View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5054_low_1 (Length: 669)
Name: NF5054_low_1
Description: NF5054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5054_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 567; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 20 - 662
Target Start/End: Complemental strand, 20141130 - 20140494
Alignment:
| Q |
20 |
aaactacccttctgttgtcctggtcctcttcatgctggtattctcttcaacaccgctgatttcccagatgaacaacaccaccaacaacctattannnnnn |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20141130 |
aaactacccttctgttgtcctggtcctcttcatgctggtattctcttcaacaccgctgatttcccagatgaacaacaccaccaacaacctattacatcat |
20141031 |
T |
|
| Q |
120 |
nnnnnnnnnnnnnngcaacaacaccttcatcatctcttcctcctcaaacaaatgaatgttcttcttattggtcactctatgatgatctttatcatgatac |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20141030 |
catcatcat------caacaacaccttcatcatctcttcctcctcaaacaaatgaatgttcttcttattggtcactctatgatgatctttatcatgatac |
20140937 |
T |
|
| Q |
220 |
actctacgcagattctgaagctcatcatcatcttcaacagggacaagaacagaccaacgaggaagagattagaactggggttgttgatgttccaccagaa |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20140936 |
actctacgcagattctgaagctcatcatcatcttcaacagggacaagaacagaccaacgaggaagagattagaactggggttgttgatgttccaccagaa |
20140837 |
T |
|
| Q |
320 |
gccaagaagagaaaggttaatgggtcattgagttcacatttagccacaggaaaatggactcttagtagagaacaaggaagtaagttactagcaagacaat |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20140836 |
gccaagaagagaaaggttaatgggtcattgagttcacatttagctacaggaaaatggactcttagtagagaacaaggaagtaagttactagcaagacaat |
20140737 |
T |
|
| Q |
420 |
ttcgtgatgattgtttatacgtttgtgattggcctggttgtgttcatttggaagagaagagaaagtatagactttttcgaggtgtttttatgaatttcaa |
519 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
20140736 |
ttcgtgatgattgtttatacgtttgtgattggcctggttgtgttcatttggaagagaagagaaagtatagactttttcgaggtatttttatgaatttcaa |
20140637 |
T |
|
| Q |
520 |
gaaaacacgtgtttggaagactgtgaatgatattagtaatcggaagaagattgatttggcttgtgctttttgttcttgtaatcatacttgggatcttcac |
619 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20140636 |
gaaaacacgtgtttggaagactgtgaatgatattagtaatcggaagaagattgatttggcttgtgctttttgttcttgtaatcatacttgggatcttcac |
20140537 |
T |
|
| Q |
620 |
tctgctttttgtttgaggagaggatttggttatcatgatgatg |
662 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20140536 |
tctgctttttgtttgaggagaggatttggttatcatgatgatg |
20140494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 567; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 20 - 662
Target Start/End: Complemental strand, 44318545 - 44317909
Alignment:
| Q |
20 |
aaactacccttctgttgtcctggtcctcttcatgctggtattctcttcaacaccgctgatttcccagatgaacaacaccaccaacaacctattannnnnn |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44318545 |
aaactacccttctgttgtcctggtcctcttcatgctggtattctcttcaacaccgctgatttcccagatgaacaacaccaccaacaacctattacatcat |
44318446 |
T |
|
| Q |
120 |
nnnnnnnnnnnnnngcaacaacaccttcatcatctcttcctcctcaaacaaatgaatgttcttcttattggtcactctatgatgatctttatcatgatac |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44318445 |
catcatcat------caacaacaccttcatcatctcttcctcctcaaacaaatgaatgttcttcttattggtcactctatgatgatctttatcatgatac |
44318352 |
T |
|
| Q |
220 |
actctacgcagattctgaagctcatcatcatcttcaacagggacaagaacagaccaacgaggaagagattagaactggggttgttgatgttccaccagaa |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44318351 |
actctacgcagattctgaagctcatcatcatcttcaacagggacaagaacagaccaacgaggaagagattagaactggggttgttgatgttccaccagaa |
44318252 |
T |
|
| Q |
320 |
gccaagaagagaaaggttaatgggtcattgagttcacatttagccacaggaaaatggactcttagtagagaacaaggaagtaagttactagcaagacaat |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44318251 |
gccaagaagagaaaggttaatgggtcattgagttcacatttagctacaggaaaatggactcttagtagagaacaaggaagtaagttactagcaagacaat |
44318152 |
T |
|
| Q |
420 |
ttcgtgatgattgtttatacgtttgtgattggcctggttgtgttcatttggaagagaagagaaagtatagactttttcgaggtgtttttatgaatttcaa |
519 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
44318151 |
ttcgtgatgattgtttatacgtttgtgattggcctggttgtgttcatttggaagagaagagaaagtatagactttttcgaggtatttttatgaatttcaa |
44318052 |
T |
|
| Q |
520 |
gaaaacacgtgtttggaagactgtgaatgatattagtaatcggaagaagattgatttggcttgtgctttttgttcttgtaatcatacttgggatcttcac |
619 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44318051 |
gaaaacacgtgtttggaagactgtgaatgatattagtaatcggaagaagattgatttggcttgtgctttttgttcttgtaatcatacttgggatcttcac |
44317952 |
T |
|
| Q |
620 |
tctgctttttgtttgaggagaggatttggttatcatgatgatg |
662 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44317951 |
tctgctttttgtttgaggagaggatttggttatcatgatgatg |
44317909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University