View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5054-Insertion-12 (Length: 416)
Name: NF5054-Insertion-12
Description: NF5054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5054-Insertion-12 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 391; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 6 - 416
Target Start/End: Original strand, 12326174 - 12326584
Alignment:
| Q |
6 |
caacattgttgttatagtcagccctctccagctcctgcgcaacagcaagtaaagtaggaaacaaggaaggttcgactttgtaccgttccacattagaaac |
105 |
Q |
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| T |
12326174 |
caacattgttgttatagtcagccctctccagctcctgcgcaacagcaagtaaagtaggaaacaaggaaggttcaactttgtaccgttccacattcgaaac |
12326273 |
T |
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| Q |
106 |
catacacatgaaaaactgagggtaaggatgctgcgtaacttttgtaatggccgcctctaaattttccacctctcttgaaactctagggtcttctaggaca |
205 |
Q |
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| T |
12326274 |
catacacatgaaaaactgagggtaaggatgctgcataacttttgtaatggccgcctctaaattttccacctctcttgaaactctagggtcttctaggaca |
12326373 |
T |
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| Q |
206 |
ggagatttaggcataatcaaaaaattattcatgaggaccaaatgtcgcatatcaacccaagctaacagattccccaaataatgacaaataggaccaattc |
305 |
Q |
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| T |
12326374 |
ggagatttaggcataatcaaaaaattattcatgaggaccaaatgtcgcatatcaacccaagctaacagattccccaaataatgacaaataggaccaattg |
12326473 |
T |
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| Q |
306 |
ctgaattttcgcaattcatgtacttgaaaagaaatttaattgcttccttgcaaagcaaggaacaaccaccaatcatagttctaatagcagtagctttatt |
405 |
Q |
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| T |
12326474 |
ctgaactttcgcaattcatgtacttgaaaagaaatttaattgcttccttgcaaagcaaggaacaaccaccaatcatagttctaatagcagtagctttatt |
12326573 |
T |
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| Q |
406 |
ataatcaaatg |
416 |
Q |
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| T |
12326574 |
ataatcaaatg |
12326584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 274 - 416
Target Start/End: Complemental strand, 12361676 - 12361533
Alignment:
| Q |
274 |
attccccaaataatgacaaataggaccaattcctgaattttcgcaattcatgtacttgaaaagaaatttaattgcttccttgcaaagcaaggaac-aacc |
372 |
Q |
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| T |
12361676 |
attccccaaatattgacaaacagaaccaattcctgaattttggcaattgatttgcatcaatagaaaaataattgcatccttgcatagtattgaacaaagc |
12361577 |
T |
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| Q |
373 |
accaatcatagttctaatagcagtagctttattataatcaaatg |
416 |
Q |
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| T |
12361576 |
accaagcatagttctaaatgcattaactttcttaaaatcaaatg |
12361533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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