View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5054-Insertion-3 (Length: 906)

Name: NF5054-Insertion-3
Description: NF5054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5054-Insertion-3
NF5054-Insertion-3
[»] chr1 (20 HSPs)
chr1 (8-903)||(43989608-43990504)
chr1 (258-394)||(37473269-37473402)
chr1 (223-333)||(27976523-27976630)
chr1 (259-394)||(41195261-41195394)
chr1 (683-751)||(42415955-42416023)
chr1 (266-394)||(14331659-14331784)
chr1 (117-187)||(38001663-38001733)
chr1 (117-193)||(2295158-2295234)
chr1 (140-196)||(37769627-37769683)
chr1 (244-340)||(44931989-44932081)
chr1 (256-394)||(14576718-14576853)
chr1 (340-392)||(33541854-33541906)
chr1 (689-772)||(43918156-43918237)
chr1 (29-76)||(42415559-42415606)
chr1 (13-92)||(43902655-43902733)
chr1 (240-332)||(37769712-37769801)
chr1 (212-283)||(3234040-3234107)
chr1 (117-186)||(6102223-6102291)
chr1 (257-318)||(24915117-24915178)
chr1 (212-257)||(42174856-42174900)
[»] chr3 (11 HSPs)
chr3 (210-394)||(20880347-20880523)
chr3 (221-393)||(30956659-30956825)
chr3 (221-393)||(30972471-30972637)
chr3 (264-393)||(35959529-35959655)
chr3 (221-384)||(12862281-12862437)
chr3 (118-190)||(402475-402547)
chr3 (303-376)||(28795944-28796014)
chr3 (322-394)||(29002961-29003030)
chr3 (117-186)||(28881691-28881760)
chr3 (117-190)||(34610738-34610811)
chr3 (272-333)||(46778308-46778369)
[»] chr5 (14 HSPs)
chr5 (683-774)||(8831177-8831268)
chr5 (209-393)||(32372495-32372673)
chr5 (117-193)||(10640015-10640091)
chr5 (209-392)||(7319030-7319209)
chr5 (117-190)||(41419384-41419457)
chr5 (265-324)||(35445992-35446051)
chr5 (117-187)||(41534506-41534576)
chr5 (117-193)||(3520639-3520715)
chr5 (97-193)||(7705914-7706006)
chr5 (264-365)||(3932758-3932860)
chr5 (340-394)||(9202884-9202938)
chr5 (144-193)||(16457938-16457987)
chr5 (340-393)||(24030548-24030601)
chr5 (212-343)||(29925759-29925886)
[»] chr8 (16 HSPs)
chr8 (117-394)||(1058009-1058274)
chr8 (257-332)||(10758322-10758397)
chr8 (304-390)||(9130423-9130506)
chr8 (129-193)||(40981166-40981230)
chr8 (117-189)||(11376768-11376841)
chr8 (302-393)||(14956406-14956494)
chr8 (97-167)||(38602415-38602481)
chr8 (117-193)||(35534545-35534621)
chr8 (257-332)||(12497297-12497372)
chr8 (209-333)||(12976141-12976260)
chr8 (139-193)||(26771327-26771381)
chr8 (139-189)||(27754469-27754519)
chr8 (340-394)||(40981000-40981054)
chr8 (117-179)||(43717866-43717928)
chr8 (129-190)||(1930100-1930161)
chr8 (297-338)||(11861730-11861771)
[»] chr2 (14 HSPs)
chr2 (224-394)||(41407171-41407336)
chr2 (272-394)||(15757740-15757866)
chr2 (264-332)||(41812163-41812231)
chr2 (257-333)||(42659217-42659293)
chr2 (212-333)||(32592515-32592631)
chr2 (117-190)||(4606990-4607063)
chr2 (148-193)||(41812055-41812100)
chr2 (117-193)||(42419855-42419931)
chr2 (209-375)||(33319834-33319994)
chr2 (117-189)||(42659143-42659215)
chr2 (144-191)||(41293122-41293169)
chr2 (344-394)||(5745560-5745610)
chr2 (147-193)||(11863963-11864009)
chr2 (117-191)||(13325634-13325708)
[»] chr6 (10 HSPs)
chr6 (229-333)||(24626223-24626324)
chr6 (350-393)||(9604741-9604784)
chr6 (272-376)||(18076084-18076185)
chr6 (354-394)||(6538387-6538427)
chr6 (129-193)||(24982767-24982831)
chr6 (221-282)||(8201212-8201270)
chr6 (131-189)||(20368127-20368185)
chr6 (340-394)||(35069432-35069486)
chr6 (264-333)||(30536406-30536475)
chr6 (117-190)||(34910341-34910414)
[»] chr4 (12 HSPs)
chr4 (117-193)||(17822797-17822873)
chr4 (707-774)||(45094744-45094813)
chr4 (212-335)||(54069442-54069561)
chr4 (117-193)||(24169325-24169401)
chr4 (139-333)||(22030132-22030319)
chr4 (272-393)||(43505829-43505945)
chr4 (117-193)||(25904155-25904231)
chr4 (276-332)||(31851383-31851439)
chr4 (264-340)||(41336682-41336757)
chr4 (97-193)||(42403939-42404030)
chr4 (340-393)||(44863098-44863151)
chr4 (221-332)||(50681122-50681230)
[»] chr7 (12 HSPs)
chr7 (209-318)||(40252129-40252234)
chr7 (264-333)||(46078075-46078144)
chr7 (117-193)||(19302495-19302571)
chr7 (281-394)||(5947031-5947137)
chr7 (257-335)||(33266550-33266628)
chr7 (340-394)||(38500064-38500118)
chr7 (117-193)||(5947303-5947379)
chr7 (117-193)||(20526508-20526584)
chr7 (297-395)||(21568734-21568829)
chr7 (354-394)||(45004636-45004676)
chr7 (302-394)||(9210498-9210587)
chr7 (117-189)||(41040230-41040303)


Alignment Details
Target: chr1 (Bit Score: 785; Significance: 0; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 785; E-Value: 0
Query Start/End: Original strand, 8 - 903
Target Start/End: Complemental strand, 43990504 - 43989608
Alignment:
Q  8 atgtatatgtatgcttaaacatctatgcatgcccttctcattacaactaaaaattatcaacatcacaatcaatttgtttgaaaaaactagcctgtttgga 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43990504 atgtatatgtatgcttaaacatctatgcatgcccttctcattacaactaaaaattatcaacatcacaatcaatttgtttgaaaaaactagcctgtttgga 43990405  T
Q  108 ttgacttaattatttgagttcatctactgatataaattttgtgaggctatttgggagaacgtttgaaaacagcttatgacattttttcacaatannnnnn 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  43990404 ttgacttaattatttgagttcatctactgatataaattttgtgaggctatttgggagaacgtttgaaaacagcttatgacattttttcacaatatttttt 43990305  T
Q  208 ncagcttattttgcataagttctccaagatgacttataaaaacaacttattataggatatacataaacaatttaactttgttttatcacttgccataaaa 307  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43990304 tcagcttattttgcataagttctccaagatgacttataaaaacaacttattataggatatacataaacaatttaactttgttttatcacttgccataaaa 43990205  T
Q  308 atagtttatgtgagcttatacataagtgtttattatcatgacaaacgcttgtgctataaactgcaaatacgctatttatccaaacagactcggtctttat 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43990204 atagtttatgtgagcttatacataagtgtttattatcatgacaaacgcttgtgctataaactgcaaatacgctatttatccaaacagactcggtctttat 43990105  T
Q  408 gtgttgcttcatacatgtaatcactgtgacaatggattatgtgcttgacagcaatactacataattgttttcttttttaacaggttaattaatattatat 507  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  43990104 gtgttgcttcatacatgtaatcactgtgacaatggattatgtgcttgacagcaatattacataattgttttcttttttaacaggttaattaatattatat 43990005  T
Q  508 agtggttaaaaatatctagataaagaatgatatttgattccttaccctggataaggtttggtctcaatttgaatatgacaatatttgatcttgtagctgg 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43990004 agtggttaaaaatatctagataaagaatgatatttgattccttaccctggataaggtttggtctcaatttgaatatgacaatatttgatcttgtagctgg 43989905  T
Q  608 agagcaaattgggtgtgtgatgttannnnnnnnnnnnnnnnnnnnnnnnngccttgatgatggttttactatagttgcttctggttagttatcgacttct 707  Q
    |||||||||||||||||||||||||                         ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43989904 agagcaaattgggtgtgtgatgttatttttattttttattttgtgtttttgccttgatgatggttttactatagttgcttctggttagttatcgacttct 43989805  T
Q  708 tgtgtctgcaaagattactggctgctgctttttgtaatagactgcttcttaattacttgctggtagtgagtgacgtcgacccagatgatgaattcattga 807  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43989804 tgtgtctgcaaagattactggctgctgctttttgtaatagactgcttcttaattacttgctggtagtgagtgacgtcgacccagatgatgaattcattga 43989705  T
Q  808 acctgacaaaccaactcaactggtaaattacctgttgtttattagttcgagtcaaaaccaaatccaaactgtcaagaacc-aagacaataggttcag 903  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  43989704 acctgacaaaccaactcaactggtaaattacctgttgtttattagttcgagtcaaaaccaaatccaaactgtcaagaaccaaaaacaataggttcag 43989608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 258 - 394
