View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5054-Insertion-16 (Length: 263)
Name: NF5054-Insertion-16
Description: NF5054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5054-Insertion-16 |
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Alignment Details
Target: chr3 (Bit Score: 113; Significance: 3e-57; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 8 - 132
Target Start/End: Complemental strand, 45652895 - 45652771
Alignment:
| Q |
8 |
gaaagttggaaagaacacaaaaaaccatctttttatggccatgtgttgggatactagagttgaaattgaggttgggagaataaacaccaagttccttgtt |
107 |
Q |
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| T |
45652895 |
gaaagttggaaagaacacaaaaaaccatctttttatggccatgtgttgggatactagagttgaaattgaggttgagagaataaacaccaagttccttgtt |
45652796 |
T |
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| Q |
108 |
caatagaactggtgttgtgcgaatt |
132 |
Q |
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| T |
45652795 |
caatagaactggcgttgtgtgaatt |
45652771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 109 - 263
Target Start/End: Complemental strand, 45652757 - 45652604
Alignment:
| Q |
109 |
aatagaactggtgttgtgcgaattgaatnnnnnnnntgaaagttttacattgaacacacatgtatgaataaagtgattatctgcgaaaatacatatgtca |
208 |
Q |
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| T |
45652757 |
aatagaactggtgttgtgtgaattgaataaaaaaa-tgaaagttttacattgaacacacatgtatgaataaagtgattactcgcgaaaatacatatgtca |
45652659 |
T |
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| Q |
209 |
cttgcacaccattatcggccgaactttgggcttgggctaaatgatattcatctgt |
263 |
Q |
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| T |
45652658 |
cttgcacaccattatcggccgaactttgggcttgggctaaatgatattcatctgt |
45652604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 45645166 - 45645080
Alignment:
| Q |
8 |
gaaagttggaaagaacacaaaaaaccatctttttatggccatgtgttgggatactagagttgaaatt-gaggttgggagaataaaca |
93 |
Q |
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| T |
45645166 |
gaaatttgaaaagaacagagataaccatctttctatggccatttgttgaaacactagagttgaaattggaagttggaagaataaaca |
45645080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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