View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5054_high_4 (Length: 382)
Name: NF5054_high_4
Description: NF5054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5054_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 16 - 372
Target Start/End: Complemental strand, 1807783 - 1807427
Alignment:
| Q |
16 |
caccttcatcactcctttgaatttggccatccaaattaccatcatcgggagcaccgcaacaaccgctatttttctggccagctccattcacaatcacaat |
115 |
Q |
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| T |
1807783 |
caccttcatcacttctttgaatttggccatccagattaccatcttcgggagcaccgcaacaaccgctatttttctggccagctccattcacaatcacaat |
1807684 |
T |
|
| Q |
116 |
aaaacaagcacaaataatggctagaaccaaaccatctaacccaaaccaaggtctttggcctaaagatttagactttggaagatcttgcacttttctcaca |
215 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1807683 |
aaaacaagcacaaacaatggctagaaccaaaccatctaacccaaaccaaggtctttggcctaaagatttagactttggaagatcttgcacttttctcaca |
1807584 |
T |
|
| Q |
216 |
tatttaacagctgttaaagcaaatgacaaaccttgtgctagttgaattcccctcacaacagataaaggaactaacttgtaaaccagctgcatcaatcctg |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
1807583 |
tatttaacagctgttaaagcaaatgacaaaccttgtgctagttgaattcccctcacaacagataaaggaactaacttgtacaccagctgcatcaatcctg |
1807484 |
T |
|
| Q |
316 |
tgataccaagaacgaagagcacgccaccggtcaagattccggctgtcattatctctg |
372 |
Q |
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| T |
1807483 |
tgataccaagaacgaagagcacgccaccggtcaagattccggctgtcattatctctg |
1807427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 93 - 310
Target Start/End: Complemental strand, 1875346 - 1875129
Alignment:
| Q |
93 |
ccagctccattcacaatcacaataaaacaagcacaaataatggctagaaccaaaccatctaacccaaaccaaggtctttggcctaaagatttagactttg |
192 |
Q |
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||||| ||||||||||| ||||| |||||| |||||| |||||||| |||||| |||||||| ||||||||||||||||| ||||||| ||||||||||| |
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| T |
1875346 |
ccagcaccattcacaattacaatgaaacaaacacaaacaatggctaaaaccaatccatctaatccaaaccaaggtctttgacctaaagctttagactttg |
1875247 |
T |
|
| Q |
193 |
gaagatcttgcacttttctcacatatttaacagctgttaaagcaaatgacaaaccttgtgctagttgaattcccctcacaacagataaaggaactaactt |
292 |
Q |
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|||||||||||| ||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
1875246 |
gaagatcttgcattttcctcacatatttaacagcagttaaagcaaatgataaaccttgtgctagttgaattcccctcacaacagataaaggaataaactt |
1875147 |
T |
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| Q |
293 |
gtaaaccagctgcatcaa |
310 |
Q |
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||| |||| ||||||||| |
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| T |
1875146 |
gtacaccaactgcatcaa |
1875129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 143; Significance: 5e-75; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 93 - 355
Target Start/End: Original strand, 25798506 - 25798768
Alignment:
| Q |
93 |
ccagctccattcacaatcacaataaaacaagcacaaataatggctagaaccaaaccatctaacccaaaccaaggtctttggcctaaagatttagactttg |
192 |
Q |
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||||||||||| ||||||| |||||||||| ||||| ||| ||||||||||| ||||||||||| |||||||| |||| || |||| ||||||||| | |
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| T |
25798506 |
ccagctccattaacaatcaatataaaacaagtacaaacaatagctagaaccaacccatctaaccctaaccaaggcctttcacccaaagctttagacttgg |
25798605 |
T |
|
| Q |
193 |
gaagatcttgcacttttctcacatatttaacagctgttaaagcaaatgacaaaccttgtgctagttgaattcccctcacaacagataaaggaactaactt |
292 |
Q |
| |
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|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||| || ||||| ||||| |
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| T |
25798606 |
gaagatcttgcactttcttcacatatttaacagcagttaaagcaaatgacaaaccttgtgctagttgaatgccccttacaacaggtagaggaataaactt |
25798705 |
T |
|
| Q |
293 |
gtaaaccagctgcatcaatcctgtgataccaagaacgaagagcacgccaccggtcaagattcc |
355 |
Q |
| |
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|||| |||||| ||||||||||||||| ||||||| ||| | |||||| |||||||||||||| |
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| T |
25798706 |
gtaacccagcttcatcaatcctgtgatgccaagaatgaacaacacgccgccggtcaagattcc |
25798768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 177 - 283
Target Start/End: Original strand, 49993732 - 49993838
Alignment:
| Q |
177 |
aaagatttagactttggaagatcttgcacttttctcacatatttaacagctgttaaagcaaatgacaaaccttgtgctagttgaattcccctcacaacag |
276 |
Q |
| |
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||||||||||||||||| | |||||| |||||||| |||||||||| ||| ||||||||||| |||||||||||||| || ||||| || | |||||| |
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| T |
49993732 |
aaagatttagactttggtaaatcttgaacttttctaacatatttaatagcagttaaagcaaaagacaaaccttgtgcaagctgaatccctcgaacaacac |
49993831 |
T |
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| Q |
277 |
ataaagg |
283 |
Q |
| |
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||||||| |
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| T |
49993832 |
ataaagg |
49993838 |
T |
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