Target Start/End: Complemental strand, 37473402 - 37473269
Alignment:
Q  258 tataggatatacataaacaatttaactttgttttatcacttgccataaaaatagtttatgtgagcttatacataagtgtttattatcatgacaaacgctt 357  Q
    ||||| |||||||||||| | ||||||||||||||||| |||| |||||||||| |||||| ||||||||||||||||    || |||||| ||   |||    
T  37473402 tatagcatatacataaacgacttaactttgttttatcatttgctataaaaatagcttatgtaagcttatacataagtg---cttgtcatgataagaactt 37473306  T
Q  358 gtgctataaactgcaaatacgctatttatccaaacag 394  Q
    |||| |||| ||||||||| | | |||||||||||||    
T  37473305 gtgcaataagctgcaaataagttgtttatccaaacag 37473269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 223 - 333
Target Start/End: Complemental strand, 27976630 - 27976523
Alignment:
Q  223 taagttctccaagatgacttataaaaacaacttattataggatatacataaacaatttaactttgttttatcacttgccataaaaatagtttatgtgagc 322  Q
    ||||||||| |||||  ||||| ||||||||||||   || ||||||| ||||||||||||||||||  |||| |||| |||||||||| |||||| |||    
T  27976630 taagttctcgaagatagcttatgaaaacaacttat---agcatatacaaaaacaatttaactttgttcaatcatttgctataaaaatagcttatgtaagc 27976534  T
Q  323 ttatacataag 333  Q
    |||||||||||    
T  27976533 ttatacataag 27976523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 259 - 394
Target Start/End: Original strand, 41195261 - 41195394
Alignment:
Q  259 ataggatatacataaacaatttaactttgtt-ttatcacttgccataaaaatagtttatgtgagcttatacataagtgtttattatcatgacaaacgctt 357  Q
    |||| ||||||| ||||| |||||||||  | |||||| || | ||||||||||||||||| | |||||||||||| |   ||||||| || || |||||    
T  41195261 atagtatatacaaaaacagtttaacttttatgttatcatttactataaaaatagtttatgtaaacttatacataagcg---attatcaggataagcgctt 41195357  T
Q  358 gtgctataaactgcaaatacgctatttatccaaacag 394  Q
    ||||||||| ||||||||| | |||||||||||||||    
T  41195358 gtgctataagctgcaaataagttatttatccaaacag 41195394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 683 - 751
Target Start/End: Original strand, 42415955 - 42416023
Alignment:
Q  683 tgcttctggttagttatcgacttcttgtgtctgcaaagattactggctgctgctttttgtaatagactg 751  Q
    ||||||| |||| |||||||||| |  |||||||||||| |||||||||||||||||||||||||||||    
T  42415955 tgcttctagttaattatcgacttgtcatgtctgcaaagactactggctgctgctttttgtaatagactg 42416023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 266 - 394
Target Start/End: Complemental strand, 14331784 - 14331659
Alignment:
Q  266 atacataaacaatttaactttgttttatcacttgccataaaaatagtttatgtgagcttatacataagtgtttattatcatgacaaacgcttgtgctata 365  Q
    ||||| ||||||||||||||| |||||||   | |  || |||||| |||||| |||||||||||||||| ||||   ||||| || |||||||||||||    
T  14331784 atacaaaaacaatttaactttattttatcttgttctgtagaaatagcttatgttagcttatacataagtgcttat---catgagaagcgcttgtgctata 14331688  T
Q  366 aactgcaaatacgctatttatccaaacag 394  Q
    | || |||||| ||| |||||| ||||||    
T  14331687 agcttcaaataagctgtttatctaaacag 14331659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 187
Target Start/End: Complemental strand, 38001733 - 38001663
Alignment:
Q  117 ttatttgagttcatctactgatataaattttgtgaggctatttgggagaacgtttgaaaacagcttatgac 187  Q
    ||||||||||| ||| ||||| |||| ||||||||| || ||||||||||| | |||||||||||||||||    
T  38001733 ttatttgagtttatcaactgacataagttttgtgagactgtttgggagaacttatgaaaacagcttatgac 38001663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 193
Target Start/End: Complemental strand, 2295234 - 2295158
Alignment:
Q  117 ttatttgagttcatctactgatataaattttgtgaggctatttgggagaacgtttgaaaacagcttatgacattttt 193  Q
    ||||||||| | ||||||||  |||| ||||||||| || ||||||||||| | |||||||||||||||||| ||||    
T  2295234 ttatttgagcttatctactggcataagttttgtgagactgtttgggagaacttatgaaaacagcttatgacaatttt 2295158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 196
Target Start/End: Original strand, 37769627 - 37769683
Alignment:
Q  140 taaattttgtgaggctatttgggagaacgtttgaaaacagcttatgacattttttca 196  Q
    ||||||||||||| || ||||| | ||| ||||||||||||||||||||||||||||    
T  37769627 taaattttgtgagactgtttggcaaaacctttgaaaacagcttatgacattttttca 37769683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 244 - 340
Target Start/End: Original strand, 44931989 - 44932081
Alignment:
Q  244 taaaaacaacttattataggatatacataaacaatttaactttgttttatcacttgccataaaaatagtttatgtgagcttatacataagtgtttat 340  Q
    |||||||||||||| |||| ||||||| |||||||||||||   |||||||  |||| ||||| ||||||||||  ||||||||| |||||| ||||    
T  44931989 taaaaacaacttat-atagcatatacaaaaacaatttaact---ttttatcttttgctataaatatagtttatgcaagcttatacctaagtgcttat 44932081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 256 - 394
Target Start/End: Original strand, 14576718 - 14576853
Alignment:
Q  256 attataggatatacataaacaatttaactttgttttatcacttgccataaaaatagtttatgtgagcttatacataagtgtttattatcatgacaaacgc 355  Q
    ||||||| ||||||| ||||||||||||||| |||||||  || | ||  |||||| |||  |||||||||| |||||||    ||||||||| ||  ||    
T  14576718 attatagcatatacaaaaacaatttaactttattttatcctttactatggaaatagcttacatgagcttataaataagtg---cttatcatgataagagc 14576814  T
Q  356 ttgtgctataaactgcaaatacgctatttatccaaacag 394  Q
    ||||||||||| ||| ||||| | | ||||||| |||||    
T  14576815 ttgtgctataagctggaaataagatgtttatcccaacag 14576853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 340 - 392
Target Start/End: Original strand, 33541854 - 33541906
Alignment:
Q  340 ttatcatgacaaacgcttgtgctataaactgcaaatacgctatttatccaaac 392  Q
    ||||||||| |||| |||||||||||||||||||||| | | |||||||||||    
T  33541854 ttatcatgataaacacttgtgctataaactgcaaataagttgtttatccaaac 33541906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 689 - 772
Target Start/End: Original strand, 43918156 - 43918237
Alignment:
Q  689 tggttagttatcgacttcttgtgtctgcaaagattactggctgctgctttttgtaatagactgcttcttaattacttgctggta 772  Q
    |||||||||||||||||||||||||||||| ||| |   |||    ||| |||||| |||||||||| ||||||||||||||||    
T  43918156 tggttagttatcgacttcttgtgtctgcaatgatga--agctcagacttcttgtaaaagactgcttcataattacttgctggta 43918237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 76
Target Start/End: Original strand, 42415559 - 42415606
Alignment:
Q  29 tctatgcatgcccttctcattacaactaaaaattatcaacatcacaat 76  Q
    |||||| ||||| |||||||||||| || |||||||||||||||||||    
T  42415559 tctatgtatgcctttctcattacaattacaaattatcaacatcacaat 42415606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 92
Target Start/End: Original strand, 43902655 - 43902733
Alignment:
Q  13 tatgtatgcttaaacatctatgcatgcccttctcattacaactaaaaattatcaacatcacaatcaatttgtttgaaaaa 92  Q
    |||||||||||||  ||||||| ||  | |||||||||||| || ||||||||||| ||| |||||||||||| ||||||    
T  43902655 tatgtatgcttaacaatctatgtatatctttctcattacaattacaaattatcaacttca-aatcaatttgttggaaaaa 43902733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 240 - 332
Target Start/End: Original strand, 37769712 - 37769801
Alignment:
Q  240 cttataaaaacaacttattataggatatacataaacaatttaactttgttttatcacttgccataaaaatagtttatgtgagcttatacataa 332  Q
    |||||||||||||||| |   || ||| ||| ||| ||||||||||| |||||||| |||| ||||||||| ||||||| |  ||||||||||    
