View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5054-Insertion-7 (Length: 637)

Name: NF5054-Insertion-7
Description: NF5054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5054-Insertion-7
NF5054-Insertion-7
[»] chr2 (21 HSPs)
chr2 (6-418)||(16071780-16072189)
chr2 (428-634)||(10173205-10173411)
chr2 (428-634)||(4974994-4975200)
chr2 (428-634)||(4992902-4993108)
chr2 (428-630)||(7696215-7696416)
chr2 (428-497)||(29487486-29487554)
chr2 (571-634)||(12343067-12343130)
chr2 (428-479)||(33533370-33533421)
chr2 (428-486)||(41086430-41086488)
chr2 (429-549)||(4472277-4472397)
chr2 (511-634)||(34230452-34230573)
chr2 (428-486)||(42802483-42802541)
chr2 (428-549)||(37770279-37770397)
chr2 (429-480)||(20572475-20572526)
chr2 (434-557)||(22884746-22884869)
chr2 (439-485)||(30965932-30965978)
chr2 (428-478)||(37559861-37559911)
chr2 (428-472)||(1269862-1269906)
chr2 (429-497)||(25504516-25504583)
chr2 (429-485)||(33788253-33788308)
chr2 (512-556)||(41113450-41113494)
[»] scaffold0050 (1 HSPs)
scaffold0050 (428-633)||(36958-37162)
[»] chr3 (17 HSPs)
chr3 (428-634)||(50518715-50518919)
chr3 (428-553)||(32010117-32010242)
chr3 (428-557)||(46358008-46358137)
chr3 (511-634)||(12086491-12086614)
chr3 (431-549)||(4171078-4171196)
chr3 (436-549)||(25594142-25594255)
chr3 (430-631)||(48892981-48893181)
chr3 (434-485)||(823029-823080)
chr3 (428-479)||(14893334-14893385)
chr3 (428-474)||(33143578-33143624)
chr3 (513-614)||(14194200-14194300)
chr3 (574-634)||(37123631-37123691)
chr3 (435-478)||(27399394-27399437)
chr3 (592-634)||(14755051-14755093)
chr3 (592-634)||(28937502-28937544)
chr3 (592-633)||(32010012-32010053)
chr3 (452-480)||(7105250-7105278)
[»] chr1 (21 HSPs)
chr1 (429-634)||(32882616-32882817)
chr1 (428-549)||(9312966-9313087)
chr1 (428-633)||(34775122-34775326)
chr1 (511-622)||(46768437-46768548)
chr1 (429-556)||(27905759-27905885)
chr1 (428-634)||(10785087-10785293)
chr1 (428-549)||(11439646-11439767)
chr1 (434-496)||(10605082-10605144)
chr1 (429-497)||(9557293-9557362)
chr1 (428-549)||(27102516-27102637)
chr1 (509-634)||(32863253-32863378)
chr1 (428-486)||(7451887-7451945)
chr1 (429-479)||(30762016-30762066)
chr1 (445-479)||(52278684-52278718)
chr1 (428-480)||(12636085-12636137)
chr1 (429-481)||(34159045-34159097)
chr1 (434-549)||(38546815-38546930)
chr1 (428-486)||(4431072-4431130)
chr1 (429-474)||(16577673-16577718)
chr1 (574-629)||(41126261-41126317)
chr1 (434-478)||(46768582-46768626)
[»] chr5 (16 HSPs)
chr5 (429-602)||(26405175-26405347)
chr5 (537-634)||(21398054-21398151)
chr5 (428-633)||(26045589-26045794)
chr5 (529-634)||(33109927-33110029)
chr5 (429-634)||(8297721-8297924)
chr5 (434-631)||(13953878-13954077)
chr5 (434-486)||(25992398-25992450)
chr5 (429-468)||(17853106-17853145)
chr5 (428-474)||(7194927-7194973)
chr5 (428-497)||(23426686-23426755)
chr5 (574-634)||(14302215-14302275)
chr5 (592-634)||(25992260-25992302)
chr5 (444-486)||(27713470-27713512)
chr5 (506-543)||(7682893-7682930)
chr5 (506-555)||(24071965-24072014)
chr5 (429-497)||(8731324-8731391)
[»] chr8 (9 HSPs)
chr8 (428-633)||(10248191-10248397)
chr8 (435-634)||(12197708-12197906)
chr8 (435-634)||(12442136-12442334)
chr8 (506-634)||(17656440-17656568)
chr8 (566-634)||(43312402-43312470)
chr8 (428-472)||(2613173-2613217)
chr8 (429-631)||(8862251-8862451)
chr8 (428-480)||(43312281-43312333)
chr8 (574-634)||(22325867-22325927)
[»] chr6 (6 HSPs)
chr6 (434-555)||(17278094-17278215)
chr6 (429-486)||(3880239-3880296)
chr6 (434-479)||(32933979-32934024)
chr6 (428-478)||(20701424-20701473)
chr6 (435-480)||(15120235-15120280)
chr6 (428-480)||(13423765-13423817)
[»] chr4 (16 HSPs)
chr4 (510-633)||(49747778-49747901)
chr4 (434-480)||(19814849-19814895)
chr4 (428-630)||(38636860-38637061)
chr4 (428-634)||(41117594-41117799)
chr4 (574-634)||(22810932-22810992)
chr4 (431-486)||(42719553-42719608)
chr4 (428-480)||(9262846-9262898)
chr4 (511-634)||(19311075-19311197)
chr4 (434-497)||(20632129-20632192)
chr4 (434-549)||(28967209-28967323)
chr4 (430-476)||(2061460-2061506)
chr4 (434-480)||(21983507-21983552)
chr4 (428-478)||(52009230-52009280)
chr4 (429-470)||(28377903-28377944)
chr4 (429-497)||(35947934-35948002)
chr4 (510-542)||(46487621-46487653)
[»] chr7 (16 HSPs)
chr7 (434-634)||(3478599-3478797)
chr7 (428-478)||(6726045-6726095)
chr7 (435-630)||(33719219-33719413)
chr7 (428-486)||(44755964-44756022)
chr7 (429-497)||(9107537-9107605)
chr7 (431-486)||(47456703-47456757)
chr7 (435-549)||(42532892-42533006)
chr7 (429-478)||(9427706-9427754)
chr7 (432-480)||(26385790-26385838)
chr7 (510-553)||(23983574-23983617)
chr7 (429-480)||(40292637-40292687)
chr7 (428-478)||(1321197-1321247)
chr7 (529-634)||(24324525-24324630)
chr7 (506-543)||(36674810-36674847)
chr7 (429-474)||(43235719-43235764)
chr7 (604-632)||(6716538-6716566)
[»] scaffold1384 (1 HSPs)
scaffold1384 (429-475)||(1286-1332)
[»] scaffold0002 (1 HSPs)
scaffold0002 (428-479)||(426554-426605)
[»] scaffold0119 (1 HSPs)
scaffold0119 (428-472)||(41796-41840)


Alignment Details
Target: chr2 (Bit Score: 357; Significance: 0; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 6 - 418
Target Start/End: Complemental strand, 16072189 - 16071780
Alignment:
Q  6 catgttaatggtaaatggttatgctagctctatagtgcattctcccattaatattctattttgactagctattcataatccttcaaagctaagatagatg 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  16072189 catgttaatggtaaatggttatgctagctctatagtgcattctccaattaatattctattttgacttgctattcacaatccttcaaagctaagatagatg 16072090  T
Q  106 ttactctaaaaggcaatcccactttttatccttatgattaaagcatccgtctttaggttttcccttaaaggttccttcaacattttaggtcggcaacttt 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  16072089 ttactctaaaaggcaatcccactttttatccttatgattaaagcatccgtttttaggttttcccttaaaggttccttcaacattttaggtcggcaacttt 16071990  T
Q  206 agcaatataatagcacacggactctatacttcaatcaattgtcctaattatttgtgggaatagaatatctttatcaaaaatttgggtgcggaattaagct 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16071989 agcaatataatagcacacggactctatacttcaatcaattgtcctaattatttgtgggaatagaatatctttatcaaaaatttgggtgcggaattaagct 16071890  T
Q  306 gaaaaaatgagnnnnnnnnntcagttggcgtgtggaataggtatggccatgcccatgcctatttttgtgttacgagcaaatgctatgtatttgcatttgg 405  Q
    |||||||||||         | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  16071889 gaaaaaatgag---aaaaaataagttggcgtgtggaataggtatggccatgcccatgcctatttttgtgttacgagcaaatgcaatgtatttgcatttgg 16071793  T
Q  406 gtttggttgttgc 418  Q
    |||||||||||||    
T  16071792 gtttggttgttgc 16071780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 428 - 634
Target Start/End: Original strand, 10173205 - 10173411
Alignment:
Q  428 aaacaacaaattttatttaacaaccagatccctgctcaagacgaacagagaccagtgaatcatagaatacnnnnnnnnggcgtcgtatataggcggagca 527  Q
    ||||| ||||||||| ||||||||||||| ||||||||||||||||||||| | ||||| |||| |||||         |||| ||||||||||||| ||    
T  10173205 aaacatcaaattttacttaacaaccagattcctgctcaagacgaacagagatcggtgaaacatataatacaaactaaaagcgttgtatataggcggaaca 10173304  T
Q  528 tccgaaaataaacaccttaaaagacaccccctagcaccacactcatcaaaatacatgtcaccgtctaaaacagacgccttcacgaaaacgaccactgtaa 627  Q
     | ||||||||||||| ||||||| ||| |  || || | || |||||||||||||||||| | |||||||||||| ||||| ||||||||| |||||||    
T  10173305 cctgaaaataaacaccctaaaagatacctctgaggacaatacccatcaaaatacatgtcacggcctaaaacagacgtcttcatgaaaacgactactgtaa 10173404  T
Q  628 aaacgat 634  Q
    |||||||    
T  10173405 aaacgat 10173411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 428 - 634
Target Start/End: Complemental strand, 4975200 - 4974994
Alignment:
Q  428 aaacaacaaattttatttaacaaccagatccctgctcaagacgaacagagaccagtgaatcatagaatacnnnnnnnnggcgtcgtatataggcggagca 527  Q
    ||||||||||||||||||||| | ||| || ||||||||||||||||||||| |||||| |  |||||||        |||||||||||||||| || ||    
T  4975200 aaacaacaaattttatttaaccatcaggtctctgctcaagacgaacagagactagtgaaactaagaatacaaactaaaggcgtcgtatataggctgaaca 4975101  T
Q  528 tccgaaaataaacaccttaaaagacaccccctagcaccacactcatcaaaatacatgtcaccgtctaaaacagacgccttcacgaaaacgaccactgtaa 627  Q
     ||||||||||||||| | ||| ||| ||   || |  |||| || |||| ||||   ||||  |||||||||||  |||||||||||||||||||||||    
T  4975100 cccgaaaataaacaccctgaaaaacatccttgaggataacacccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaa 4975001  T
Q  628 aaacgat 634  Q
    |||||||    
T  4975000 aaacgat 4974994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 428 - 634
Target Start/End: Complemental strand, 4993108 - 4992902
