgataaagtatgt 432  Q
    |||| ||||| ||||| |||||||| |||||||| |||||||    |||||||||||| ||  |||| ||||| ||| |||| |||||||| |||| |||    
T  20469503 caactttcagttttatcaaagatagggtttggcaaaaaatcagcagctggagcagtaaatgcctatccaaagcaggtcgagaggttatgatcaagtctgt 20469602  T
Q  433 tttgcaagccattccatc 450  Q
    | | ||||| || |||||    
T  20469603 tcttcaagctatcccatc 20469620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 297 - 462
Target Start/End: Complemental strand, 8970159 - 8969994
Alignment:
Q  297 tgggtttaccttctatagtaggaagaaacaaacaagcaaccttcagctttattaaagatagagtttggcagaaaatcaattcctggagcagtaagtgttt 396  Q
    ||||| |||| ||||| ||||||||||  ||| ||||||||||||  ||||||||||||||||| |||||||| || | |  |||||||||||| |||||    
T  8970159 tgggtctaccatctatggtaggaagaagtaaaaaagcaaccttcaagtttattaaagatagagtgtggcagaagattagtagctggagcagtaaatgttt 8970060  T
Q  397 atcaaaagctggtagagaagttatgataaagtatgttttgcaagccattccatcttacgttatgag 462  Q
     || ||||| || || || || ||||| || | |||| | ||| | |||||||| || ||||||||    
T  8970059 gtctaaagcaggaagggaggtcatgatcaaatctgttcttcaatctattccatcctatgttatgag 8969994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 359 - 462
Target Start/End: Complemental strand, 6007825 - 6007722
Alignment:
Q  359 gtttggcagaaaatcaattcctggagcagtaagtgtttatcaaaagctggtagagaagttatgataaagtatgttttgcaagccattccatcttacgtta 458  Q
    |||||||||| |||||||||||||||  |||||||| | || ||||| ||| |||| ||||||||||| | ||||||||| || ||||| ||||| || |    
T  6007825 gtttggcagagaatcaattcctggagtggtaagtgtctctctaaagcaggtcgagaggttatgataaaatctgttttgcaggctattccttcttatgtga 6007726  T
Q  459 tgag 462  Q
    ||||    
T  6007725 tgag 6007722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 299 - 462
Target Start/End: Complemental strand, 14505746 - 14505583
Alignment:
Q  299 ggtttaccttctatagtaggaagaaacaaacaagcaaccttcagctttattaaagatagagtttggcagaaaatcaattcctggagcagtaagtgtttat 398  Q
    ||||||||||| || ||| || | | |||| ||||||| ||||| ||||| || ||||| || ||||| ||||| | |   ||||||||||| ||||| |    
T  14505746 ggtttaccttcaattgtaagacgtagcaaaaaagcaactttcagttttatcaaggatagggtatggcaaaaaataagtatttggagcagtaaatgtttgt 14505647  T
Q  399 caaaagctggtagagaagttatgataaagtatgttttgcaagccattccatcttacgttatgag 462  Q
    | ||||| |||||||| |||||||| || | |||| | ||||| ||||||||||| ||||||||    
T  14505646 ccaaagcaggtagagaggttatgatcaaatttgttcttcaagctattccatcttatgttatgag 14505583  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 359 - 462
Target Start/End: Original strand, 17788502 - 17788605
Alignment:
Q  359 gtttggcagaaaatcaattcctggagcagtaagtgtttatcaaaagctggtagagaagttatgataaagtatgttttgcaagccattccatcttacgtta 458  Q
    ||||||||||||||||||||||||||  |||||||| | || ||||| ||| |||| || |||||||| | || |||||| || ||||| ||||| || |    
T  17788502 gtttggcagaaaatcaattcctggagtggtaagtgtctctctaaagcaggtcgagaggtcatgataaaatctgctttgcaggctattccttcttatgtga 17788601  T
Q  459 tgag 462  Q
    ||||    
T  17788602 tgag 17788605  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 344 - 464
Target Start/End: Original strand, 49497713 - 49497833
Alignment:
Q  344 tttattaaagatagagtttggcagaaaatcaattcctggagcagtaagtgtttatcaaaagctggtagagaagttatgataaagtatgttttgcaagcca 443  Q
    ||||| |||||| ||||||||||| |||| ||||| ||||| ||||| |||||||| || || ||  | || |||||||| || ||||| ||||| ||||    
T  49497713 tttatcaaagatcgagtttggcaggaaattaattcttggagtagtaaatgtttatctaaggcagggcgtgaggttatgattaaatatgtcttgcaggcca 49497812  T
Q  444 ttccatcttacgttatgagca 464  Q
    || | || || ||||||||||    