T  37769712 cttataaaaacaacttgt---agcataaacaaaaataatttaactttattttatcatttgctataaaaataatttatgtaaatttatacataa 37769801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 283
Target Start/End: Original strand, 3234040 - 3234107
Alignment:
Q  212 cttattttgcataagttctccaagatgacttataaaaacaacttattataggatatacataaacaatttaac 283  Q
    |||||||| |||||||||||||| ||  ||||||||||||||   |||||| ||||||| ||||||||||||    
T  3234040 cttatttt-cataagttctccaatatagcttataaaaacaac---ttatagcatatacaaaaacaatttaac 3234107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 186
Target Start/End: Complemental strand, 6102291 - 6102223
Alignment:
Q  117 ttatttgagttcatctactgatataaattttgtgaggctatttgggagaacgtttgaaaacagcttatga 186  Q
    ||||||||||| |||||| |  ||||||||||||||  | ||||||||||| | ||||||||||||||||    
T  6102291 ttatttgagtttatctaccggcataaattttgtgagattgtttgggagaac-tatgaaaacagcttatga 6102223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 257 - 318
Target Start/End: Original strand, 24915117 - 24915178
Alignment:
Q  257 ttataggatatacataaacaatttaactttgttttatcacttgccataaaaatagtttatgt 318  Q
    |||||| ||||||| ||||||||||||||| |||||||   ||| ||| |||||||||||||    
T  24915117 ttatagcatatacaaaaacaatttaactttattttatcttctgctatagaaatagtttatgt 24915178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 257
Target Start/End: Complemental strand, 42174900 - 42174856
Alignment:
Q  212 cttattttgcataagttctccaagatgacttataaaaacaacttat 257  Q
    |||||||| |||||||||||||| || |||||||||||||||||||    
T  42174900 cttatttt-cataagttctccaatataacttataaaaacaacttat 42174856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 3e-23; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 210 - 394
Target Start/End: Complemental strand, 20880523 - 20880347
Alignment:
Q  210 agcttattttgcataagttctccaagatgacttataaaaacaacttattataggatatacataaacaatttaactttgttttatcacttgccataaaaat 309  Q
    |||||||||| |||||||||||||| ||  ||| ||||||||  ||||   || ||||||| |||||||||||||| ||||||||| |||| ||||||||    
T  20880523 agcttatttt-cataagttctccaatatagcttttaaaaacagtttat---agcatatacaaaaacaatttaactt-gttttatcatttgctataaaaat 20880429  T
Q  310 agtttatgtgagcttatacataagtgtttattatcatgacaaacgcttgtgctataaactgcaaatacgctatttatccaaacag 394  Q
    || |||||| ||||||||||||||   |||||   |||| || |||||||||||||||||||||||| | | | |||||||||||    
T  20880428 agcttatgtaagcttatacataagcacttatt---atgataaccgcttgtgctataaactgcaaataagttgtctatccaaacag 20880347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 221 - 393
Target Start/End: Original strand, 30956659 - 30956825
Alignment:
Q  221 cataagttctccaagatgacttataaaaacaacttattataggatatacataaacaatttaactttgttttatcacttgccataaaaatagtttatgtga 320  Q
    |||||||||||||||||  ||| | ||||||||||||   ||  |||||| ||||||||||||||| |||||||  |||| ||| |||||| |||||| |    
T  30956659 cataagttctccaagatagcttttgaaaacaacttat---agcctatacaaaaacaatttaactttattttatcttttgctatagaaatagcttatgtaa 30956755  T
Q  321 gcttatacataagtgtttattatcatgacaaacgcttgtgctataaactgcaaatacgctatttatccaaaca 393  Q
    |||||| ||||| ||    ||||||||| || | |||||||||||| ||||||||| ||| ||||||||||||    
T  30956756 gcttatgcataaatg---cttatcatgataagcccttgtgctataagctgcaaataagctgtttatccaaaca 30956825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 221 - 393
Target Start/End: Original strand, 30972471 - 30972637
Alignment:
Q  221 cataagttctccaagatgacttataaaaacaacttattataggatatacataaacaatttaactttgttttatcacttgccataaaaatagtttatgtga 320  Q
    |||||||||||||||||  ||| | ||||||||||||   ||  |||||| ||||||||||||||| |||||||  |||| ||| |||||| |||||| |    
T  30972471 cataagttctccaagatagcttttgaaaacaacttat---agcctatacaaaaacaatttaactttattttatcttttgctatagaaatagcttatgtaa 30972567  T
Q  321 gcttatacataagtgtttattatcatgacaaacgcttgtgctataaactgcaaatacgctatttatccaaaca 393  Q
    |||||| ||||| ||    ||||||||| || | |||||||||||| ||||||||| ||| ||||||||||||    
T  30972568 gcttatgcataaatg---cttatcatgataagcccttgtgctataagctgcaaataagctgtttatccaaaca 30972637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 264 - 393
Target Start/End: Original strand, 35959529 - 35959655
Alignment:
Q  264 atatacataaacaatttaactttgttttatcacttgccataaaaatagtttatgtgagcttatacataagtgtttattatcatgacaaacgcttgtgcta 363  Q
    ||||||| ||| ||||||||||| |||||||  || | ||| |||||| |||||||||||||||||||||    | ||||||||| ||  ||||||| ||    
T  35959529 atatacaaaaataatttaactttattttatccttttctatagaaatagcttatgtgagcttatacataag---ctcttatcatgataagagcttgtgata 35959625  T
Q  364 taaactgcaaatacgctatttatccaaaca 393  Q
    ||| ||||||||| ||| ||||||||||||    
T  35959626 taagctgcaaataagctgtttatccaaaca 35959655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 221 - 384
Target Start/End: Original strand, 12862281 - 12862437
Alignment:
Q  221 cataagttctccaagatgacttataaaaacaacttattataggatatacataaacaatttaactttgttttatcacttgccataaaaatagtttatgtga 320  Q
    |||||||||||||| ||  ||||| ||||||||||||   || ||||||| ||||||||||| | | |||||||  |||| |||||||||| |||||  |    
T  12862281 cataagttctccaatatagcttatgaaaacaacttat---agcatataca-aaacaatttaaatctattttatcttttgctataaaaatagattatgcaa 12862376  T
Q  321 gcttatacataagtgtttattatcatgacaaacgcttgtgctataaactgcaaatacgctattt 384  Q
    ||||| |||||||||    ||||||| | || ||||| |||||||| ||||||||| |||||||    
T  12862377 gcttaaacataagtg---cttatcattataagcgcttttgctataacctgcaaataggctattt 12862437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 190
Target Start/End: Original strand, 402475 - 402547
Alignment:
Q  118 tatttgagttcatctactgatataaattttgtgaggctatttgggagaacgtttgaaaacagcttatgacatt 190  Q
    |||||||||| ||| ||| | |||| |||||  || || ||||||||||||| ||||||||||||||||||||    
T  402475 tatttgagtttatcaactaacataagttttgcaagactgtttgggagaacgtatgaaaacagcttatgacatt 402547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 303 - 376
Target Start/End: Original strand, 28795944 - 28796014
Alignment:
Q  303 taaaaatagtttatgtgagcttatacataagtgtttattatcatgacaaacgcttgtgctataaactgcaaata 376  Q
    ||||||||||||| || |||||||||||||||||   ||||||||| ||| | ||||||||||| ||| |||||    
T  28795944 taaaaatagtttaggtaagcttatacataagtgt---ttatcatgataaatgtttgtgctataagctgtaaata 28796014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 322 - 394
Target Start/End: Original strand, 29002961 - 29003030
Alignment:
Q  322 cttatacataagtgtttattatcatgacaaacgcttgtgctataaactgcaaatacgctatttatccaaacag 394  Q
    |||||||||||||||||||   ||||| |||||||| | |||||| |||||||||   |||||||||||||||    
T  29002961 cttatacataagtgtttat---catgataaacgcttttactataagctgcaaataaattatttatccaaacag 29003030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 186
Target Start/End: Original strand, 28881691 - 28881760
Alignment:
Q  117 ttatttgagttcatctactgatataaattttgtgaggctatttgggagaacgtttgaaaacagcttatga 186  Q
    ||||||||| | |||||||||||||   ||||||||  ||||||||||| | | ||||||||||||||||    
T  28881691 ttatttgagcttatctactgatatagcatttgtgagattatttgggagagcttatgaaaacagcttatga 28881760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 190
Target Start/End: Original strand, 34610738 - 34610811
Alignment:
Q  117 ttatttgagttcatctactgatataaattttgtgaggctatttgggagaacgtttgaaaacagcttatgacatt 190  Q
    ||||||||| | ||||||||| |||| ||||||    |||||||||||||| | ||||||| ||||||||||||    