Alignment:
Q  428 aaacaacaaattttatttaacaaccagatccctgctcaagacgaacagagaccagtgaatcatagaatacnnnnnnnnggcgtcgtatataggcggagca 527  Q
    ||||||||||||||||||||| | ||| || ||||||||||||||||||||| |||||| |  |||||||        |||||||||||||||| || ||    
T  4993108 aaacaacaaattttatttaaccatcaggtctctgctcaagacgaacagagactagtgaaactaagaatacaaactaaaggcgtcgtatataggctgaaca 4993009  T
Q  528 tccgaaaataaacaccttaaaagacaccccctagcaccacactcatcaaaatacatgtcaccgtctaaaacagacgccttcacgaaaacgaccactgtaa 627  Q
     ||||||||||||||| | ||| ||| ||   || |  |||| || |||| ||||   ||||  |||||||||||  |||||||||||||||||||||||    
T  4993008 cccgaaaataaacaccctgaaaaacatccttgaggataacacccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaa 4992909  T
Q  628 aaacgat 634  Q
    |||||||    
T  4992908 aaacgat 4992902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 428 - 630
Target Start/End: Complemental strand, 7696416 - 7696215
Alignment:
Q  428 aaacaacaaattttatttaacaaccagatccctgctcaagacgaacagagaccagtgaatcatagaatacnnnnnnnnggcgtcgtatataggcggagca 527  Q
    ||||| ||||||||||| |||||||| |||||||||||||| |||||||||||  ||||    |||||||        ||   |||||||||||||| ||    
T  7696416 aaacagcaaattttattgaacaaccaaatccctgctcaagatgaacagagaccgatgaaattgagaatacaaacaaaaggaaccgtatataggcggaaca 7696317  T
Q  528 tccgaaaataaacaccttaaaagacaccccctagcaccacactcatcaaaatacatgtcaccgtctaaaacagacgccttcacgaaaacgaccactgtaa 627  Q
     || |||||||||||||||||| |||||||| || || |||| || |||||||||  |||||  |||||| | || |||||||||||||||||| |||||    
T  7696316 cccaaaaataaacaccttaaaa-acacccccgaggacaacacccaccaaaatacacatcaccacctaaaataaactccttcacgaaaacgaccaatgtaa 7696218  T
Q  628 aaa 630  Q
    |||    
T  7696217 aaa 7696215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 428 - 497
Target Start/End: Complemental strand, 29487554 - 29487486
Alignment:
Q  428 aaacaacaaattttatttaacaaccagatccctgctcaagacgaacagagaccagtgaatcatagaatac 497  Q
    ||||||||||||||||| || |||||||||||||||||||| ||||||||||| |||| |||||||||||    
T  29487554 aaacaacaaattttattaaa-aaccagatccctgctcaagatgaacagagaccggtgattcatagaatac 29487486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 571 - 634
Target Start/End: Complemental strand, 12343130 - 12343067
Alignment:
Q  571 catcaaaatacatgtcaccgtctaaaacagacgccttcacgaaaacgaccactgtaaaaacgat 634  Q
    |||||||||||| ||||||  ||||||||||| ||||||||||||||||| |||||||||||||    
T  12343130 catcaaaatacacgtcaccacctaaaacagactccttcacgaaaacgacctctgtaaaaacgat 12343067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 428 - 479
Target Start/End: Original strand, 33533370 - 33533421
Alignment:
Q  428 aaacaacaaattttatttaacaaccagatccctgctcaagacgaacagagac 479  Q
    |||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  33533370 aaacaacaaattttatttaacagccagatctctgctcaagacgaacagagac 33533421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 428 - 486
Target Start/End: Original strand, 41086430 - 41086488
Alignment:
Q  428 aaacaacaaattttatttaacaaccagatccctgctcaagacgaacagagaccagtgaa 486  Q
    |||||||||||||| || |||||| ||||| ||||||||||||||||||||||||||||    
T  41086430 aaacaacaaattttgttaaacaactagatctctgctcaagacgaacagagaccagtgaa 41086488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 429 - 549
Target Start/End: Complemental strand, 4472397 - 4472277
Alignment:
Q  429 aacaacaaattttatttaacaaccagatccctgctcaagacgaacagagaccagtgaatcatagaatacnnnnnnnnggcgtcgtatataggcggagcat 528  Q
    |||| ||||||||||| ||||| | |||||| | |||||| ||||||||  | |||||||| |||||||        |||||||||||||| |||| |||    
T  4472397 aacagcaaattttattcaacaatctgatccccgttcaagatgaacagagttcggtgaatcagagaatacaaactaaaggcgtcgtatatagacggaacat 4472298  T
Q  529 ccgaaaataaacaccttaaaa 549  Q
    ||||||||||||||| |||||    
T  4472297 ccgaaaataaacaccataaaa 4472277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 511 - 634
Target Start/End: Complemental strand, 34230573 - 34230452
Alignment:
Q  511 cgtatataggcggagcatccgaaaataaacaccttaaaagacaccccctagcaccacactcatcaaaatacatgtcaccgtctaaaacagacgccttcac 610  Q
    |||||||||||||| || |  |||||||||| | ||||| ||||||| ||| || |||  || ||||||||| |||||| |||||| ||||| | | |||    
T  34230573 cgtatataggcggaacaccaaaaaataaacatcgtaaaa-acaccccttagaacaacatccaccaaaatacacgtcaccatctaaa-cagactcttccac 34230476  T
Q  611 gaaaacgaccactgtaaaaacgat 634  Q
    ||||||||||||| ||||||||||    
T  34230475 gaaaacgaccactataaaaacgat 34230452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 428 - 486
Target Start/End: Complemental strand, 42802541 - 42802483
Alignment:
Q  428 aaacaacaaattttatttaacaaccagatccctgctcaagacgaacagagaccagtgaa 486  Q
    ||||||||||||||||| |||||||  ||||||  |||||||||||||||| |||||||    
T  42802541 aaacaacaaattttattaaacaacctaatccctattcaagacgaacagagatcagtgaa 42802483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 428 - 549
Target Start/End: Original strand, 37770279 - 37770397
Alignment:
Q  428 aaacaacaaattttatttaacaaccagatccctgctcaagacgaacagagaccagtgaatcatagaatacnnnnnnnnggcgtcgtatataggcggagca 527  Q
    ||||||||||||||||| |||| | |||||| || ||||||| |||||||| | ||||||   |||||||         |||||||||||||||||| ||    
T  37770279 aaacaacaaattttattgaacagctagatccatgatcaagacaaacagagatcggtgaatatgagaatacaaacaa---gcgtcgtatataggcggaaca 37770375  T
Q  528 tccgaaaataaacaccttaaaa 549  Q
     ||||||||||||||| |||||    
T  37770376 cccgaaaataaacaccctaaaa 37770397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 429 - 480
Target Start/End: Complemental strand, 20572526 - 20572475
Alignment:
Q  429 aacaacaaattttatttaacaaccagatccctgctcaagacgaacagagacc 480  Q
    ||||||||||||||||||| ||||| ||| || ||||| |||||||||||||    
T  20572526 aacaacaaattttatttaaaaaccacatctctcctcaaaacgaacagagacc 20572475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 434 - 557
Target Start/End: Original strand, 22884746 - 22884869
Alignment:
Q  434 caaattttatttaacaaccagatccctgctcaagacgaacagagaccagtgaatcatagaatacnnnnnnnnggcgtcgtatataggcggagcatccgaa 533  Q
    |||||||||||||| ||||| ||| |||||||||||||||| |||||   ||   | |||||||        ||||||||||||||||||| || |||||    
T  22884746 caaattttatttaaaaaccaaatctctgctcaagacgaacaaagaccgacgatatagagaatacaaactaaaggcgtcgtatataggcggaacacccgaa 22884845  T
Q  534 aataaacaccttaaaagacacccc 557  Q
    ||||||| || || || |||||||    
T  22884846 aataaactccatacaaaacacccc 22884869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 439 - 485
Target Start/End: Original strand, 30965932 - 30965978
Alignment:
Q  439 tttatttaacaaccagatccctgctcaagacgaacagagaccagtga 485  Q
    ||||||||| |||||||||||| ||||||||||||| ||||| ||||    
T  30965932 tttatttaaaaaccagatccctactcaagacgaacaaagaccggtga 30965978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 428 - 478
Target Start/End: Complemental strand, 37559911 - 37559861
Alignment:
Q  428 aaacaacaaattttatttaacaaccagatccctgctcaagacgaacagaga 478  Q
    |||||||||||||||||||| ||  ||||||||| | ||||||||||||||    
T  37559911 aaacaacaaattttatttaaaaatgagatccctgtttaagacgaacagaga 37559861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 428 - 472
Target Start/End: Complemental strand, 1269906 - 1269862
Alignment:
Q  428 aaacaacaaattttatttaacaaccagatccctgctcaagacgaa 472  Q
    ||||||||||||||||||||||| || ||| ||| ||||||||||    
T  1269906 aaacaacaaattttatttaacaatcaaatctctgttcaagacgaa 1269862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 429 - 497
Target Start/End: Original strand, 25504516 - 25504583
Alignment:
Q  429 aacaacaaattttatttaacaaccagatccctgctcaagacgaacagagaccagtgaatcatagaatac 497  Q
    |||| ||||||||||| || || |||||||||||||||||| |||||| ||| |||| ||| |||||||    
T  25504516 aacagcaaattttattaaa-aatcagatccctgctcaagacaaacagaaaccggtgattcagagaatac 25504583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 429 - 485
Target Start/End: Original strand, 33788253 - 33788308
Alignment:
Q  429 aacaacaaattttatttaacaaccagatccctgctcaagacgaacagagaccagtga 485  Q
    |||| |||||||||||||| ||||| ||| ||||| |||||||||||||||| ||||    
T  33788253 aacagcaaattttatttaa-aaccaaatctctgctaaagacgaacagagaccggtga 33788308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 512 - 556
Target Start/End: Original strand, 41113450 - 41113494
Alignment:
Q  512 gtatataggcggagcatccgaaaataaacaccttaaaagacaccc 556  Q
    ||||||||||||| |||||||||||||| ||| ||||| ||||||    
T  41113450 gtatataggcggaacatccgaaaataaataccctaaaaaacaccc 41113494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 428 - 633
Target Start/End: Complemental strand, 37162 - 36958
Alignment:
Q  428 aaacaacaaattttatttaacaaccagatccctgctcaagacgaacagagaccagtgaatcatagaatacnnnnnnnnggcgtcgtatataggcggagca 527  Q
    |||||||||| |||||| ||||||| ||||||||||||||||||||||||||| ||||| |  | |||||        | ||  ||||||||||||| ||    
T  37162 aaacaacaaaatttattaaacaacctgatccctgctcaagacgaacagagaccggtgaaactgataatacaaacaaaagacgctgtatataggcggaaca 37063  T
Q  528 tccgaaaataaacaccttaaaagacaccccctagcaccacactcatcaaaatacatgtcaccgtctaaaacagacgccttcacgaaaacgaccactgtaa 627  Q
    |||||||||||||||| ||||| ||||||   || ||||||| || ||||||||| ||||||  ||||||||||| |||||||| |||| ||||||||||    
T  37062 tccgaaaataaacaccataaaaaacacccatgaggaccacacccaacaaaatacacgtcaccacctaaaacagactccttcacg-aaaccaccactgtaa 36964  T
Q  628 aaacga 633  Q
    ||||||    
T  36963 aaacga 36958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 5e-27; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 428 - 634
Target Start/End: Original strand, 50518715 - 50518919
Alignment:
Q  428 aaacaacaaattttatttaacaaccagatccctgctcaagacgaacagagaccagtgaatcatagaatacnnnnnnnnggcgtcgtatataggcggagca 527  Q
    ||||| ||||||||||| |||||   ||||||||||||||||||||||||||  ||||| |  |||||||        || |||||||||||||||| ||    
T  50518715 aaacatcaaattttattaaacaatttgatccctgctcaagacgaacagagactggtgaaactgagaatacaaacaaaaggtgtcgtatataggcggaaca 50518814  T
Q  528 tccgaaaataaacaccttaaaagacaccccctagcaccacactcatcaaaatacatgtcaccgtctaaaacagacgccttcacgaaaacgaccactgtaa 627  Q
     ||||||||||||||| ||||| ||||||   || ||||||| || |||||||||  ||||| |||||||||||| |||||||| | || ||||||||||    
T  50518815 cccgaaaataaacaccctaaaa-acacccatgaggaccacacccaacaaaatacacctcaccatctaaaacagactccttcacg-ataccaccactgtaa 50518912  T
Q  628 aaacgat 634  Q
    |||||||    
T  50518913 aaacgat 50518919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 428 - 553
Target Start/End: Complemental strand, 32010242 - 32010117
Alignment:
Q  428 aaacaacaaattttatttaacaaccagatccctgctcaagacgaacagagaccagtgaatcatagaatacnnnnnnnnggcgtcgtatataggcggagca 527  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||| ||| |||||||         ||||||||||||||||||  |    
T  32010242 aaacaacaaattttatttaacaaccagatccctactcaagacgaacagagatcggtgattcagagaatacaacctaaaagcgtcgtatataggcggaata 32010143  T
Q  528 tccgaaaataaacaccttaaaagaca 553  Q
     | |||||||||||||||||||||||    
T  32010142 cctgaaaataaacaccttaaaagaca 32010117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 428 - 557
Target Start/End: Original strand, 46358008 - 46358137
Alignment:
Q  428 aaacaacaaattttatttaacaaccagatccctgctcaagacgaacagagaccagtgaatcatagaatacnnnnnnnnggcgtcgtatataggcggagca 527  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| | |||||        | ||  ||||||||||| | ||    
T  46358008 aaacaacaaattttatttaacaaccagatccctgctcaagacgaacagagaccagagattcagaaaatacaaactaaagacgctgtatataggcgaaaca 46358107  T
Q  528 tccgaaaataaacaccttaaaagacacccc 557  Q
     | |||||||||||||||||||||||||||    
T  46358108 cctgaaaataaacaccttaaaagacacccc 46358137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 511 - 634
Target Start/End: Complemental strand, 12086614 - 12086491
Alignment:
Q  511 cgtatataggcggagcatccgaaaataaacaccttaaaagacaccccctagcaccacactcatcaaaatacatgtcaccgtctaaaacagacgccttcac 610  Q
    |||||| ||||||| ||| |||||||||||| ||||||||| ||||||||  ||||||| || ||||||| |  |||||  |||||||||| |  ||||     
T  12086614 cgtataaaggcggaacattcgaaaataaacatcttaaaagataccccctaagaccacacccaccaaaataaacatcaccacctaaaacagatgtattcaa 12086515  T
Q  611 gaaaacgaccactgtaaaaacgat 634  Q
    |||||||| |||||||||||||||    
T  12086514 gaaaacgatcactgtaaaaacgat 12086491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 431 - 549
Target Start/End: Complemental strand, 4171196 - 4171078
Alignment:
Q  431 caacaaattttatttaacaaccagatccctgctcaagacgaacagagaccagtgaatcatagaatacnnnnnnnnggcgtcgtatataggcggagcatcc 530  Q
    ||||||||| |||| |||||| | ||||||||| |||||||||||||||| ||||| |  |||||||        ||||||||||||||||||| || |     
T  4171196 caacaaattctattaaacaactaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacct 4171097  T
Q  531 gaaaataaacaccttaaaa 549  Q
    ||||||||||||| |||||    
T  4171096 gaaaataaacaccctaaaa 4171078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 436 - 549
Target Start/End: Original strand, 25594142 - 25594255
Alignment:
Q  436 aattttatttaacaaccagatccctgctcaagacgaacagagaccagtgaatcatagaatacnnnnnnnnggcgtcgtatataggcggagcatccgaaaa 535  Q
    |||||||||||| ||||||||| ||||||||||| |||||||| | |||| ||| ||||||          |||||||||||||||||| || ||||||     
T  25594142 aattttatttaaaaaccagatcactgctcaagacaaacagagatcggtgattcagagaataaaaataaaatgcgtcgtatataggcggaacacccgaaag 25594241  T
Q  536 taaacaccttaaaa 549  Q
    |||||||| |||||    
T  25594242 taaacaccataaaa 25594255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 430 - 631
Target Start/End: Original strand, 48892981 - 48893181
Alignment:
Q  430 acaacaaattttatttaacaaccagatccctgctcaagacgaacagagaccagtgaatcatagaatacnnnnnnnnggcgtcgtatataggcggagcatc 529  Q
    |||| |||||||||| |||||| |||||||||||||||||||||| ||||   |||| |  |||||||        |  | |||||||| | ||| ||||    
T  48892981 acaataaattttattaaacaactagatccctgctcaagacgaacaaagacagatgaaactgagaatacaaacaaacgatgccgtatataagaggaacatc 48893080  T
Q  530 cgaaaataaacaccttaaaagacaccccctagcaccacactcatcaaaatacatgtcaccgtctaaaacagacgccttcacgaaaacgaccactgtaaaa 629  Q
    ||||||||||||| |||||| |||||||  |  || |||| || ||||||||||||||||  |||||| |||| |||| || |||||||  || ||||||    
T  48893081 cgaaaataaacactttaaaa-acacccctgaagacaacacccaccaaaatacatgtcaccacctaaaagagactcctttacaaaaacgattacggtaaaa 48893179  T
Q  630 ac 631  Q
    ||    
T  48893180 ac 48893181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 434 - 485
Target Start/End: Original strand, 823029 - 823080
Alignment:
Q  434 caaattttatttaacaaccagatccctgctcaagacgaacagagaccagtga 485  Q
    ||||||||||| || ||||||||| |||||||||||||||||||||| ||||    
T  823029 caaattttattaaaaaaccagatcgctgctcaagacgaacagagaccggtga 823080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 428 - 479
Target Start/End: Complemental strand, 14893385 - 14893334
Alignment:
Q  428 aaacaacaaattttatttaacaaccagatccctgctcaagacgaacagagac 479  Q
    ||||||||||||||||| |||||||||||  |||||||||| ||||||||||    
T  14893385 aaacaacaaattttattaaacaaccagataactgctcaagatgaacagagac 14893334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 428 - 474
Target Start/End: Original strand, 33143578 - 33143624
Alignment:
Q  428 aaacaacaaattttatttaacaaccagatccctgctcaagacgaaca 474  Q
    ||||||||||||||||| |||||||||||| ||||||||| ||||||    
T  33143578 aaacaacaaattttattaaacaaccagatctctgctcaaggcgaaca 33143624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 513 - 614
Target Start/End: Complemental strand, 14194300 - 14194200
Alignment:
Q  513 tatataggcggagcatccgaaaataaacaccttaaaagacaccccctagcaccacactcatcaaaatacatgtcaccgtctaaaacagacgccttcacga 612  Q
    |||||||||||| |||||||||||||||| | ||||| |||| |   || ||||||| || ||||||||| ||||||  ||||||||||| || ||||||    
T  14194300 tatataggcggaacatccgaaaataaacatcctaaaa-acactcatgaggaccacacccaccaaaatacacgtcaccacctaaaacagactccatcacga 14194202  T
Q  613 aa 614  Q
    ||    
T  14194201 aa 14194200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 574 - 634
Target Start/End: Complemental strand, 37123691 - 37123631
Alignment:
Q  574 caaaatacatgtcaccgtctaaaacagacgccttcacgaaaacgaccactgtaaaaacgat 634  Q
    |||||||||  ||||| | ||||| ||||  ||||||||||||||||||||||||||||||    
T  37123691 caaaatacacatcaccatataaaatagacttcttcacgaaaacgaccactgtaaaaacgat 37123631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 478
Target Start/End: Complemental strand, 27399437 - 27399394
Alignment:
Q  435 aaattttatttaacaaccagatccctgctcaagacgaacagaga 478  Q
    ||||||||||||| | ||||||||||||||||||| ||||||||    
T  27399437 aaattttatttaaaatccagatccctgctcaagacaaacagaga 27399394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 592 - 634
Target Start/End: Original strand, 14755051 - 14755093
Alignment:
Q  592 ctaaaacagacgccttcacgaaaacgaccactgtaaaaacgat 634  Q
    ||||||||||| ||||||||||| |||||| ||||||||||||    
T  14755051 ctaaaacagaccccttcacgaaagcgaccattgtaaaaacgat 14755093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 592 - 634
Target Start/End: Original strand, 28937502 - 28937544
Alignment:
Q  592 ctaaaacagacgccttcacgaaaacgaccactgtaaaaacgat 634  Q
    ||||||||||| |||||||||||  ||||||||||||||||||    
T  28937502 ctaaaacagaccccttcacgaaagtgaccactgtaaaaacgat 28937544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 592 - 633
