View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5055-Insertion-2 (Length: 471)
Name: NF5055-Insertion-2
Description: NF5055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5055-Insertion-2 |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 11 - 465
Target Start/End: Original strand, 10075490 - 10075950
Alignment:
| Q |
11 |
accccttcaaaaaccaagcaattagaattagaacagttttgataaaaataggttcaatatattttttgttttgtgcgtagggttagagtatattgttatt |
110 |
Q |
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| T |
10075490 |
accccttcaaaaatcaagcaattagaattagaacagttttgataaaaatagtttcaatatattttttgttttgtgcgtagggttagagtatattgttatt |
10075589 |
T |
|
| Q |
111 |
aagtacttactagtaaccgatgaattatttgattgagctatgtttttgaatggacaatgatgagttgaattattttgtcaattatcataatgaagggtct |
210 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | | |||||| ||| |
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| T |
10075590 |
aagtacgtactagtaaccgatgaattatttgattgagctatgtttttgaatggaccatgatgagttgaattattttgtcaattagccaattgaaggatct |
10075689 |
T |
|
| Q |
211 |
ctgtccacaaccgtttaattatttaattgttgtctcattagacaattagagtatggatacactaaataacgatgaggatagtcaatcctctaatacttgc |
310 |
Q |
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||| | |||||||||||| ||||||| |||||| |||||||| |||||||||||||||||||||| ||||||| ||||||||||||||| | |||||| |
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| T |
10075690 |
ctgcctacaaccgtttaactatttaaccgttgtcacattagacggttagagtatggatacactaaatgacgatgacgatagtcaatcctctcacacttgc |
10075789 |
T |
|
| Q |
311 |
tctccgatcgcatgtttctcaaaccctaaatgatatgtta-tcataatcgtctcaaaata-----tgagacgatcatcgtgtgtctcttaaaccttaatt |
404 |
Q |
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|||| |||| ||||| |||||||| |||||||||| |||| ||||||||||||||||||| |||||||||||| | ||||||||||||| || || |
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| T |
10075790 |
tctctgatcacatgtctctcaaactctaaatgatacgttattcataatcgtctcaaaatatgagttgagacgatcattgcatgtctcttaaaccctactt |
10075889 |
T |
|
| Q |
405 |
ttgtatatgtgatcattaaaatcacaacatatatatcaaggttagattacctcagtctctt |
465 |
Q |
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|||||| |||||||||||| || |||| ||||||| ||||| ||||||||| ||||||||| |
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| T |
10075890 |
ttgtatctgtgatcattaacattacaatatatataccaaggctagattaccccagtctctt |
10075950 |
T |
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