T  34610738 ttatttgagcttatctactgacataagttttgtacaactatttgggagaacttatgaaaactgcttatgacatt 34610811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 272 - 333
Target Start/End: Original strand, 46778308 - 46778369
Alignment:
Q  272 aaacaatttaactttgttttatcacttgccataaaaatagtttatgtgagcttatacataag 333  Q
    ||||||||||||||| ||||||| ||||| ||| |||||| |||| | |||| |||||||||    
T  46778308 aaacaatttaactttattttatctcttgctatagaaatagcttatataagctgatacataag 46778369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 1e-22; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 683 - 774
Target Start/End: Complemental strand, 8831268 - 8831177
Alignment:
Q  683 tgcttctggttagttatcgacttcttgtgtctgcaaagattactggctgctgctttttgtaatagactgcttcttaattacttgctggtagt 774  Q
    ||||| ||||||||||| |||||||||||||| |||||| ||||||||||||| ||||||||||| ||||| | |||||||| |||||||||    
T  8831268 tgcttttggttagttattgacttcttgtgtctacaaagactactggctgctgccttttgtaataggctgctgcataattactcgctggtagt 8831177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 209 - 393
Target Start/End: Complemental strand, 32372673 - 32372495
Alignment:
Q  209 cagcttattttgcataagttctccaagatgacttataaaaacaacttattataggatatacataaacaatttaactttgttttatcacttgccataaaaa 308  Q
    |||||||||||  ||| |||||||||||| |||| | |||||| |||||   || ||||||| |||||||| |||||| ||||||||  ||| |||| ||    
T  32372673 cagcttattttttatatgttctccaagataacttgtgaaaacagcttat---agcatatacaaaaacaattcaactttattttatcaggtgctataataa 32372577  T
Q  309 tagtttatgtgagcttatacataagtgtttattatcatgacaaacgcttgtgctataaactgcaaatacgctatttatccaaaca 393  Q
    |||||||||| ||  |||||||||| |    ||||||||| ||  ||||||||||||| ||||||||| | | ||||||||||||    
T  32372576 tagtttatgtaagtgtatacataaggg---cttatcatgataagtgcttgtgctataagctgcaaataagttgtttatccaaaca 32372495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 117 - 193
Target Start/End: Complemental strand, 10640091 - 10640015
Alignment:
Q  117 ttatttgagttcatctactgatataaattttgtgaggctatttgggagaacgtttgaaaacagcttatgacattttt 193  Q
    ||||||||||| ||||||||| |||| ||||||||   | ||||||||||| | |||||||||||||||||||||||    
T  10640091 ttatttgagtttatctactgacataagttttgtgatattgtttgggagaacttatgaaaacagcttatgacattttt 10640015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 209 - 392
Target Start/End: Original strand, 7319030 - 7319209
Alignment:
Q  209 cagcttattttgcataagttctccaagatgacttataaaaacaacttattataggatatacataaacaatttaactttgttttatcacttgccataaaaa 308  Q
    ||||||||||| |||||||||||||||||  ||||| ||||||  |||| ||||  ||  |  ||||||||| ||||| ||||||   ||||  || |||    
T  7319030 cagcttatttt-cataagttctccaagatagcttatgaaaacagtttataatagcttaagcgaaaacaatttcactttattttatattttgcgttagaaa 7319128  T
Q  309 tagtttatgtgagcttatacataagtgtttattatcatgacaaacgcttgtgctataaactgcaaatacgctatttatccaaac 392  Q
    ||| |||||| ||||||| |||||||| ||||   ||||| || |||||||||||||| ||| ||||| ||| ||||| |||||    
T  7319129 tagcttatgtaagcttatgcataagtgcttat---catgataagcgcttgtgctataagctgtaaataagctgtttattcaaac 7319209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 117 - 190
Target Start/End: Complemental strand, 41419457 - 41419384
Alignment:
Q  117 ttatttgagttcatctactgatataaattttgtgaggctatttgggagaacgtttgaaaacagcttatgacatt 190  Q
    ||||||||| | ||||||||| ||||||||||||||  | ||||||| ||| | ||||||||||||||||||||    
T  41419457 ttatttgagctaatctactgacataaattttgtgagattgtttgggataacttgtgaaaacagcttatgacatt 41419384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 265 - 324
Target Start/End: Complemental strand, 35446051 - 35445992
Alignment:
Q  265 tatacataaacaatttaactttgttttatcacttgccataaaaatagtttatgtgagctt 324  Q
    |||||| ||||||||||||||| |||||||| |||| |||||||||| |||||| |||||    
T  35446051 tatacaaaaacaatttaactttattttatcatttgctataaaaatagcttatgtaagctt 35445992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 187
Target Start/End: Complemental strand, 41534576 - 41534506
Alignment:
Q  117 ttatttgagttcatctactgatataaattttgtgaggctatttgggagaacgtttgaaaacagcttatgac 187  Q
    ||||||||| | ||||||||| ||||||||||||||  | ||||||| ||| | |||||||||||||||||    
T  41534576 ttatttgagctaatctactgacataaattttgtgagattgtttgggataacttgtgaaaacagcttatgac 41534506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 193
Target Start/End: Complemental strand, 3520715 - 3520639
Alignment:
Q  117 ttatttgagttcatctactgatataaattttgtgaggctatttgggagaacgtttgaaaacagcttatgacattttt 193  Q
    ||||||||| |||||||||  ||||| || |||||| || ||||||||||| | |||||||| |||||||| |||||    
T  3520715 ttatttgagctcatctactagtataagttgtgtgagactgtttgggagaacttatgaaaacatcttatgactttttt 3520639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 193
Target Start/End: Original strand, 7705914 - 7706006
Alignment:
Q  97 gcctgtttggattgacttaattatttgagttcatctactgatataaattttgtgaggctatttgggagaacgtttgaaaacagcttatgacattttt 193  Q
    |||||||||||||||||||    ||||||   |||||||   |||| |||||||| ||| ||||||||||| | |||||||||||||||||| ||||    
T  7705914 gcctgtttggattgactta----tttgagcatatctactagcataagttttgtgacgctctttgggagaacttatgaaaacagcttatgacagtttt 7706006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 264 - 365
Target Start/End: Original strand, 3932758 - 3932860
Alignment:
Q  264 atatacataaacaatttaactttgttttatcacttgccataaaaatagtttatgtgag-cttatacataagtgtttattatcatgacaaacgcttgtgct 362  Q
    ||||||| |||||||| |||||  |||||||  |||| |||||||||| |||||| |  |||||||||||||| | |||||||||| ||  | |||||||    
T  3932758 atatacaaaaacaattaaacttcattttatcttttgctataaaaatagcttatgtaattcttatacataagtggtgattatcatgataagtgtttgtgct 3932857  T
Q  363 ata 365  Q
    |||    
T  3932858 ata 3932860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 340 - 394
Target Start/End: Original strand, 9202884 - 9202938
Alignment:
Q  340 ttatcatgacaaacgcttgtgctataaactgcaaatacgctatttatccaaacag 394  Q
    ||||||||| |||| |||||||||||| ||||||||| | | |||||||||||||    
T  9202884 ttatcatgataaacacttgtgctataagctgcaaataagatgtttatccaaacag 9202938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 193
Target Start/End: Original strand, 16457938 - 16457987
Alignment:
Q  144 ttttgtgaggctatttgggagaacgtttgaaaacagcttatgacattttt 193  Q
    ||||||||| || ||||||||||| | |||||||||||||||||| ||||    
T  16457938 ttttgtgagactgtttgggagaacttatgaaaacagcttatgacagtttt 16457987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 340 - 393
Target Start/End: Original strand, 24030548 - 24030601
Alignment:
Q  340 ttatcatgacaaacgcttgtgctataaactgcaaatacgctatttatccaaaca 393  Q
    ||||||||| ||  ||||||||||||| ||||||||| ||| ||||||||||||    
T  24030548 ttatcatgataagtgcttgtgctataagctgcaaataagctgtttatccaaaca 24030601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 343
Target Start/End: Complemental strand, 29925886 - 29925759
Alignment:
Q  212 cttattttgcataagttctccaagatgacttataaaaacaacttattataggatatacataaacaatttaactttgttttatcacttgccataaaaatag 311  Q
    |||||||| |||||||||||||| ||  |||||  |||||||||||   || | ||||| ||||||||||||  | |||||||  |||| ||||||||||    
T  29925886 cttatttt-cataagttctccaatatagcttatgtaaacaacttat---agcacatacagaaacaatttaacgctattttatcttttgctataaaaatag 29925791  T
Q  312 tttatgtgagcttatacataagtgtttattat 343  Q
     |||||  ||| ||||| |||| |||||||||    
T  29925790 cttatgcaagcatatacttaagcgtttattat 29925759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 2e-20; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 117 - 394