Target Start/End: Complemental strand, 32010053 - 32010012
Alignment:
Q  592 ctaaaacagacgccttcacgaaaacgaccactgtaaaaacga 633  Q
    ||||||||||| ||||||||||||||||| ||| ||||||||    
T  32010053 ctaaaacagactccttcacgaaaacgacctctgaaaaaacga 32010012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 452 - 480
Target Start/End: Complemental strand, 7105278 - 7105250
Alignment:
Q  452 cagatccctgctcaagacgaacagagacc 480  Q
    |||||||||||||||||||||||||||||    
T  7105278 cagatccctgctcaagacgaacagagacc 7105250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 3e-25; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 429 - 634
Target Start/End: Complemental strand, 32882817 - 32882616
Alignment:
Q  429 aacaacaaattttatttaacaaccagatccctgctcaagacgaacagagaccagtgaatcatagaatacnnnnnnnnggcgtcgtatataggcggagcat 528  Q
    |||| ||||||||||| ||||| || ||||||||||||||||||||||   | | |||||| | |||||        |||| ||||||||||| || ||     
T  32882817 aacagcaaattttattaaacaatcacatccctgctcaagacgaacaga---ctg-gaatcagaaaatacaaactaaaggcgccgtatataggcagaacac 32882722  T
Q  529 ccgaaaataaacaccttaaaagacaccccctagcaccacactcatcaaaatacatgtcaccgtctaaaacagacgccttcacgaaaacgaccactgtaaa 628  Q
    ||||||||||||||| |||||||||||||| || || |||| || ||||||| |  |||||| ||||||| ||| ||||||||||||||| |||||||||    
T  32882721 ccgaaaataaacaccctaaaagacacccccgaggacaacacccaccaaaatatacatcaccgcctaaaactgactccttcacgaaaacgagcactgtaaa 32882622  T
Q  629 aacgat 634  Q
     |||||    
T  32882621 cacgat 32882616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 428 - 549
Target Start/End: Original strand, 9312966 - 9313087
Alignment:
Q  428 aaacaacaaattttatttaacaaccagatccctgctcaagacgaacagagaccagtgaatcatagaatacnnnnnnnnggcgtcgtatataggcggagca 527  Q
    ||||||||||||||||| |||||| ||||| |||||||||||||||||||||| ||||| | || |||||        ||||||||||||||||||| ||    
T  9312966 aaacaacaaattttattaaacaacgagatctctgctcaagacgaacagagaccggtgaaacttataatacaatcaaaaggcgtcgtatataggcggaaca 9313065  T
Q  528 tccgaaaataaacaccttaaaa 549  Q
     ||||||||||||||| |||||    
T  9313066 cccgaaaataaacaccctaaaa 9313087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 428 - 633
Target Start/End: Complemental strand, 34775326 - 34775122
Alignment:
Q  428 aaacaacaaattttatttaacaaccagatccctgctcaagacgaacagagaccagtgaatcatagaatacnnnnnnnnggcgtcgtatataggcggagca 527  Q
    ||||||||||||||||||||  | ||| ||| ||||||||||||||| |||||  | || |  |||||||        |||| |||||||||||||| ||    
T  34775326 aaacaacaaattttatttaatcatcaggtcc-tgctcaagacgaacaaagaccgataaagctgagaatacaaactaaaggcgccgtatataggcggaaca 34775228  T
Q  528 tccgaaaataaacaccttaaaagacaccccctagcaccacactcatcaaaatacatgtcaccgtctaaaacagacgccttcacgaaaacgaccactgtaa 627  Q
     ||||||||||||||||||||| | |||    || || |||| || ||||||||| |||| |  ||||||||||| |||||||||||||||| |||||||    
T  34775227 cccgaaaataaacaccttaaaaaataccaatgaggacaacacccaccaaaatacacgtcatcacctaaaacagactccttcacgaaaacgacaactgtaa 34775128  T
Q  628 aaacga 633  Q
    ||||||    
T  34775127 aaacga 34775122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 511 - 622
Target Start/End: Complemental strand, 46768548 - 46768437
Alignment:
Q  511 cgtatataggcggagcatccgaaaataaacaccttaaaagacaccccctagcaccacactcatcaaaatacatgtcaccgtctaaaacagacgccttcac 610  Q
    ||||| |||||||| || ||||||||||||||| ||||| |||||||| || || |||| || |||||| || ||||||  ||||||||||| |||||||    
T  46768548 cgtatgtaggcggaacacccgaaaataaacaccctaaaaaacacccccgaggacaacacccaccaaaattcacgtcaccacctaaaacagactccttcac 46768449  T
Q  611 gaaaacgaccac 622  Q
    ||||||||||||    
T  46768448 gaaaacgaccac 46768437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 429 - 556
Target Start/End: Complemental strand, 27905885 - 27905759
Alignment:
Q  429 aacaacaaattttatttaacaaccagatccctgctcaagacgaacagagaccagtgaatcatagaatacnnnnnnnnggcgtcgtatataggcggagcat 528  Q
    ||||||||| |||||| ||||||||||||||||||||||| ||| ||||||| |||||||| ||| |||        ||||||||||||||| ||| ||     
T  27905885 aacaacaaaatttattaaacaaccagatccctgctcaagaagaatagagaccggtgaatcagagactacaaactagaggcgtcgtatataggtggaaca- 27905787  T
Q  529 ccgaaaataaacaccttaaaagacaccc 556  Q
    |  |||||||||||| ||||||||||||    
T  27905786 caaaaaataaacaccataaaagacaccc 27905759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 428 - 634
Target Start/End: Original strand, 10785087 - 10785293
Alignment:
Q  428 aaacaacaaattttatttaacaaccagatccctgctcaagacgaacagagaccagtgaatcatagaatacnnnnnnnnggcgtcgtatataggcggagca 527  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||| ||||||  || || |  |||||||          || |||| | || |||| ||    
T  10785087 aaacatcaaatttcatttaacaaccagatccctgctcaagacgaatagagacgggtaaaactgagaatacaaactaaaaacgccgtacaaagtcggaaca 10785186  T
Q  528 tccgaaaataaacaccttaaaagacaccccctagcaccacactcatcaaaatacatgtcaccgtctaaaacagacgccttcacgaaaacgaccactgtaa 627  Q
     || || ||||||||||||||| ||||||   || || |||| ||||||||||||||| | |   |||||||||| ||||||||||||||||  ||| ||    
T  10785187 cccaaatataaacaccttaaaaaacacccttgaggacaacacccatcaaaatacatgttatcacttaaaacagactccttcacgaaaacgacatctgaaa 10785286  T
Q  628 aaacgat 634  Q
    |||||||    
T  10785287 aaacgat 10785293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 428 - 549
Target Start/End: Original strand, 11439646 - 11439767
Alignment:
Q  428 aaacaacaaattttatttaacaaccagatccctgctcaagacgaacagagaccagtgaatcatagaatacnnnnnnnnggcgtcgtatataggcggagca 527  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||| ||| | |||||    |||||||        |||| | ||||||| |||| ||    
T  11439646 aaacaacaaattttattaaacaaccagatctctgctcaagacgaacaaagatcggtgaaaatgagaatacaaacaaaaggcgacatatatagacggaaca 11439745  T
Q  528 tccgaaaataaacaccttaaaa 549  Q
    |||||||||||||||| |||||    
T  11439746 tccgaaaataaacaccctaaaa 11439767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 434 - 496
Target Start/End: Complemental strand, 10605144 - 10605082
Alignment:
Q  434 caaattttatttaacaaccagatccctgctcaagacgaacagagaccagtgaatcatagaata 496  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||  ||||| || ||||||    
T  10605144 caaattttatttaacaatcagatccctgctcaagacgaatagagactggtgaaacagagaata 10605082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 429 - 497
Target Start/End: Complemental strand, 9557362 - 9557293
Alignment:
Q  429 aacaacaaattttatttaacaaccagatccctgctcaagacg-aacagagaccagtgaatcatagaatac 497  Q
    ||||||||||||| || |||||||||||| |||||||||||| |||||||||| |||||||  |||||||    
T  9557362 aacaacaaattttgttaaacaaccagatctctgctcaagacgaaacagagaccggtgaatctgagaatac 9557293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 428 - 549
Target Start/End: Complemental strand, 27102637 - 27102516
Alignment:
Q  428 aaacaacaaattttatttaacaaccagatccctgctcaagacgaacagagaccagtgaatcatagaatacnnnnnnnnggcgtcgtatataggcggagca 527  Q
    ||||| ||||||||||| |||||||||||| ||| |||||||||||| ||||  ||||| |  |||||||        || | |||||||||||||| ||    
T  27102637 aaacagcaaattttattaaacaaccagatctctgttcaagacgaacaaagactggtgaacctgagaatacaaacaaaaggtgccgtatataggcggaaca 27102538  T
Q  528 tccgaaaataaacaccttaaaa 549  Q
     ||||||||||||||| |||||    
T  27102537 cccgaaaataaacaccctaaaa 27102516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 509 - 634
Target Start/End: Original strand, 32863253 - 32863378
Alignment:
Q  509 gtcgtatataggcggagcatccgaaaataaacaccttaaaagacaccccctagcaccacactcatcaaaatacatgtcaccgtctaaaacagacgccttc 608  Q
    |||||||||||||||| || | |||||||||||||   ||| ||||||   || || |||| || ||| ||||| ||||||| ||||||||||  ||| |    
T  32863253 gtcgtatataggcggaacacctgaaaataaacaccaagaaaaacacccaagaggacaacacccaccaacatacacgtcaccgcctaaaacagaatcctcc 32863352  T
Q  609 acgaaaacgaccactgtaaaaacgat 634  Q
    ||||||||||||| |||||| |||||    
T  32863353 acgaaaacgaccattgtaaacacgat 32863378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 428 - 486
Target Start/End: Original strand, 7451887 - 7451945
Alignment:
Q  428 aaacaacaaattttatttaacaaccagatccctgctcaagacgaacagagaccagtgaa 486  Q
    ||||| ||||| ||||| |||||| ||||| |||||||||||||||||||||| |||||    
T  7451887 aaacagcaaatattattaaacaactagatctctgctcaagacgaacagagaccggtgaa 7451945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 429 - 479
Target Start/End: Original strand, 30762016 - 30762066
Alignment:
Q  429 aacaacaaattttatttaacaaccagatccctgctcaagacgaacagagac 479  Q
    |||| |||||||||||||| || ||||||| ||||||||||||||||||||    
T  30762016 aacagcaaattttatttaaaaatcagatccttgctcaagacgaacagagac 30762066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 445 - 479
