View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5054_low_13 (Length: 238)
Name: NF5054_low_13
Description: NF5054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5054_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 20 - 204
Target Start/End: Complemental strand, 28922553 - 28922370
Alignment:
| Q |
20 |
actggctggtgttaataatggcattcatgtgctgcttcttgcattcttccttttaatgttgtttgttttccatttctcaacgatgcactccgatatcaca |
119 |
Q |
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| T |
28922553 |
actggctggtgttaataatggcattcatgtgctgcttcttgcattcttccttttaatgttgtttgttttccatttctcagtgatgcactccgatatcaca |
28922454 |
T |
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| Q |
120 |
gtccaagttcaatataatatatccttttaatattttattatgttcaagaggatcactttcacttatttataatctaattgtgata |
204 |
Q |
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| T |
28922453 |
gtctgatttcaatataatatatcc-tttaatattttattatgctcaagaggatcactttcacttatttataatctaattgtgata |
28922370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 22 - 189
Target Start/End: Complemental strand, 28913090 - 28912924
Alignment:
| Q |
22 |
tggctggtgttaataatggcattcatgtgctgcttcttgcattcttccttttaatgttgtttgttttccatttctcaacgatgcactccgatatcacagt |
121 |
Q |
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|||||||||||||||| |||| ||||| |||||||||| ||||||||||||||||||||| ||| ||||||| | ||||| |||||||||||||||| |
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| T |
28913090 |
tggctggtgttaataaccccattgatgtgttgcttcttgctttcttccttttaatgttgtttattt-ccatttcctaccgatgtactccgatatcacagt |
28912992 |
T |
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| Q |
122 |
ccaagttcaatataatatatccttttaatattttattatgttcaagaggatcactttcacttatttat |
189 |
Q |
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| T |
28912991 |
ccgagttcaatataatatatcctttaatgtttttattattttcaagaggatcactttcacttatttat |
28912924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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