Target Start/End: Original strand, 1058009 - 1058274
Alignment:
Q  117 ttatttgagttcatctactgatataaattttgtgaggctatttgggagaacgtttgaaaacagcttatgacattttttcacaatannnnnnncagcttat 216  Q
    ||||||||| | ||||||| | |||| ||||||||| || ||||||||||| ||||||||| |||||||||||||||   || ||       | ||||||    
T  1058009 ttatttgagcttatctacttacataagttttgtgagactgtttgggagaacttttgaaaactgcttatgacattttt---cattagttttttccgcttat 1058105  T
Q  217 tttgcataagttctccaagatgacttataaaaacaacttattataggatatacataaacaatttaactttgttttatcacttgccataaaaatagtttat 316  Q
    ||| ||||||||||||||||| |  | | |||| | |   |||||| ||||||| |||||  |||||||| |||||| | |||| |||||||||| ||||    
T  1058106 ttt-cataagttctccaagataa--tgtgaaaatagc---ttatagcatatacaaaaacagattaactttattttatgatttgctataaaaatagcttat 1058199  T
Q  317 gtgagcttatacataagtgtttattatcatgacaaacgcttgtgctataaactgcaaatacgctatttatccaaacag 394  Q
    || |||||||||||||| |    |||||||   || |||||||||||||| ||||||||| ||| ||||| |||||||    
T  1058200 gtaagcttatacataagcg---cttatcatagtaagcgcttgtgctataagctgcaaataagctgtttattcaaacag 1058274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 257 - 332
Target Start/End: Original strand, 10758322 - 10758397
Alignment:
Q  257 ttataggatatacataaacaatttaactttgttttatcacttgccataaaaatagtttatgtgagcttatacataa 332  Q
    |||||| ||||||| ||||||||||||||| |||||| | |||| ||| |||||||||| ||||||||||||||||    
T  10758322 ttatagcatatacaaaaacaatttaactttattttatgatttgctatagaaatagtttacgtgagcttatacataa 10758397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 304 - 390
Target Start/End: Original strand, 9130423 - 9130506
Alignment:
Q  304 aaaaatagtttatgtgagcttatacataagtgtttattatcatgacaaacgcttgtgctataaactgcaaatacgctatttatccaa 390  Q
    |||||||| ||||| ||||||||||||||||| |||| || ||||| |   |||||||||||| ||||||||| |||||||||||||    
T  9130423 aaaaatagcttatgcgagcttatacataagtgattatcatgatgacca---cttgtgctataagctgcaaataagctatttatccaa 9130506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 193
Target Start/End: Complemental strand, 40981230 - 40981166
Alignment:
Q  129 atctactgatataaattttgtgaggctatttgggagaacgtttgaaaacagcttatgacattttt 193  Q
    |||||||| ||||  ||||| |||||| ||||||||||| |||||||||| ||||||||||||||    
T  40981230 atctactggtatatgttttgcgaggctgtttgggagaacatttgaaaacaacttatgacattttt 40981166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 189
Target Start/End: Complemental strand, 11376841 - 11376768
Alignment:
Q  117 ttatttgagttcatctactgatataaatt-ttgtgaggctatttgggagaacgtttgaaaacagcttatgacat 189  Q
    ||||||||| | |||||||||||||| || ||||||| |||||||||||||| | |||||| ||||| ||||||    
T  11376841 ttatttgagcttatctactgatataagttcttgtgagactatttgggagaacttatgaaaatagcttgtgacat 11376768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 302 - 393
Target Start/End: Original strand, 14956406 - 14956494
Alignment:
Q  302 ataaaaatagtttatgtgagcttatacataagtgtttattatcatgacaaacgcttgtgctataaactgcaaatacgctatttatccaaaca 393  Q
    |||||||||| |||||  |||||||||||||||| ||||   ||||| || || ||||||||||| ||||||||| | | ||||||||||||    
T  14956406 ataaaaatagcttatgcaagcttatacataagtgcttat---catgataagcgattgtgctataagctgcaaataagttgtttatccaaaca 14956494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 167
Target Start/End: Complemental strand, 38602481 - 38602415
Alignment:
Q  97 gcctgtttggattgacttaattatttgagttcatctactgatataaattttgtgaggctatttgggagaac 167  Q
    |||||||||||||||||||    |||||| | ||||||||| |||| |||||||||||| |||||||||||    
T  38602481 gcctgtttggattgactta----tttgagcttatctactgacataagttttgtgaggctgtttgggagaac 38602415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 193
Target Start/End: Original strand, 35534545 - 35534621
Alignment:
Q  117 ttatttgagttcatctactgatataaattttgtgaggctatttgggagaacgtttgaaaacagcttatgacattttt 193  Q
    ||||||||| | ||||||| | |||| ||||||||| || |||| |||||| | |||||||||||||||||| ||||    
T  35534545 ttatttgagcttatctactaacataagttttgtgagactgtttgagagaacttgtgaaaacagcttatgacaatttt 35534621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 257 - 332
Target Start/End: Original strand, 12497297 - 12497372
Alignment:
Q  257 ttataggatatacataaacaatttaactttgttttatcacttgccataaaaatagtttatgtgagcttatacataa 332  Q
    |||||| ||||||| |||||| |||||||| |||||||  |||| |||||||| | |||||  |||||||||||||    
T  12497297 ttatagcatatacaaaaacaagttaactttattttatcttttgctataaaaatggcttatgcaagcttatacataa 12497372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 333
Target Start/End: Complemental strand, 12976260 - 12976141
Alignment:
Q  209 cagcttattttgcataagttctccaagatgacttataaaaacaacttattataggatatacataaacaatttaactttgttttatcacttgccataaaaa 308  Q
    ||||||||||  ||||||||||| || ||  |||||||||||||   ||| ||| ||||| | ||  ||||||||||| ||||||   |||| ||| |||    
T  12976260 cagcttattt--cataagttctctaatatagcttataaaaacaa---attgtagcatataaaaaattaatttaactttattttatattttgctatagaaa 12976166  T
Q  309 tagtttatgtgagcttatacataag 333  Q
    ||| |||||||||||||||||||||    
T  12976165 tagcttatgtgagcttatacataag 12976141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 193
Target Start/End: Complemental strand, 26771381 - 26771327
Alignment:
Q  139 ataaattttgtgaggctatttgggagaacgtttgaaaacagcttatgacattttt 193  Q
    |||| ||||||||| || ||||||||||| | |||||||||||||||||| ||||    
T  26771381 ataagttttgtgagactgtttgggagaacttatgaaaacagcttatgacaatttt 26771327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 189
Target Start/End: Complemental strand, 27754519 - 27754469
Alignment:
Q  139 ataaattttgtgaggctatttgggagaacgtttgaaaacagcttatgacat 189  Q
    |||| ||||||||| |||||||||||||| | ||||||||| |||||||||    
T  27754519 ataagttttgtgagactatttgggagaacttatgaaaacagtttatgacat 27754469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 340 - 394
Target Start/End: Complemental strand, 40981054 - 40981000
Alignment:
Q  340 ttatcatgacaaacgcttgtgctataaactgcaaatacgctatttatccaaacag 394  Q
    |||||| || || |||||||||||||| ||||||||| ||| |||||||||||||    
T  40981054 ttatcaagataagcgcttgtgctataagctgcaaataagctgtttatccaaacag 40981000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 179
Target Start/End: Original strand, 43717866 - 43717928
Alignment:
Q  117 ttatttgagttcatctactgatataaattttgtgaggctatttgggagaacgtttgaaaacag 179  Q
    ||||||||| | ||||| ||| |||| ||||||||| |||||||||||||| | |||||||||    
T  43717866 ttatttgagcttatctattgacataagttttgtgagactatttgggagaacttatgaaaacag 43717928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 190
Target Start/End: Complemental strand, 1930161 - 1930100
Alignment:
Q  129 atctactgatataaattttgtgaggctatttgggagaacgtttgaaaacagcttatgacatt 190  Q
    ||||||||| |||| ||||||||   ||||||||||||| | ||||||||| ||||||||||    
T  1930161 atctactgacataagttttgtgacattatttgggagaacttgtgaaaacagtttatgacatt 1930100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 297 - 338
Target Start/End: Complemental strand, 11861771 - 11861730
Alignment:
Q  297 ttgccataaaaatagtttatgtgagcttatacataagtgttt 338  Q
    |||| ||| |||||| ||||||||||||||||||||||||||    
T  11861771 ttgctatagaaatagcttatgtgagcttatacataagtgttt 11861730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 6e-18; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 224 - 394