Target Start/End: Complemental strand, 52278718 - 52278684
Alignment:
Q  445 taacaaccagatccctgctcaagacgaacagagac 479  Q
    |||||||||||||||||||||||||||||||||||    
T  52278718 taacaaccagatccctgctcaagacgaacagagac 52278684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 428 - 480
Target Start/End: Original strand, 12636085 - 12636137
Alignment:
Q  428 aaacaacaaattttatttaacaaccagatccctgctcaagacgaacagagacc 480  Q
    ||||||||||||||||||||| | | | ||||| |||||||||||||||||||    
T  12636085 aaacaacaaattttatttaactatcgggtccctactcaagacgaacagagacc 12636137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 429 - 481
Target Start/End: Complemental strand, 34159097 - 34159045
Alignment:
Q  429 aacaacaaattttatttaacaaccagatccctgctcaagacgaacagagacca 481  Q
    ||||||||| |||||| ||||| |||||||||||||||||| || ||||||||    
T  34159097 aacaacaaaatttattaaacaatcagatccctgctcaagacaaatagagacca 34159045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 434 - 549
Target Start/End: Original strand, 38546815 - 38546930
Alignment:
Q  434 caaattttatttaacaaccagatccctgctcaagacgaacagagaccagtgaatcatagaatacnnnnnnnnggcgtcgtatataggcggagcatccgaa 533  Q
    |||||||||||||| |||  ||||  ||||||||||||||| ||| |||||| ||| ||| |||         | |||||||||||||||| ||||||||    
T  38546815 caaattttatttaaaaactcgatcattgctcaagacgaacaaagatcagtgattcagagagtacaaactaaatgtgtcgtatataggcggaacatccgaa 38546914  T
Q  534 aataaacaccttaaaa 549  Q
    |||||| ||| |||||    
T  38546915 aataaaaaccataaaa 38546930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 428 - 486
Target Start/End: Complemental strand, 4431130 - 4431072
Alignment:
Q  428 aaacaacaaattttatttaacaaccagatccctgctcaagacgaacagagaccagtgaa 486  Q
    ||||| ||||||||||| ||||| || ||| |||||||||||||| ||||||| |||||    
T  4431130 aaacagcaaattttattaaacaaacatatctctgctcaagacgaatagagaccggtgaa 4431072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 474
Target Start/End: Complemental strand, 16577718 - 16577673
Alignment:
Q  429 aacaacaaattttatttaacaaccagatccctgctcaagacgaaca 474  Q
    |||| |||||||||||||||||||| ||| | ||||||||||||||    
T  16577718 aacatcaaattttatttaacaaccaaatctccgctcaagacgaaca 16577673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 574 - 629
Target Start/End: Original strand, 41126261 - 41126317
Alignment:
Q  574 caaaatacatgtcaccgtctaaaacagacgccttcacgaaaac-gaccactgtaaaa 629  Q
    |||||||||| |||||  ||||||||||||| |||||||||||  ||||||||||||    
T  41126261 caaaatacatatcaccacctaaaacagacgcattcacgaaaacaaaccactgtaaaa 41126317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 434 - 478
Target Start/End: Complemental strand, 46768626 - 46768582
Alignment:
Q  434 caaattttatttaacaaccagatccctgctcaagacgaacagaga 478  Q
    ||||||||||| |||||||| || | |||||||||||||||||||    
T  46768626 caaattttattaaacaaccaaattcttgctcaagacgaacagaga 46768582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 4e-24; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 429 - 602
Target Start/End: Original strand, 26405175 - 26405347
Alignment:
Q  429 aacaacaaattttatttaacaaccagatccctgctcaagacgaacagagaccagtgaatcatagaatacnnnnnnnnggcgtcgtatataggcggagcat 528  Q
    |||||||||||||||| |||||||||||  |||||||||||||||| ||||| ||||| |  |||||||        |||||||||||||| |||| ||     
T  26405175 aacaacaaattttattaaacaaccagatttctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaggcgtcgtatatagtcggaacac 26405274  T
Q  529 ccgaaaataaacaccttaaaagacaccccctagcaccacactcatcaaaatacatgtcaccgtctaaaacagac 602  Q
    ||||||||||||||||||||| |||||||  || || |||  || ||||||||| ||||||  |||||||||||    
T  26405275 ccgaaaataaacaccttaaaa-acacccctgaggacaacaaccaccaaaatacacgtcaccacctaaaacagac 26405347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 537 - 634
Target Start/End: Original strand, 21398054 - 21398151
Alignment:
Q  537 aaacaccttaaaagacaccccctagcaccacactcatcaaaatacatgtcaccgtctaaaacagacgccttcacgaaaacgaccactgtaaaaacgat 634  Q
    ||||||||||||| |||||||  || || ||||| |  |||||||| |||||| |||||||||||||||||||||||||| |||  ||||||||||||    
T  21398054 aaacaccttaaaaaacacccctgaggacaacacttacaaaaatacacgtcaccatctaaaacagacgccttcacgaaaacaacctttgtaaaaacgat 21398151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 428 - 633
Target Start/End: Original strand, 26045589 - 26045794
Alignment:
Q  428 aaacaacaaattttatttaacaaccagatccctgctcaagacgaacagagaccagtgaatcatagaatacnnnnnnnnggcgtcgtatataggcggagca 527  Q
    |||||| |||||||||| |||||| |||||  ||||||| ||||||||||||| |||||    || ||||        |||| ||||||||| |||| ||    
T  26045589 aaacaataaattttattaaacaactagatcaatgctcaaaacgaacagagaccggtgaagttgagcatacaaacaaaaggcgccgtatatagacggaaca 26045688  T
Q  528 tccgaaaataaacaccttaaaagacaccccctagcaccacactcatcaaaatacatgtcaccgtctaaaacagacgccttcacgaaaacgaccactgtaa 627  Q
    ||| |||||||||||| ||||| || ||||  || || |||| || |||||| || ||||||  |||||||||||  ||||| ||||| |||||| ||||    
T  26045689 tccaaaaataaacaccctaaaaaacgcccctgaggacaacacccaccaaaattcacgtcaccacctaaaacagacttcttcatgaaaatgaccacggtaa 26045788  T
Q  628 aaacga 633  Q
    ||||||    
T  26045789 aaacga 26045794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 529 - 634
Target Start/End: Original strand, 33109927 - 33110029
Alignment:
Q  529 ccgaaaataaacaccttaaaagacaccccctagcaccacactcatcaaaatacatgtcaccgtctaaaacagacgccttcacgaaaacgaccactgtaaa 628  Q
    |||||||||||||| ||||||   || |||||  || |||| || ||||||||| |||| |  |||||||| || |||||||||||||||||||||||||    
T  33109927 ccgaaaataaacactttaaaa---acaccctatgacaacacccaccaaaatacacgtcatcacctaaaacaaaccccttcacgaaaacgaccactgtaaa 33110023  T
Q  629 aacgat 634  Q
    ||||||    
T  33110024 aacgat 33110029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 429 - 634
Target Start/End: Complemental strand, 8297924 - 8297721
Alignment:
Q  429 aacaacaaattttatttaacaaccagatccctgctcaagacgaacagagaccagtgaatcatagaatacnnnnnnnnggcgtcgtatataggcggagcat 528  Q
    |||| ||||||||||| ||||| |||||| || ||||||||||||||||||| ||||| |  |||||||        ||||| ||| ||||||||| ||     
T  8297924 aacagcaaattttattgaacaatcagatctctactcaagacgaacagagaccggtgaaactgagaatac-aaaaaaaggcgttgtacataggcggaacac 8297826  T
Q  529 ccgaaaataaacaccttaaaagacaccccctagcaccacactcatcaaaatacatgtcaccgtctaaaacagacgccttcacgaaaacgaccactgtaaa 628  Q
    | ||||||| ||||| ||||| |||||||  || |  |||  || |||||||||  |||||  |||||||| || |||||| ||||| ||||| ||||||    
T  8297825 ctgaaaatacacaccctaaaa-acacccctgaggataacatccaccaaaatacacatcaccacctaaaacacactccttcaagaaaaagaccaatgtaaa 8297727  T
Q  629 aacgat 634  Q
    ||||||    
T  8297726 aacgat 8297721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 434 - 631
Target Start/End: Original strand, 13953878 - 13954077
Alignment:
Q  434 caaattttatttaacaaccagatccctgctcaagacgaacagagacc--agtgaatcatagaatacnnnnnnnnggcgtcgtatataggcggagcatccg 531  Q
    |||||||||||||||  |||| || ||||||||||||||||||||||   ||||| |  ||| |||        |||| |||||||||||||| || | |    
T  13953878 caaattttatttaacctccaggtctctgctcaagacgaacagagaccggtgtgaaactgagagtacaaactaaaggcgccgtatataggcggaacacctg 13953977  T
Q  532 aaaataaacaccttaaaagacaccccctagcaccacactcatcaaaatacatgtcaccgtctaaaacagacgccttcacgaaaacgaccactgtaaaaac 631  Q
    |||||||||||||||||| | ||||   || || || | || |||||||||||||| |  |||||||||||   |||| ||| ||||| |||||||||||    
T  13953978 aaaataaacaccttaaaaaatacccttgaggacaactcccaccaaaatacatgtcatctcctaaaacagactttttcatgaagacgactactgtaaaaac 13954077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 434 - 486
Target Start/End: Complemental strand, 25992450 - 25992398
Alignment:
Q  434 caaattttatttaacaaccagatccctgctcaagacgaacagagaccagtgaa 486  Q
    ||||| ||||| |||||||||||| |||||||||||||||||||||| |||||    
T  25992450 caaatattattaaacaaccagatctctgctcaagacgaacagagaccggtgaa 25992398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 429 - 468
Target Start/End: Original strand, 17853106 - 17853145
Alignment:
Q  429 aacaacaaattttatttaacaaccagatccctgctcaaga 468  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  17853106 aacaacaaattttatttaaaaaccagatccctgctcaaga 17853145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 428 - 474
Target Start/End: Original strand, 7194927 - 7194973
Alignment:
Q  428 aaacaacaaattttatttaacaaccagatccctgctcaagacgaaca 474  Q
    ||||| ||||||||||| ||||||||||||||| |||||||||||||    
T  7194927 aaacagcaaattttattaaacaaccagatccctactcaagacgaaca 7194973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 428 - 497
Target Start/End: Complemental strand, 23426755 - 23426686