T  49497813 ttacttcgtatgttatgagca 49497833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 464
Target Start/End: Original strand, 2437896 - 2438061
Alignment:
Q  299 ggtttaccttctatagtaggaagaaacaaacaagcaaccttcagctttattaaagatagagtttggcagaaaatcaattcctggagcagtaagtgtttat 398  Q
    ||||||||||| || |||||  ||| |||| ||||||||||||| || ||||| || ||||| ||||| | ||||| |   ||||||||||| || || |    
T  2437896 ggtttaccttcaatggtagggcgaagcaaaaaagcaaccttcagtttcattaaggacagagtgtggcaaagaatcagtagttggagcagtaaatgcttgt 2437995  T
Q  399 caaaagctggtagagaagttatgataaagtatgttttgcaagccattccatcttacgttatgagca 464  Q
    | ||||||||||| || || ||||| || |  ||  | ||||| ||||||||||| || |||||||    
T  2437996 ctaaagctggtagggaggtcatgatcaaatcggtccttcaagctattccatcttatgtcatgagca 2438061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 462
Target Start/End: Original strand, 34933464 - 34933601
Alignment:
Q  325 caaacaagcaaccttcagctttattaaagatagagtttggcagaaaatcaattcctggagcagtaagtgtttatcaaaagctggtagagaagttatgata 424  Q
    |||| ||||||| |||| ||| || || |||||||| ||||| | ||||| |  |||||||||||| ||||| || ||||| || || || ||||||||     
T  34933464 caaaaaagcaactttcaacttcatcaaggatagagtgtggcaaagaatcagtagctggagcagtaaatgtttgtctaaagccgggagggaggttatgatc 34933563  T
Q  425 aagtatgttttgcaagccattccatcttacgttatgag 462  Q
    || | |||| | ||||| ||||||||||| || |||||    
T  34933564 aaatctgttcttcaagctattccatcttatgtcatgag 34933601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 325 - 464
Target Start/End: Complemental strand, 15925280 - 15925141
Alignment:
Q  325 caaacaagcaaccttcagctttattaaagatagagtttggcagaaaatcaattcctggagcagtaagtgtttatcaaaagctggtagagaagttatgata 424  Q
    |||| ||||||| |||||||| |||||||||||||| |||||||||||||     ||| |||  || ||||| || ||||| ||||| |||||||||||     
T  15925280 caaaaaagcaacattcagcttcattaaagatagagtgtggcagaaaatcagcaattggtgcaacaaatgtttgtccaaagcaggtagggaagttatgatc 15925181  T
Q  425 aagtatgttttgcaagccattccatcttacgttatgagca 464  Q
    || | |||| | ||||| ||||| ||||| ||||||||||    
T  15925180 aaatttgttcttcaagctattccgtcttatgttatgagca 15925141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 353 - 462
Target Start/End: Complemental strand, 2004368 - 2004259
Alignment:
Q  353 gatagagtttggcagaaaatcaattcctggagcagtaagtgtttatcaaaagctggtagagaagttatgataaagtatgttttgcaagccattccatctt 452  Q
    ||||||||||| |||||||| || || ||||||||||| |||||||  || || ||  ||||||||||||||||||  || ||||| || ||||||||||    
T  2004368 gatagagtttgacagaaaattaactcgtggagcagtaaatgtttattgaaggccggacgagaagttatgataaagtccgtcttgcaggctattccatctt 2004269  T
Q  453 acgttatgag 462  Q
    | || |||||    
T  2004268 atgtgatgag 2004259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 462
Target Start/End: Complemental strand, 38490696 - 38490608
Alignment:
Q  374 aattcctggagcagtaagtgtttatcaaaagctggtagagaagttatgataaagtatgttttgcaagccattccatcttacgttatgag 462  Q
    ||||| ||||| ||||||||| | || ||||| ||| | ||||||||||||||||  ||| | ||||||||||| |||||||| |||||    
T  38490696 aattcttggagtagtaagtgtctctctaaagcaggtcgggaagttatgataaagtcagttcttcaagccattccttcttacgtcatgag 38490608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 453
Target Start/End: Original strand, 45636283 - 45636388
Alignment:
Q  348 ttaaagatagagtttggcagaaaatcaattcctggagcagtaagtgtttatcaaaagctggtagagaagttatgataaagtatgttttgcaagccattcc 447  Q
    |||||||| | || ||||||||||||||| | |||||||| || ||  | || ||||| ||| | || ||||||||||| |  |||||||||||||||||    