Target Start/End: Complemental strand, 41407336 - 41407171
Alignment:
Q  224 aagttctccaagatgacttataaaaacaacttattataggatatacataaa-caatttaactttgttttatcacttgccataaaaatagtttatgtgagc 322  Q
    |||||||| ||||  ||||||||||| |||||||   || ||||||| ||| |||||||||||| |||||||  |||  | | |||||| |||||| |||    
T  41407336 aagttctcaaagaaaacttataaaaataacttat---agcatatacaaaaaacaatttaactttattttatcttttggtacagaaatagcttatgtaagc 41407240  T
Q  323 ttatacataagtgtttattatcatgacaaacgcttgtgctataaactgcaaatacgctatttatccaaacag 394  Q
    ||||||||||||| ||||   ||||| || |||||||||||||| ||||||| | ||| |||||||||||||    
T  41407239 ttatacataagtgcttat---catgataagcgcttgtgctataagctgcaaacaagctgtttatccaaacag 41407171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 272 - 394
Target Start/End: Original strand, 15757740 - 15757866
Alignment:
Q  272 aaacaatttaactttgttttatcacttgccataaaaatagtttatgtgagcttatacataagtgtttat----tatcatgacaaacgcttgtgctataaa 367  Q
    ||||||||||||||| |||||||| || |  || | |||| |||||||||||||||||||||  |||||    |||||||| || ||||||||||||||     
T  15757740 aaacaatttaactttattttatcattttctttagatatagcttatgtgagcttatacataagcttttatcgcttatcatgataagcgcttgtgctataag 15757839  T
Q  368 ctgcaaatacgctatttatccaaacag 394  Q
    ||| ||||| ||| |||||||||||||    
T  15757840 ctgaaaataagctgtttatccaaacag 15757866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 264 - 332
Target Start/End: Original strand, 41812163 - 41812231
Alignment:
Q  264 atatacataaacaatttaactttgttttatcacttgccataaaaatagtttatgtgagcttatacataa 332  Q
    ||||||| ||||||||||||||  ||||| || ||||||||||||||| |||||| |||||||||||||    
T  41812163 atatacaaaaacaatttaacttcattttaccatttgccataaaaatagcttatgtaagcttatacataa 41812231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 257 - 333
Target Start/End: Original strand, 42659217 - 42659293
Alignment:
Q  257 ttataggatatacataaacaatttaactttgttttatcacttgccataaaaatagtttatgtgagcttatacataag 333  Q
    |||||| ||||||| ||||||||| ||||| ||||| || || |||||||||||| |||||| ||||||||||||||    
T  42659217 ttatagcatatacaaaaacaatttcactttattttaccattttccataaaaatagcttatgtaagcttatacataag 42659293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 212 - 333
Target Start/End: Complemental strand, 32592631 - 32592515
Alignment:
Q  212 cttattttgcataagttctccaagatgacttataaaaacaacttattataggatatacataaacaatttaactttgttttatcacttgccataaaaatag 311  Q
    |||||||| |||||||||||||| ||  ||||||||||||||||||   ||  |||||| |||||||||||| || |||||||  || | ||||||||||    
T  32592631 cttatttt-cataagttctccaatattgcttataaaaacaacttat---agcgtataca-aaacaatttaacattattttatctttttctataaaaatag 32592537  T
Q  312 tttatgtgagcttatacataag 333  Q
    ||||||  ||||||||||||||    
T  32592536 tttatgcaagcttatacataag 32592515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 117 - 190
Target Start/End: Complemental strand, 4607063 - 4606990
Alignment:
Q  117 ttatttgagttcatctactgatataaattttgtgaggctatttgggagaacgtttgaaaacagcttatgacatt 190  Q
    ||||||||| | ||||||  |||||| ||||||||| |||||||||||||| | |||||||| |||||||||||    
T  4607063 ttatttgagcttatctaccaatataagttttgtgagactatttgggagaacttgtgaaaacaacttatgacatt 4606990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 148 - 193
Target Start/End: Original strand, 41812055 - 41812100
Alignment:
Q  148 gtgaggctatttgggagaacgtttgaaaacagcttatgacattttt 193  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||    
T  41812055 gtgaggctgtttgggagaacttttgaaaacagcttatgacattttt 41812100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 193
Target Start/End: Complemental strand, 42419931 - 42419855
Alignment:
Q  117 ttatttgagttcatctactgatataaattttgtgaggctatttgggagaacgtttgaaaacagcttatgacattttt 193  Q
    ||||||||||| |||| |||| |||| |||| |||| || ||||||||||| |  ||||||||||||||||||||||    
T  42419931 ttatttgagtttatcttctgacataagttttttgagactgtttgggagaacttacgaaaacagcttatgacattttt 42419855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 209 - 375
Target Start/End: Original strand, 33319834 - 33319994
Alignment:
Q  209 cagcttattttgcataagttctccaagatgacttataaaaacaacttattataggatatacataaacaatttaactttgtt-ttatcacttgccataaaa 307  Q
    ||||||||||| |||||||||||||||||   |||| ||||||  ||||   || ||||||| ||||| |||||||||  | |||||| || | ||||||    
T  33319834 cagcttatttt-cataagttctccaagatagtttatgaaaacagtttat---agtatatacaaaaacagtttaacttttatgttatcatttactataaaa 33319929  T
Q  308 atagtttatgtgagcttatacataagtgtttattatcatgacaaacgcttgtgctataaactgcaaat 375  Q
    ||||||||||| | ||| |||||||| |   ||||||| || || |||||||||||||| ||||||||    
T  33319930 atagtttatgtaaacttttacataagcg---attatcaggataagcgcttgtgctataagctgcaaat 33319994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 189
Target Start/End: Original strand, 42659143 - 42659215
Alignment:
Q  117 ttatttgagttcatctactgatataaattttgtgaggctatttgggagaacgtttgaaaacagcttatgacat 189  Q
    ||||||||| | || |||||  |||| ||||||||| || ||||||||||  |||||||||||||||||||||    
T  42659143 ttatttgagcttatttactggcataagttttgtgagactgtttgggagaagttttgaaaacagcttatgacat 42659215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 191
Target Start/End: Original strand, 41293122 - 41293169
Alignment:
Q  144 ttttgtgaggctatttgggagaacgtttgaaaacagcttatgacattt 191  Q
    ||||||||| |||||||||||||| | | |||||||||||||||||||    
T  41293122 ttttgtgagactatttgggagaacttataaaaacagcttatgacattt 41293169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 344 - 394
Target Start/End: Original strand, 5745560 - 5745610
Alignment:
Q  344 catgacaaacgcttgtgctataaactgcaaatacgctatttatccaaacag 394  Q
    ||||| ||||||||||| ||||| ||||||||| ||| |||||||||||||    
T  5745560 catgataaacgcttgtgatataagctgcaaataagctctttatccaaacag 5745610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 193
Target Start/End: Complemental strand, 11864009 - 11863963
Alignment:
Q  147 tgtgaggctatttgggagaacgtttgaaaacagcttatgacattttt 193  Q
    |||||| || ||||||||||| |||||||||| ||||||||||||||    
T  11864009 tgtgagactgtttgggagaacatttgaaaacaacttatgacattttt 11863963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 191
Target Start/End: Complemental strand, 13325708 - 13325634
Alignment:
Q  117 ttatttgagttcatctactgatataaattttgtgaggctatttgggagaacgtttgaaaacagcttatgacattt 191  Q
    ||||||||| | ||| | |||||||| |||| ||||  | || |||||||| |||||||||||||||||||||||    
T  13325708 ttatttgagcttatcaattgatataagttttatgagattgttcgggagaacttttgaaaacagcttatgacattt 13325634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 229 - 333
Target Start/End: Complemental strand, 24626324 - 24626223
Alignment:
Q  229 ctccaagatgacttataaaaacaacttattataggatatacataaacaatttaactttgttttatcacttgccataaaaatagtttatgtgagcttatac 328  Q
    |||||||||  ||||| ||||||||||||   || ||||||| |||||||||||||||||||||||  || | ||| |||||| |||||| |||||||||    
T  24626324 ctccaagatagcttatgaaaacaacttat---agaatatacaaaaacaatttaactttgttttatcctttcctatagaaatagcttatgtaagcttatac 24626228  T
Q  329 ataag 333  Q
    |||||    
T  24626227 ataag 24626223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 350 - 393
Target Start/End: Complemental strand, 9604784 - 9604741
Alignment:
Q  350 aaacgcttgtgctataaactgcaaatacgctatttatccaaaca 393  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||    
T  9604784 aaacgcttgtgctataaactgcaaataagctgtttatccaaaca 9604741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 272 - 376
Target Start/End: Complemental strand, 18076185 - 18076084
Alignment:
Q  272 aaacaatttaactttgttttatcacttgccataaaaatagtttatgtgagcttatacataagtgtttattatcatgacaaacgcttgtgctataaactgc 371  Q
    |||||||||||| || |||| ||  |||| |||||||||  |||||  |||||||||||||||| |||||   |||| || |||||||||||||| ||||    
T  18076185 aaacaatttaaccttattttctcttttgctataaaaataacttatgcaagcttatacataagtgcttatt---atgataagcgcttgtgctataagctgc 18076089  T
Q  372 aaata 376  Q
    |||||    
T  18076088 aaata 18076084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 354 - 394
Target Start/End: Complemental strand, 6538427 - 6538387
Alignment:
Q  354 gcttgtgctataaactgcaaatacgctatttatccaaacag 394  Q
    ||||||||||||| ||||||||| |||||||||||||||||    
T  6538427 gcttgtgctataagctgcaaataagctatttatccaaacag 6538387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 193
Target Start/End: Complemental strand, 24982831 - 24982767
Alignment:
Q  129 atctactgatataaattttgtgaggctatttgggagaacgtttgaaaacagcttatgacattttt 193  Q
    ||||||| | |||| ||||||||| || ||| ||||||| ||||| |||||||||||||||||||    
T  24982831 atctactaacataagttttgtgagactgttttggagaacatttgagaacagcttatgacattttt 24982767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 221 - 282
Target Start/End: Complemental strand, 8201270 - 8201212
Alignment:
Q  221 cataagttctccaagatgacttataaaaacaacttattataggatatacataaacaatttaa 282  Q
    |||||||||||||| || |||||||||||||||   |||||||||| ||| |||||||||||    
T  8201270 cataagttctccaacataacttataaaaacaac---ttataggatacacaaaaacaatttaa 8201212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 189
Target Start/End: Original strand, 20368127 - 20368185
Alignment:
Q  131 ctactgatataaattttgtgaggctatttgggagaacgtttgaaaacagcttatgacat 189  Q
    ||||||| |||| |||||| || |||||||||||||| | |||||||| ||||||||||    
T  20368127 ctactgacataagttttgtaagactatttgggagaacttatgaaaacaacttatgacat 20368185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 340 - 394
Target Start/End: Complemental strand, 35069486 - 35069432
Alignment:
Q  340 ttatcatgacaaacgcttgtgctataaactgcaaatacgctatttatccaaacag 394  Q
    ||||||||| ||||||||||||||||| ||||||||| | | |||||| ||||||    
T  35069486 ttatcatgataaacgcttgtgctataagctgcaaataagttgtttatcaaaacag 35069432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 264 - 333
Target Start/End: Complemental strand, 30536475 - 30536406
Alignment:
Q  264 atatacataaacaatttaactttgttttatcacttgccataaaaatagtttatgtgagcttatacataag 333  Q
    ||||||| |||||||||||| || |||||||| |||| |||| ||||| |||||  | ||||||||||||    
T  30536475 atatacaaaaacaatttaacattattttatcatttgctataataatagcttatgcaaacttatacataag 30536406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 190
Target Start/End: Original strand, 34910341 - 34910414
Alignment:
Q  117 ttatttgagttcatctactgatataaattttgtgaggctatttgggagaacgtttgaaaacagcttatgacatt 190  Q
    ||||||||||| |||||||||||| | ||||| |||  | ||||| ||||  | ||||||||||||||||||||    
T  34910341 ttatttgagtttatctactgatatcagttttgggagattgtttggaagaaactatgaaaacagcttatgacatt 34910414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 117 - 193
Target Start/End: Original strand, 17822797 - 17822873
Alignment:
Q  117 ttatttgagttcatctactgatataaattttgtgaggctatttgggagaacgtttgaaaacagcttatgacattttt 193  Q
    ||||||||| | ||||||||| |||| || |||||| |||||| ||||||| | |||||||||||||||||||||||    
T  17822797 ttatttgagcttatctactgacataagttctgtgagactatttaggagaacatatgaaaacagcttatgacattttt 17822873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 707 - 774
Target Start/End: Complemental strand, 45094813 - 45094744
Alignment:
Q  707 ttgtgtctgcaaagattactggctgctgctttttg--taatagactgcttcttaattacttgctggtagt 774  Q
    ||||||||||||||  |||||||||||||||||||  |||||||||||| | ||||| ||||||||||||    
T  45094813 ttgtgtctgcaaagtctactggctgctgctttttgcctaatagactgctgcataattccttgctggtagt 45094744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 212 - 335
Target Start/End: Original strand, 54069442 - 54069561
Alignment:
Q  212 cttattttgcataagttctccaagatgacttataaaaacaacttattataggatatacataaacaatttaactttgttttatcacttgccataaaaatag 311  Q
    |||||||| |||| ||||| ||| || ||||||||||||||   ||||||| ||||||| |||||||||||| || |||||||  |||  ||||||||||    
T  54069442 cttatttt-catatgttcttcaatataacttataaaaacaa---attatagcatatacaaaaacaatttaacattattttatcttttgatataaaaatag 54069537  T
Q  312 tttatgtgagcttatacataagtg 335  Q
      ||||  ||||||||||||||||    
T  54069538 catatgcaagcttatacataagtg 54069561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 193
Target Start/End: Complemental strand, 24169401 - 24169325
Alignment:
Q  117 ttatttgagttcatctactgatataaattttgtgaggctatttgggagaacgtttgaaaacagcttatgacattttt 193  Q
    ||||| ||||| ||||||||  |||| ||||||||| ||||||| |||||| ||| |||| ||||||||||||||||    
T  24169401 ttattagagtttatctactggcataagttttgtgagactatttgagagaacttttaaaaatagcttatgacattttt 24169325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 139 - 333
Target Start/End: Complemental strand, 22030319 - 22030132
Alignment:
Q  139 ataaattttgtgaggctatttgggagaacgtttgaaaacagcttatgacattttttcacaatannnnnnncagcttattttgcataagttctccaagatg 238  Q
    |||| ||||||||| |||||||||||||| | ||||||||||||||||||  |||||| ||         ||| ||||||| ||||||||||| ||  |     
T  22030319 ataagttttgtgagcctatttgggagaacttatgaaaacagcttatgaca-attttca-aaagcttttctcaggttatttt-cataagttctctaattta 22030223  T
Q  239 acttataaaaacaacttattataggatatacataaacaatttaactttgttttatcacttgccataaaaatagtttatgtgagcttatacataag 333  Q
    |||| ||| ||||||   |||||| ||||||| ||| ||| ||||||| ||||||| ||| | ||| |||||| |||||||||||||||||||||    
T  22030222 acttgtaagaacaac---ttatagcatatacaaaaataatataactttattttatc-ctttctatagaaatagcttatgtgagcttatacataag 22030132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 272 - 393
Target Start/End: Complemental strand, 43505945 - 43505829
Alignment:
Q  272 aaacaatttaactttgttttatcacttgccataaaaatagtttatgtgagcttatacataagtgtttattatcatgacaaacgcttgtgctataaactgc 371  Q
    |||||||||||| || |||||||  |||| |||||||||| |||||  |||||||||||||||| |||| || |||     || |||||||||||  |||    
T  43505945 aaacaatttaacgttattttatcttttgctataaaaatagcttatgcaagcttatacataagtgcttatcatgatg-----cgtttgtgctataagttgc 43505851  T
Q  372 aaatacgctatttatccaaaca 393  Q
    ||||| | | ||||||||||||    
T  43505850 aaataagttgtttatccaaaca 43505829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 193
Target Start/End: Original strand, 25904155 - 25904231
Alignment:
Q  117 ttatttgagttcatctactgatataaattttgtgaggctatttgggagaacgtttgaaaacagcttatgacattttt 193  Q
    ||||||||| | ||| | ||| |||||||||||||| || ||||||||| | | ||||||||||||||| |||||||    
T  25904155 ttatttgagcttatccaatgacataaattttgtgagactgtttgggagagcttatgaaaacagcttatgccattttt 25904231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 276 - 332
Target Start/End: Complemental strand, 31851439 - 31851383
Alignment:
Q  276 aatttaactttgttttatcacttgccataaaaatagtttatgtgagcttatacataa 332  Q
    ||||||||||| |||||||| |||  |||||||||| |||||||||||| |||||||    