Alignment:
Q  428 aaacaacaaattttatttaacaaccagatccctgctcaagacgaacagagaccagtgaatcatagaatac 497  Q
    ||||| |||||||||||||| || |||||  |||||||||| ||||||||||| |||| ||| |||||||    
T  23426755 aaacagcaaattttatttaaaaatcagattgctgctcaagaggaacagagaccggtgattcagagaatac 23426686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 574 - 634
Target Start/End: Original strand, 14302215 - 14302275
Alignment:
Q  574 caaaatacatgtcaccgtctaaaacagacgccttcacgaaaacgaccactgtaaaaacgat 634  Q
    ||||||||| ||||||  ||||||||||  ||||| |||||||||||| ||||||||||||    
T  14302215 caaaatacacgtcaccacctaaaacagattccttcgcgaaaacgaccaatgtaaaaacgat 14302275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 592 - 634
Target Start/End: Complemental strand, 25992302 - 25992260
Alignment:
Q  592 ctaaaacagacgccttcacgaaaacgaccactgtaaaaacgat 634  Q
    ||||||||||| ||||||||||| | |||||||||||||||||    
T  25992302 ctaaaacagaccccttcacgaaagcaaccactgtaaaaacgat 25992260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 444 - 486
Target Start/End: Complemental strand, 27713512 - 27713470
Alignment:
Q  444 ttaacaaccagatccctgctcaagacgaacagagaccagtgaa 486  Q
    |||| ||||||||||||| ||||||||||| ||||||||||||    
T  27713512 ttaaaaaccagatccctgttcaagacgaactgagaccagtgaa 27713470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 543
Target Start/End: Complemental strand, 7682930 - 7682893
Alignment:
Q  506 ggcgtcgtatataggcggagcatccgaaaataaacacc 543  Q
    ||||||||||||||||||| ||||||||||||| ||||    
T  7682930 ggcgtcgtatataggcggaacatccgaaaataagcacc 7682893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 555
Target Start/End: Original strand, 24071965 - 24072014
Alignment:
Q  506 ggcgtcgtatataggcggagcatccgaaaataaacaccttaaaagacacc 555  Q
    |||| |||||||||||||| || ||||||||||||| | |||||||||||    
T  24071965 ggcgccgtatataggcggaacacccgaaaataaacatcataaaagacacc 24072014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 429 - 497
Target Start/End: Complemental strand, 8731391 - 8731324
Alignment:
Q  429 aacaacaaattttatttaacaaccagatccctgctcaagacgaacagagaccagtgaatcatagaatac 497  Q
    |||| ||||||||||| || || |||||||||||||||||| |||||| ||| |||| ||| |||||||    
T  8731391 aacagcaaattttattaaa-aatcagatccctgctcaagacaaacagaaaccggtgattcagagaatac 8731324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 3e-22; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 428 - 633
Target Start/End: Original strand, 10248191 - 10248397
Alignment:
Q  428 aaacaacaaattttatttaacaaccagatccctgctcaagacgaacagagaccagtgaatcatagaatacnnnnnnnnggcgtcgtatataggcggagca 527  Q
    ||||||||||||||||||||| | ||| |||  ||||||||||||| || | || |||| |  |||||||        ||||||||||||||||||| ||    
T  10248191 aaacaacaaattttatttaaccatcaggtccgggctcaagacgaactgaaatcattgaaactgagaatacaacctaaaggcgtcgtatataggcggaaca 10248290  T
Q  528 tccgaaaataaa-caccttaaaagacaccccctagcaccacactcatcaaaatacatgtcaccgtctaaaacagacgccttcacgaaaacgaccactgta 626  Q
     || |||| ||| |||||||||| ||||||   || || |||| |  ||||||||| ||||||  |||||||| || |||||||||||||||||||||||    
T  10248291 ccctaaaaaaaaacaccttaaaaaacacccttgaggacaacacccgccaaaatacacgtcaccacctaaaacaaactccttcacgaaaacgaccactgta 10248390  T
Q  627 aaaacga 633  Q
    |||||||    
T  10248391 aaaacga 10248397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 435 - 634
Target Start/End: Original strand, 12197708 - 12197906
Alignment:
Q  435 aaattttatttaacaaccagatccctgctcaagacgaacagagaccagtgaatcatagaatacnnnnnnnnggcgtcgtatataggcggagcatccgaaa 534  Q
    ||||||||||||||||| |||||  ||||||||||||| ||||| | |||||||| |||||||        |||||||| |||||||||| ||   ||||    
T  12197708 aaattttatttaacaacgagatctatgctcaagacgaatagagatcggtgaatcagagaatacaaactaaaggcgtcgtctataggcggaacacgggaaa 12197807  T
Q  535 ataaacaccttaaaagacaccccctagcaccacactcatcaaaatacatgtcaccgtctaaaacagacgccttcacgaaaacgaccactgtaaaaacgat 634  Q
    ||||||||| ||||||||||| |   | || |||| ||  |||||||| ||||||  ||| |||||||||||||| ||| |||||||||  |||||||||    
T  12197808 ataaacaccctaaaagacacctctggggacaacac-cacaaaaatacacgtcaccacctacaacagacgccttcatgaacacgaccactaaaaaaacgat 12197906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 435 - 634
Target Start/End: Original strand, 12442136 - 12442334
Alignment:
Q  435 aaattttatttaacaaccagatccctgctcaagacgaacagagaccagtgaatcatagaatacnnnnnnnnggcgtcgtatataggcggagcatccgaaa 534  Q
    ||||||||||||||||| |||||  ||||||||||||| ||||| | |||||||| |||||||        |||||||| |||||||||| ||   ||||    
T  12442136 aaattttatttaacaacgagatctatgctcaagacgaatagagatcggtgaatcagagaatacaaactaaaggcgtcgtctataggcggaacacgggaaa 12442235  T
Q  535 ataaacaccttaaaagacaccccctagcaccacactcatcaaaatacatgtcaccgtctaaaacagacgccttcacgaaaacgaccactgtaaaaacgat 634  Q
    ||||||||| ||||||||||| |   | || |||| ||  |||||||| ||||||  ||| |||||||||||||| ||| |||||||||  |||||||||    
T  12442236 ataaacaccctaaaagacacctctggggacaacac-cacaaaaatacacgtcaccacctacaacagacgccttcatgaacacgaccactaaaaaaacgat 12442334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 506 - 634
Target Start/End: Original strand, 17656440 - 17656568
Alignment:
Q  506 ggcgtcgtatataggcggagcatccgaaaataaacaccttaaaagacaccccctagcaccacactcatcaaaatacatgtcaccgtctaaaacagacgcc 605  Q
    |||||||||||||| |||| || |||||||| |||||| ||||| ||||||   || || |||| || |||||| || |||||| |||||||||||| ||    
T  17656440 ggcgtcgtatatagacggaacacccgaaaattaacaccctaaaa-acacccttgaggacaacacccaccaaaattcacgtcaccatctaaaacagactcc 17656538  T
Q  606 ttcacg-aaaacgaccactgtaaaaacgat 634  Q
    |||| | ||||||||||||| |||||||||    
T  17656539 ttcaagaaaaacgaccactgcaaaaacgat 17656568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 566 - 634
Target Start/End: Original strand, 43312402 - 43312470
Alignment:
Q  566 acactcatcaaaatacatgtcaccgtctaaaacagacgccttcacgaaaacgaccactgtaaaaacgat 634  Q
    |||| |||||||||||||||||||  ||||| ||||| ||| ||| |||||||||||||||||||||||    
T  43312402 acacccatcaaaatacatgtcaccacctaaatcagactcctacacaaaaacgaccactgtaaaaacgat 43312470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 428 - 472
Target Start/End: Original strand, 2613173 - 2613217
Alignment:
Q  428 aaacaacaaattttatttaacaaccagatccctgctcaagacgaa 472  Q
    ||||| ||||||||||||||||| ||||||||| |||||||||||    
T  2613173 aaacagcaaattttatttaacaatcagatccctactcaagacgaa 2613217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 429 - 631
Target Start/End: Original strand, 8862251 - 8862451
Alignment:
Q  429 aacaacaaattttatttaacaaccagatccctgctcaagacgaacagagaccagtgaatcatagaatacnnnnnnnnggcgtcgtatataggcggagcat 528  Q
    |||||||||||||| | | ||||||||||||| ||||||||||||| ||| | |||||| | ||  |||        |||| ||||||||| |||| |||    
T  8862251 aacaacaaattttactaagcaaccagatccctactcaagacgaaca-agatcggtgaatgagag--tacaaacaaaaggcgccgtatatagacggaacat 8862347  T
Q  529 ccgaaaa-taaacaccttaaaagacaccccctagcaccacactcatcaaaatacatgtcaccgtctaaaacagacgccttcacgaaaacgaccactgtaa 627  Q
    ||||||| |||||||| ||||| |||||||  || || |||| ||  |||||||| ||||||  ||||||| ||| | | ||||| ||| |||| |||||    
T  8862348 ccgaaaaataaacaccataaaaaacaccccgaaggacaacacccacaaaaatacacgtcaccacctaaaactgactcttacacgagaacaaccattgtaa 8862447  T
Q  628 aaac 631  Q
    ||||    
T  8862448 aaac 8862451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 428 - 480
Target Start/End: Original strand, 43312281 - 43312333
Alignment:
Q  428 aaacaacaaattttatttaacaaccagatccctgctcaagacgaacagagacc 480  Q
    ||||||||||||||||||||| ||| | || |||||||||||||| |||||||    
T  43312281 aaacaacaaattttatttaaccacctggtctctgctcaagacgaatagagacc 43312333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 574 - 634
Target Start/End: Original strand, 22325867 - 22325927
Alignment:
Q  574 caaaatacatgtcaccgtctaaaacagacgccttcacgaaaacgaccactgtaaaaacgat 634  Q
    ||||||| | |||||| | |||||||||| |||| || |||||||||| ||||||||||||    
T  22325867 caaaatataggtcaccatataaaacagactccttaacaaaaacgaccattgtaaaaacgat 22325927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 1e-21; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 434 - 555
Target Start/End: Original strand, 17278094 - 17278215
Alignment:
Q  434 caaattttatttaacaaccagatccctgctcaagacgaacagagaccagtgaatcatagaatacnnnnnnnnggcgtcgtatataggcggagcatccgaa 533  Q
    |||||||||||||| ||||||||| ||||| |||| ||||||||||| |||| ||| |||||||        ||||||||||||||||||| || |||||    
T  17278094 caaattttatttaaaaaccagatcgctgcttaagatgaacagagaccggtgattcagagaatacaatctaaaggcgtcgtatataggcggaacacccgaa 17278193  T
Q  534 aataaacaccttaaaagacacc 555  Q
    |||||||| | |||||||||||    