T  45636283 ttaaagatcgcgtgtggcagaaaatcaatacttggagcagcaaatgcctctctaaagcgggtcgtgaggttatgataaaatccgttttgcaagccattcc 45636382  T
Q  448 atctta 453  Q
     |||||    
T  45636383 gtctta 45636388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 325 - 462
Target Start/End: Complemental strand, 5612654 - 5612517
Alignment:
Q  325 caaacaagcaaccttcagctttattaaagatagagtttggcagaaaatcaattcctggagcagtaagtgtttatcaaaagctggtagagaagttatgata 424  Q
    |||| ||||||| | |||||| || || |||||||||||||| ||||| | |   ||||| ||||| ||||| || ||||| |||||||| ||||||||     
T  5612654 caaaaaagcaacttccagcttcatcaaggatagagtttggcaaaaaataagtagttggagtagtaaatgtttgtccaaagcaggtagagaggttatgatc 5612555  T
Q  425 aagtatgttttgcaagccattccatcttacgttatgag 462  Q
    || | |||| | ||||| |||||||||||  |||||||    
T  5612554 aaatctgttcttcaagctattccatcttatattatgag 5612517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 405
Target Start/End: Original strand, 22908342 - 22908478
Alignment:
Q  269 caagttgttcttggaacagttaaatatttgggtttaccttctatagtaggaagaaacaaacaagcaaccttcagctttattaaagatagagtttggcaga 368  Q
    ||||||||||| || || |  |||||||||||  | ||||||||  ||||||| |  ||| || | || ||||||||||| ||||||||| ||||| |||    
T  22908342 caagttgttctaggtactggcaaatatttggggcttccttctatgataggaaggagaaaaaaatccactttcagctttatgaaagatagaatttggaaga 22908441  T
Q  369 aaatcaattcctggagcagtaagtgtttatcaaaagc 405  Q
    |  ||||||| ||||| |||||  |||||||||||||    
T  22908442 agttcaattcatggagtagtaaaagtttatcaaaagc 22908478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 346 - 394
Target Start/End: Complemental strand, 40064954 - 40064906
Alignment:
Q  346 tattaaagatagagtttggcagaaaatcaattcctggagcagtaagtgt 394  Q
    |||||| |||||||||||||| ||||||||||| ||||| |||||||||    
T  40064954 tattaaggatagagtttggcaaaaaatcaattcttggagtagtaagtgt 40064906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 332 - 423
Target Start/End: Complemental strand, 9815985 - 9815894
Alignment:
Q  332 gcaaccttcagctttattaaagatagagtttggcagaaaatcaattcctggagcagtaagtgtttatcaaaagctggtagagaagttatgat 423  Q
    ||||||||||| ||||| |||||| |  | | ||| |||||||||   |||||||| ||||||||||| |||||||| ||||| ||||||||    
T  9815985 gcaaccttcagatttatcaaagatcgtatatagcataaaatcaatagttggagcagcaagtgtttatctaaagctggcagagaggttatgat 9815894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 332 - 423
Target Start/End: Complemental strand, 10717910 - 10717819
Alignment:
Q  332 gcaaccttcagctttattaaagatagagtttggcagaaaatcaattcctggagcagtaagtgtttatcaaaagctggtagagaagttatgat 423  Q
    ||||||||||| ||||| |||||| |  | | ||| |||||||||   |||||||| ||||||||||| |||||||| ||||| ||||||||    
T  10717910 gcaaccttcagatttatcaaagatcgtatatagcataaaatcaatagttggagcagcaagtgtttatctaaagctggcagagaggttatgat 10717819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 464
Target Start/End: Complemental strand, 13282 - 13143
Alignment:
Q  325 caaacaagcaaccttcagctttattaaagatagagtttggcagaaaatcaattcctggagcagtaagtgtttatcaaaagctggtagagaagttatgata 424  Q
    |||| ||||||| ||||||||||| || |||||||| ||||| | ||| | |   |||||||| || ||||| || |||||||| || || ||||||||     
T  13282 caaaaaagcaactttcagctttatcaaggatagagtgtggcaaagaattagtagttggagcagcaaatgtttgtctaaagctgggagggaggttatgatc 13183  T
Q  425 aagtatgttttgcaagccattccatcttacgttatgagca 464  Q
    || | |||| | ||||| ||||||||||| || |||||||    
T  13182 aaatctgttcttcaagctattccatcttatgtcatgagca 13143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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