T  31851439 aatttaactttattttatcatttgttataaaaatagcttatgtgagcttctacataa 31851383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 264 - 340
Target Start/End: Complemental strand, 41336757 - 41336682
Alignment:
Q  264 atatacataaacaatttaactttgttttatcacttgccataaaaatagtttatgtgagcttatacataagtgtttat 340  Q
    ||||||| ||||||||||||||| |||||||  |||| |||||||||| |||||  ||| |||||||||||| ||||    
T  41336757 atatacaaaaacaatttaactttattttatc-tttgctataaaaatagcttatgcaagcctatacataagtgcttat 41336682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 193
Target Start/End: Original strand, 42403939 - 42404030
Alignment:
Q  97 gcctgtttggattgacttaattatttgagttcatctactgatataaattttgtgaggctatttgggagaacgtttgaaaacagcttatgacattttt 193  Q
    |||||||||||||||||||    |||||| | ||| ||||| |||| ||||||| | |||||||||||||  | |||||||||||||||||| ||||    
T  42403939 gcctgtttggattgactta----tttgagcttatcaactgacataagttttgtgtg-ctatttgggagaatttctgaaaacagcttatgacaatttt 42404030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 340 - 393
Target Start/End: Original strand, 44863098 - 44863151
Alignment:
Q  340 ttatcatgacaaacgcttgtgctataaactgcaaatacgctatttatccaaaca 393  Q
    ||||||||||||  ||||||||||||| ||||||||| | | ||||||||||||    
T  44863098 ttatcatgacaagtgcttgtgctataagctgcaaataagttgtttatccaaaca 44863151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 221 - 332
Target Start/End: Original strand, 50681122 - 50681230
Alignment:
Q  221 cataagttctccaagatgacttataaaaacaacttattataggatatacataaacaatttaactttgttttatcacttgccataaaaatagtttatgtga 320  Q
    ||||| |||||||| ||  |||||| |||||||||||   || ||||||| |||||||||||| || |||||||   | | |||||||||| || ||| |    
T  50681122 cataatttctccaatatagcttatataaacaacttat---agcatatacaaaaacaatttaacattattttatcttatcctataaaaatagcttttgtaa 50681218  T
Q  321 gcttatacataa 332  Q
    ||||||||||||    
T  50681219 gcttatacataa 50681230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 209 - 318
Target Start/End: Original strand, 40252129 - 40252234
Alignment:
Q  209 cagcttattttgcataagttctccaagatgacttataaaaacaacttattataggatatacataaacaatttaactttgttttatcacttgccataaaaa 308  Q
    ||||||||||| ||||||||||||||||| |||||| |||| | |   |||||  ||||||| |||| ||||||||||||||||||| |||| ||||||     
T  40252129 cagcttatttt-cataagttctccaagataacttatgaaaagagc---ttataacatatacaaaaacgatttaactttgttttatcatttgcaataaaac 40252224  T
Q  309 tagtttatgt 318  Q
    ||| ||||||    
T  40252225 tagcttatgt 40252234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 264 - 333
Target Start/End: Complemental strand, 46078144 - 46078075
Alignment:
Q  264 atatacataaacaatttaactttgttttatcacttgccataaaaatagtttatgtgagcttatacataag 333  Q
    ||||||| |||||||||||||||||||||||  || | |||||||||  |||||| ||||||||||||||    
T  46078144 atatacaaaaacaatttaactttgttttatctttttctataaaaataacttatgtaagcttatacataag 46078075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 193
Target Start/End: Original strand, 19302495 - 19302571
Alignment:
Q  117 ttatttgagttcatctactgatataaattttgtgaggctatttgggagaacgtttgaaaacagcttatgacattttt 193  Q
    ||||||||| | ||||||||| |||| |||||||||  ||||||||||||  | |||||||||||||||||| ||||    
T  19302495 ttatttgagcttatctactgacataagttttgtgagaatatttgggagaatttatgaaaacagcttatgacaatttt 19302571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 281 - 394
Target Start/End: Complemental strand, 5947137 - 5947031
Alignment:
Q  281 aactttgttttatcacttgccataaaaatagtttatgtgagcttatacataagtgtttattatcatgacaaacgcttgtgctataaactgcaaatacgct 380  Q
    ||||||||||||| | |||| || |||||||||||| | ||||||||||||||||     |||||||| ||    ||||||||||| || |||||| |||    
T  5947137 aactttgttttataatttgctattaaaatagtttatctaagcttatacataagtg---cctatcatgataa----ttgtgctataagcttcaaataagct 5947045  T
Q  381 atttatccaaacag 394  Q
    ||||||||||||||    
T  5947044 atttatccaaacag 5947031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 257 - 335
Target Start/End: Original strand, 33266550 - 33266628
Alignment:
Q  257 ttataggatatacataaacaatttaactttgttttatcacttgccataaaaatagtttatgtgagcttatacataagtg 335  Q
    ||||||||| || | || |||||||||||| |||||||  |||| ||| |||||| || ||||||||||||||||||||    
T  33266550 ttataggatgtagaaaagcaatttaactttattttatcctttgctatataaatagcttttgtgagcttatacataagtg 33266628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 340 - 394
Target Start/End: Original strand, 38500064 - 38500118
Alignment:
Q  340 ttatcatgacaaacgcttgtgctataaactgcaaatacgctatttatccaaacag 394  Q
    ||||||||| || |||||||||||||||||||||||| ||| |||||| ||||||    
T  38500064 ttatcatgataagcgcttgtgctataaactgcaaataagctgtttatctaaacag 38500118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 193
Target Start/End: Complemental strand, 5947379 - 5947303
Alignment:
Q  117 ttatttgagttcatctactgatataaattttgtgaggctatttgggagaacgtttgaaaacagcttatgacattttt 193  Q
    ||||||||| | ||||| || ||||| |||| |||| || ||||| ||||| ||||||| |||||||||||||||||    
T  5947379 ttatttgagcttatctattggtataagttttatgagactgtttggaagaacttttgaaaccagcttatgacattttt 5947303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 193
Target Start/End: Complemental strand, 20526584 - 20526508
Alignment:
Q  117 ttatttgagttcatctactgatataaattttgtgaggctatttgggagaacgtttgaaaacagcttatgacattttt 193  Q
    ||||||||||| ||||| || || |||||||||||| || |||| |||||| | ||||||||| |||| ||||||||    
T  20526584 ttatttgagtttatctattggtagaaattttgtgagactgtttgagagaacttatgaaaacagtttatcacattttt 20526508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 297 - 395
Target Start/End: Original strand, 21568734 - 21568829
Alignment:
Q  297 ttgccataaaaatagtttatgtgagcttatacataagtgtttattatcatgacaaacgcttgtgctataaactgcaaatacgctatttatccaaacaga 395  Q
    |||| |||||||||| |||||  ||||||||||||||||    ||||||||| || | ||| |||||||| ||||||| | ||| ||||||||||||||    
T  21568734 ttgctataaaaatagcttatgcaagcttatacataagtg---cttatcatgataagcacttatgctataagctgcaaacaagctgtttatccaaacaga 21568829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 354 - 394
Target Start/End: Complemental strand, 45004676 - 45004636
Alignment:
Q  354 gcttgtgctataaactgcaaatacgctatttatccaaacag 394  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  45004676 gcttgtgctataaactgcaaataagttatttatccaaacag 45004636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 302 - 394
Target Start/End: Complemental strand, 9210587 - 9210498
Alignment:
Q  302 ataaaaatagtttatgtgagcttatacataagtgtttattatcatgacaaacgcttgtgctataaactgcaaatacgctatttatccaaacag 394  Q
    |||||| ||| |||||  |||||||||||||| |   |||||||||| ||| | ||| ||||||| ||||||||| ||| |||||||||||||    
T  9210587 ataaaagtagcttatgcaagcttatacataagcg---attatcatgataaatgtttgcgctataagctgcaaataagctgtttatccaaacag 9210498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 189
Target Start/End: Complemental strand, 41040303 - 41040230
Alignment:
Q  117 ttatttgagttcatctactgatataaat-tttgtgaggctatttgggagaacgtttgaaaacagcttatgacat 189  Q
    ||||||||||| |||||||||||||| | ||||||||||| ||| | ||| | | || ||||||||||||||||    
T  41040303 ttatttgagtttatctactgatataagtatttgtgaggctctttagaagagcttatggaaacagcttatgacat 41040230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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