T  17278194 aataaacatcataaaagacacc 17278215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 429 - 486
Target Start/End: Original strand, 3880239 - 3880296
Alignment:
Q  429 aacaacaaattttatttaacaaccagatccctgctcaagacgaacagagaccagtgaa 486  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||    
T  3880239 aacaacaaattttattaaacaatcagatccctgctcaagacgaacagagaccggtgaa 3880296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 434 - 479
Target Start/End: Original strand, 32933979 - 32934024
Alignment:
Q  434 caaattttatttaacaaccagatccctgctcaagacgaacagagac 479  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||    
T  32933979 caaattttatttaacaaccagattcctgctcaagatgaacagagac 32934024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 428 - 478
Target Start/End: Original strand, 20701424 - 20701473
Alignment:
Q  428 aaacaacaaattttatttaacaaccagatccctgctcaagacgaacagaga 478  Q
    |||| |||||||||||| |||||||| |||||| |||||||||||||||||    
T  20701424 aaacgacaaattttattaaacaaccaaatccct-ctcaagacgaacagaga 20701473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 480
Target Start/End: Original strand, 15120235 - 15120280
Alignment:
Q  435 aaattttatttaacaaccagatccctgctcaagacgaacagagacc 480  Q
    |||||||||||||||||| |||||||| ||||| | ||||||||||    
T  15120235 aaattttatttaacaaccggatccctggtcaagtcaaacagagacc 15120280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 428 - 480
Target Start/End: Complemental strand, 13423817 - 13423765
Alignment:
Q  428 aaacaacaaattttatttaacaaccagatccctgctcaagacgaacagagacc 480  Q
    ||||| ||||||||||||||| |  || ||||| |||||||||||||||||||    
T  13423817 aaacagcaaattttatttaaccattaggtccctcctcaagacgaacagagacc 13423765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 510 - 633
Target Start/End: Complemental strand, 49747901 - 49747778
Alignment:
Q  510 tcgtatataggcggagcatccgaaaataaacaccttaaaagacaccccctagcaccacactcatcaaaatacatgtcaccgtctaaaacagacgccttca 609  Q
    ||||||||| ||||| ||||| |||||||||||| ||||| ||||| |  || || |||| || |||||| |||||||||  ||||||||||| | ||||    
T  49747901 tcgtatatatgcggaacatccaaaaataaacaccataaaaaacacctctgaggacaacacccaccaaaattcatgtcaccacctaaaacagactctttca 49747802  T
Q  610 cgaaaacgaccactgtaaaaacga 633  Q
    |||||||||||| |||||||||||    
T  49747801 cgaaaacgaccattgtaaaaacga 49747778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 434 - 480
Target Start/End: Original strand, 19814849 - 19814895
Alignment:
Q  434 caaattttatttaacaaccagatccctgctcaagacgaacagagacc 480  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  19814849 caaattttatttaacaaccagatccctgctcaagacgaacagagacc 19814895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 428 - 630
Target Start/End: Original strand, 38636860 - 38637061
Alignment:
Q  428 aaacaacaaattttatttaacaaccagatccctgctcaagacgaacagagaccagtgaatcatagaatacnnnnnnnnggcgtcgtatataggcggagca 527  Q
    ||||| ||||||||||| ||||||||| |||| | ||| |||||||||||||| |||||    ||| |||        |||| ||||| |||||||| ||    
T  38636860 aaacagcaaattttattaaacaaccaggtccccgttcaggacgaacagagaccggtgaaaatgagactacaaacaagaggcgccgtat-taggcggaaca 38636958  T
Q  528 tccgaaaataaacaccttaaaagacaccccctagcaccacactcatcaaaatacatgtcaccgtctaaaacagacgccttcacgaaaacgaccactgtaa 627  Q
     | ||||||||||||||||||  | |||||| || || |||| ||  |||||||||||||||  |||||||| || ||||||||||||| ||| ||||||    
T  38636959 cctgaaaataaacaccttaaataaaacccccgaggacaacacccacgaaaatacatgtcaccacctaaaacaaactccttcacgaaaacaaccgctgtaa 38637058  T
Q  628 aaa 630  Q
    |||    
T  38637059 aaa 38637061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 428 - 634
Target Start/End: Original strand, 41117594 - 41117799
Alignment:
Q  428 aaacaacaaattttatttaacaaccagatccctgctcaagacgaacagagaccagtgaatcatagaatacnnnnnnnnggcgtcgtatataggcggagca 527  Q
    ||||||||||||||||| |||||| ||||| |||||||||||||||||||||  |||||    ||| |||        ||| ||||||||||||||| ||    
T  41117594 aaacaacaaattttattaaacaactagatctctgctcaagacgaacagagacaggtgaaattgagactacaaacaagaggcatcgtatataggcggaaca 41117693  T
Q  528 tccgaaaataaacaccttaaaagacaccccctagcaccacactcatcaaaatacatgtcaccgtctaaaacagacgccttcacgaaaacgaccactgtaa 627  Q
     ||||||||||||||| ||||  ||| ||   || || |||| || |||||||||| |||||  ||| ||||||| | | ||||||||| |||  |||||    
T  41117694 cccgaaaataaacaccctaaataaca-ccatgaggacaacacccaccaaaatacatatcaccacctagaacagactcatgcacgaaaacaaccgttgtaa 41117792  T
Q  628 aaacgat 634  Q
    |||||||    
T  41117793 aaacgat 41117799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 574 - 634
Target Start/End: Original strand, 22810932 - 22810992
Alignment:
Q  574 caaaatacatgtcaccgtctaaaacagacgccttcacgaaaacgaccactgtaaaaacgat 634  Q
    ||||||||| ||||||  |||||||||||  |||||||||| |||||||||||||||||||    
T  22810932 caaaatacacgtcacctcctaaaacagactgcttcacgaaaccgaccactgtaaaaacgat 22810992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 431 - 486
Target Start/End: Complemental strand, 42719608 - 42719553
Alignment:
Q  431 caacaaattttatttaacaaccagatccctgctcaagacgaacagagaccagtgaa 486  Q
    |||||||||||||| ||||| || |||||||||||||||||| ||||||| |||||    
T  42719608 caacaaattttattaaacaatcaaatccctgctcaagacgaatagagaccggtgaa 42719553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 428 - 480
Target Start/End: Complemental strand, 9262898 - 9262846
Alignment:
Q  428 aaacaacaaattttatttaacaaccagatccctgctcaagacgaacagagacc 480  Q
    ||||| ||||||||||| |||||||| ||||| |||||||||||||| |||||    
T  9262898 aaacagcaaattttattaaacaaccaaatccccgctcaagacgaacaaagacc 9262846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 511 - 634
Target Start/End: Original strand, 19311075 - 19311197
Alignment:
Q  511 cgtatataggcggagcatccgaaaataaacaccttaaaagacaccccctagcaccacactcatcaaaatacatgtcaccgtctaaaacagacgccttcac 610  Q
    |||| ||||||||| ||||||||| |||||||| ||||| || ||||   | |  |||| || ||||||||| ||||||  |  |||||||  |||||||    
T  19311075 cgtaaataggcggaacatccgaaattaaacaccctaaaa-actcccctggggataacacccaccaaaatacacgtcaccaccataaacagattccttcac 19311173  T
Q  611 gaaaacgaccactgtaaaaacgat 634  Q
    |||||||| |||||||||||||||    
T  19311174 gaaaacgagcactgtaaaaacgat 19311197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 434 - 497
Target Start/End: Original strand, 20632129 - 20632192
Alignment:
Q  434 caaattttatttaacaaccagatccctgctcaagacgaacagagaccagtgaatcatagaatac 497  Q
    |||||||||||||| || ||||| |||||| ||||||||| |||||| |||| ||| |||||||    
T  20632129 caaattttatttaaaaaacagattcctgcttaagacgaactgagaccggtgattcagagaatac 20632192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 434 - 549
Target Start/End: Complemental strand, 28967323 - 28967209
Alignment:
Q  434 caaattttatttaacaaccagatccctgctcaagacgaacagagaccagtgaatcatagaatacnnnnnnnnggcgtcgtatataggcggagcatccgaa 533  Q
    |||||||||||||| ||||||||  |||||||||||||||||||| | ||||| || | |||||        ||||  ||||||||||||| || | |||    
T  28967323 caaattttatttaa-aaccagatttctgctcaagacgaacagagatcggtgaaacagataatacaaacgaaaggcgctgtatataggcggaacacctgaa 28967225  T
Q  534 aataaacaccttaaaa 549  Q
    |||||||||| |||||    
T  28967224 aataaacaccctaaaa 28967209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 430 - 476
Target Start/End: Original strand, 2061460 - 2061506
Alignment:
Q  430 acaacaaattttatttaacaaccagatccctgctcaagacgaacaga 476  Q
    ||||||||||||||| ||||  ||||||||||| |||||||||||||    
T  2061460 acaacaaattttattaaacagtcagatccctgcccaagacgaacaga 2061506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 434 - 480
Target Start/End: Original strand, 21983507 - 21983552
Alignment:
Q  434 caaattttatttaacaaccagatccctgctcaagacgaacagagacc 480  Q
    ||||||||||| || || |||||||||||||||||||||||||||||    
T  21983507 caaattttattaaa-aatcagatccctgctcaagacgaacagagacc 21983552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 428 - 478
Target Start/End: Complemental strand, 52009280 - 52009230
Alignment:
Q  428 aaacaacaaattttatttaacaaccagatccctgctcaagacgaacagaga 478  Q
    ||||| ||||||||||| ||| ||||||||||||| ||||||||| |||||    
T  52009280 aaacagcaaattttattaaactaccagatccctgcccaagacgaatagaga 52009230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 470
Target Start/End: Complemental strand, 28377944 - 28377903
Alignment:
Q  429 aacaacaaattttatttaacaaccagatccctgctcaagacg 470  Q
    ||||||||||||||||||| ||||| |||||| |||||||||    
T  28377944 aacaacaaattttatttaaaaaccaaatccctactcaagacg 28377903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 429 - 497
Target Start/End: Original strand, 35947934 - 35948002
