View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5055-Insertion-1 (Length: 565)
Name: NF5055-Insertion-1
Description: NF5055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5055-Insertion-1 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 529; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 7 - 565
Target Start/End: Complemental strand, 27633090 - 27632533
Alignment:
| Q |
7 |
acgatagtaggaatgacatcgctgacaagatcacttcctgacacatatgaggacatgtgttgttggtcctttcttgtcgtaataaatcctgatgtttgtg |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
27633090 |
acgatagtaggaatgacatcgctgacaagatcacttcctgacacatatgaggacatgtgttgttggtcctttcttgtcgtaatgaatcctgatgtttgtg |
27632991 |
T |
|
| Q |
107 |
ttgatgatgaagatgagggtgccattttaccagaattatctaaagaaatgtctgatgataaactaatttcagtttcaggtaacaaggcaataatgtcttc |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27632990 |
ttgatgatgaagatgagggtgccattttaccagaattatctaaagaaatgtctgatgataaactaatttcagtttcaggtaacaaggcaataatgtcttc |
27632891 |
T |
|
| Q |
207 |
caattccctcaccacatctaacattgatggtctctcctctggatggtcatgacagcaactgagggctagagctaagaacttgtctaagcattcggatgga |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27632890 |
caattccctcaccacatctaacattgatggtctctcctctggatggtcatgacagcaactgagggctagagctaagaacttgtctaagcattcggatgga |
27632791 |
T |
|
| Q |
307 |
tattcgcccattctatcgtctataatggaatctatcaagccagcttgacaagccagattaacctgccacaaaattatgtagcataatttatataagagta |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27632790 |
tattcgcccattctatcgtctataatggaatctatcaagccagcttgacaagccagattaacctgccacaaaattatgtagcataatttatataagagta |
27632691 |
T |
|
| Q |
407 |
tgtttaaacagtagtatttctttcaacatggtaggaaaataaagagtattgttgcatgatgtcaacttagtccctgcgagacaa-tttcaaggactaaat |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||||||||| ||||||||||||||| |
|
|
| T |
27632690 |
tgtttaaacagtagtatttctttcaacatggtaggaaaataaagagtattgttgcacgatgtcaactta--ccttgcgagacaattttcaaggactaaat |
27632593 |
T |
|
| Q |
506 |
tgaccgatctaaaagaactaatataatcaaaggttttcaatttcgaggactattttcgta |
565 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27632592 |
tgaccgatctaaaagaactaatataatcaaaggttttcaatttcgaggactattttcgta |
27632533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 10 - 478
Target Start/End: Complemental strand, 6862632 - 6862164
Alignment:
| Q |
10 |
atagtaggaatgacatcgctgacaagatcacttcctgacacatatgaggacatgtgttgttggtcctttcttgtcgtaataaatcctgatgtttgtgttg |
109 |
Q |
| |
|
||||||||| ||| ||| |||||||||||||||||||||||||||||| |||||| ||||| ||| |||||||| || | ||||| |||||| ||||| |
|
|
| T |
6862632 |
atagtaggattgatatcactgacaagatcacttcctgacacatatgagaacatgttctgttgatccattcttgtcatagtgaatccagatgttattgttg |
6862533 |
T |
|
| Q |
110 |
atg---atgaagatgagggtgccattttaccagaattatctaaagaaatgtctgatgataaactaatttcagtttcaggtaacaaggcaataatgtcttc |
206 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
6862532 |
atgatgatgaagatgagggtgccattttaccagaattatcgaaagaaacatc---cgataaactaatttcagtttcaggtaccaaggcaataatgtcttc |
6862436 |
T |
|
| Q |
207 |
caattccctcaccacatctaacattgatggtctctcctctggatggtcatgacagcaactgagggctagagctaagaacttgtctaagcattcggatgga |
306 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||| |
|
|
| T |
6862435 |
caactccctcaccacatctaacattgatggtctctcctctggatggtcatgacagcaactgagggccagagctaagaacttgtctgtgcattcagatgga |
6862336 |
T |
|
| Q |
307 |
tattcgcccattctatcgtctataatggaatctatcaagccagcttgacaagccagattaacctgccacaaaattatgtagcataatttatataagagta |
406 |
Q |
| |
|
|| || |||||||| | |||||||||||||| || | ||||| | ||||||||| ||||||||| | |||||| | || |||||| ||||||||| |
|
|
| T |
6862335 |
tactcacccattctgttatctataatggaatccattatgccagatcgacaagccaaattaacctgatataaaattgtataccataatagcaataagagta |
6862236 |
T |
|
| Q |
407 |
tgtttaaacagtagtatttctttcaacatggtaggaaaataaagagtattgttgcatgatgtcaacttagtc |
478 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||||| |||||| ||||||||||||| | |||||||| |
|
|
| T |
6862235 |
tgtttaatcagtagtatttctttcaacttggtaggaaaatgaagagtgttgttgcatgatgccgacttagtc |
6862164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 491 - 535
Target Start/End: Complemental strand, 26412088 - 26412044
Alignment:
| Q |
491 |
tttcaaggactaaattgaccgatctaaaagaactaatataatcaa |
535 |
Q |
| |
|
||||| ||||||||||||| || |||||||||||||| ||||||| |
|
|
| T |
26412088 |
tttcatggactaaattgactgacctaaaagaactaatgtaatcaa |
26412044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University