View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5054-Insertion-11 (Length: 471)
Name: NF5054-Insertion-11
Description: NF5054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5054-Insertion-11 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-113; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 8 - 227
Target Start/End: Complemental strand, 27846306 - 27846087
Alignment:
| Q |
8 |
gttatggcccaagtgaattaatagatcttcttctagcaagaccaaacgagctatgtcctacattaataaagacactaacaaattaagaaaattcagcata |
107 |
Q |
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| T |
27846306 |
gttatggcccaagtgaattaatagatcttcttctagcaagaccaaacgagctatgtcctacactaataaagacactaacaaattaagaaaattcagcaga |
27846207 |
T |
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| Q |
108 |
atttaattctcaactatgactccataactaaagcaataaaaacaaatagataggtaaggggaagttgtgacatttttccaattatgcaaatagataatca |
207 |
Q |
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| T |
27846206 |
atttaattctcaactatgactccataactaaagcaataaaaacaaatagataggtaaggggaagttgtgacatttttccaattatgcaaataaataatca |
27846107 |
T |
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| Q |
208 |
tatattgccaactacatttg |
227 |
Q |
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| T |
27846106 |
tatattgccaactacatttg |
27846087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 293 - 471
Target Start/End: Complemental strand, 27846018 - 27845840
Alignment:
| Q |
293 |
taagtagttagagtcattggttaataaatttagttaaaaatgaatcaattcagagaatcagaattcaaattctgattgaaacaatcatggatcacatttt |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
27846018 |
taagtagttagagtcattggttaataaatttagttaaaaatgaatcaattcaaagaatcagaatttaaattttgattgaaacaatcatggatcacatttt |
27845919 |
T |
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| Q |
393 |
gtttctccgatcgaacttcaaaatactaagataannnnnnnctaagagatcatatgatcgattgtttctcatcttatgg |
471 |
Q |
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| T |
27845918 |
gtttctccgatcgaacttcaaaatactaagataacttttttctaagagatcatatgatcgattgtttctcatcttatgg |
27845840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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