Alignment:
Q  429 aacaacaaattttatttaacaaccagatccctgctcaagacgaacagagaccagtgaatcatagaatac 497  Q
    |||| ||||| ||||| ||||||||||||| |||| |||||||||| | || ||||||||  |||||||    
T  35947934 aacatcaaatattattaaacaaccagatccttgcttaagacgaacatatactagtgaatctgagaatac 35948002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 510 - 542
Target Start/End: Complemental strand, 46487653 - 46487621
Alignment:
Q  510 tcgtatataggcggagcatccgaaaataaacac 542  Q
    ||||||||||||||| |||||||||||||||||    
T  46487653 tcgtatataggcggaacatccgaaaataaacac 46487621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 434 - 634
Target Start/End: Complemental strand, 3478797 - 3478599
Alignment:
Q  434 caaattttatttaacaaccagatccctgctcaagacgaacagagaccagtgaatcatagaatacnnnnnnnn-ggcgtcgtatataggcggagcatccga 532  Q
    |||||||||||||||||||||||||||| ||||||| |||||||||| |||||  | ||| | |         |||| |||||||||||||| || ||||    
T  3478797 caaattttatttaacaaccagatccctgatcaagacaaacagagaccggtgaa--agagagtgcaacctgaaaggcgccgtatataggcggaacacccga 3478700  T
Q  533 aaataaacaccttaaaagacaccccctagcaccacactcatcaaaatacatgtcaccgtctaaaacagacgccttcacgaaaacgaccactgtaaaaacg 632  Q
    ||||||||||| |||||||||  ||  ||||| |||  || ||||| ||| ||||||  || ||||||||| ||||||||| |||| |||||||||| ||    
T  3478699 aaataaacaccctaaaagacaatccagagcacaacatccaccaaaaaacaagtcaccaactcaaacagacgtcttcacgaatacga-cactgtaaaagcg 3478601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 428 - 478
Target Start/End: Original strand, 6726045 - 6726095
Alignment:
Q  428 aaacaacaaattttatttaacaaccagatccctgctcaagacgaacagaga 478  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  6726045 aaacaacaaattttattaaacaaccagatctctgctcaagacgaacagaga 6726095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 435 - 630
Target Start/End: Complemental strand, 33719413 - 33719219
Alignment:
Q  435 aaattttatttaacaaccagatccctgctcaagacgaacagagaccagtgaatcatagaatacnnnnnnnnggcgtcgtatataggcggagcatccgaaa 534  Q
    |||||||||| ||||||||||||||||||||||||||||||||| | ||||| |  |||||||        ||||  | ||||||||||| ||| |||||    
T  33719413 aaattttattaaacaaccagatccctgctcaagacgaacagagatcggtgaaactgagaatacaaacaaacggcgctgaatataggcggaacat-cgaaa 33719315  T
Q  535 ataaacaccttaaaagacaccccctagcaccacactcatcaaaatacatgtcaccgtctaaaacagacgccttcac-gaaaacgaccactgtaaaaa 630  Q
     |||||||| ||||| |||| |   || || |||| || |||||||| | |||||| ||||||| ||| |||||||  ||||||||| |||||||||    
T  33719314 gtaaacaccctaaaa-acactcatgaggacaacacccaccaaaatacctatcaccgcctaaaaccgactccttcacaaaaaacgacctctgtaaaaa 33719219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 428 - 486
Target Start/End: Complemental strand, 44756022 - 44755964
Alignment:
Q  428 aaacaacaaattttatttaacaaccagatccctgctcaagacgaacagagaccagtgaa 486  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||  ||| |||||||    
T  44756022 aaacaacaaattttattaaacaactagatccctgctcaagacgaacgaagatcagtgaa 44755964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 429 - 497
Target Start/End: Complemental strand, 9107605 - 9107537
Alignment:
Q  429 aacaacaaattttatttaacaaccagatccctgctcaagacgaacagagaccagtgaatcatagaatac 497  Q
    ||||||||||||||||||| ||||  ||||||||||||||||||||  || |||||| ||| |||||||    
T  9107605 aacaacaaattttatttaaaaacctaatccctgctcaagacgaacaatgatcagtgattcaaagaatac 9107537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 431 - 486
Target Start/End: Original strand, 47456703 - 47456757
Alignment:
Q  431 caacaaattttatttaacaaccagatccctgctcaagacgaacagagaccagtgaa 486  Q
    |||||||||||||| || ||||||||| |||||||||||||||||||||| |||||    
T  47456703 caacaaattttattaaa-aaccagatctctgctcaagacgaacagagaccggtgaa 47456757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 435 - 549
Target Start/End: Original strand, 42532892 - 42533006
Alignment:
Q  435 aaattttatttaacaaccagatccctgctcaagacgaacagagaccagtgaatcatagaatacnnnnnnnnggcgtcgtatataggcggagcatccgaaa 534  Q
    ||||||||||  ||||||| |||||||||||||||||||||||||| ||| | |  |||||||        |||| |||||||||||||| || | | ||    
T  42532892 aaattttattagacaaccaaatccctgctcaagacgaacagagaccggtggaactgagaatacaaccaaaaggcgccgtatataggcggaacacctggaa 42532991  T
Q  535 ataaacaccttaaaa 549  Q
    ||||||||| |||||    
T  42532992 ataaacaccctaaaa 42533006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 429 - 478
Target Start/End: Original strand, 9427706 - 9427754
Alignment:
Q  429 aacaacaaattttatttaacaaccagatccctgctcaagacgaacagaga 478  Q
    |||||||||||| |||||| |||||||||| |||||||||||||||||||    
T  9427706 aacaacaaattt-atttaaaaaccagatccttgctcaagacgaacagaga 9427754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 432 - 480
Target Start/End: Original strand, 26385790 - 26385838
Alignment:
Q  432 aacaaattttatttaacaaccagatccctgctcaagacgaacagagacc 480  Q
    |||||| ||||||||| |  |||||||||||||||||||||||||||||    
T  26385790 aacaaaatttatttaatagtcagatccctgctcaagacgaacagagacc 26385838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 510 - 553
Target Start/End: Complemental strand, 23983617 - 23983574
Alignment:
Q  510 tcgtatataggcggagcatccgaaaataaacaccttaaaagaca 553  Q
    ||||||||||||||||||||| |||||||||| | |||||||||    
T  23983617 tcgtatataggcggagcatccaaaaataaacatcataaaagaca 23983574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 429 - 480
Target Start/End: Original strand, 40292637 - 40292687
Alignment:
Q  429 aacaacaaattttatttaacaaccagatccctgctcaagacgaacagagacc 480  Q
    |||||||||||||||| || || ||||||||| |||||||||||||||||||    
T  40292637 aacaacaaattttattaaa-aatcagatccctcctcaagacgaacagagacc 40292687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 428 - 478
Target Start/End: Complemental strand, 1321247 - 1321197
Alignment:
Q  428 aaacaacaaattttatttaacaaccagatccctgctcaagacgaacagaga 478  Q
    ||||||||||||||||| |||||||| ||| || |||||||||||| ||||    
T  1321247 aaacaacaaattttattaaacaaccacatctctactcaagacgaacggaga 1321197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 529 - 634
Target Start/End: Original strand, 24324525 - 24324630
Alignment:
Q  529 ccgaaaataaacaccttaaaagacaccccctagcaccacactcatcaaaatacatgtcaccgtctaaaacagacgccttcacg-aaaacgaccactgtaa 627  Q
    ||||||||||||||  ||||| ||||||   || || ||||||| ||||||||| ||||||   |||||||||| |||||||| |||||||||| |||||    
T  24324525 ccgaaaataaacactctaaaa-acacccttgaggacaacactcaccaaaatacacgtcaccacttaaaacagactccttcacgaaaaacgaccattgtaa 24324623  T
Q  628 aaacgat 634  Q
     ||||||    
T  24324624 gaacgat 24324630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 543
Target Start/End: Complemental strand, 36674847 - 36674810
Alignment:
Q  506 ggcgtcgtatataggcggagcatccgaaaataaacacc 543  Q
    |||||||||||||||||||  |||||||||||||||||    
T  36674847 ggcgtcgtatataggcggaatatccgaaaataaacacc 36674810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 474
Target Start/End: Complemental strand, 43235764 - 43235719
Alignment:
Q  429 aacaacaaattttatttaacaaccagatccctgctcaagacgaaca 474  Q
    |||||||||||||||| || |||||||| ||| |||||||||||||    
T  43235764 aacaacaaattttattaaagaaccagattcctactcaagacgaaca 43235719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 604 - 632
Target Start/End: Original strand, 6716538 - 6716566
Alignment:
Q  604 ccttcacgaaaacgaccactgtaaaaacg 632  Q
    |||||||||||||||||||||||||||||    
T  6716538 ccttcacgaaaacgaccactgtaaaaacg 6716566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1384 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold1384
Description:

Target: scaffold1384; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 429 - 475
Target Start/End: Original strand, 1286 - 1332
Alignment:
Q  429 aacaacaaattttatttaacaaccagatccctgctcaagacgaacag 475  Q
    |||||||||||||||| | ||||||||||||||||||| ||||||||    
T  1286 aacaacaaattttattaagcaaccagatccctgctcaaaacgaacag 1332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 428 - 479
Target Start/End: Original strand, 426554 - 426605
Alignment:
Q  428 aaacaacaaattttatttaacaaccagatccctgctcaagacgaacagagac 479  Q
    ||||| |||||||||||||| || ||||||||| |||||||||| |||||||    
T  426554 aaacagcaaattttatttaaaaatcagatccctactcaagacgatcagagac 426605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 428 - 472
Target Start/End: Original strand, 41796 - 41840
Alignment:
Q  428 aaacaacaaattttatttaacaaccagatccctgctcaagacgaa 472  Q
    ||||||||||||||||||||||| || ||| ||| ||||||||||    
T  41796 aaacaacaaattttatttaacaatcaaatctctgttcaagacgaa 41840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University