View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5055-Insertion-3 (Length: 82)

Name: NF5055-Insertion-3
Description: NF5055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5055-Insertion-3
NF5055-Insertion-3
[»] chr5 (3 HSPs)
chr5 (8-82)||(26380060-26380134)
chr5 (8-69)||(5348084-5348145)
chr5 (8-69)||(36429650-36429711)
[»] chr4 (2 HSPs)
chr4 (8-79)||(27455288-27455359)
chr4 (8-79)||(49681750-49681821)
[»] chr7 (1 HSPs)
chr7 (8-69)||(36067683-36067744)
[»] chr2 (2 HSPs)
chr2 (8-69)||(10256065-10256126)
chr2 (8-69)||(4592986-4593047)
[»] scaffold0102 (1 HSPs)
scaffold0102 (8-69)||(32720-32781)
[»] chr6 (4 HSPs)
chr6 (8-69)||(30709861-30709922)
chr6 (8-69)||(15347793-15347854)
chr6 (8-69)||(17732512-17732573)
chr6 (8-69)||(6009125-6009186)
[»] chr3 (3 HSPs)
chr3 (8-69)||(47471061-47471122)
chr3 (8-69)||(50837955-50838016)
chr3 (8-69)||(54560394-54560455)
[»] chr8 (2 HSPs)
chr8 (8-79)||(20111972-20112044)
chr8 (8-69)||(14791038-14791099)
[»] chr1 (1 HSPs)
chr1 (8-69)||(47445478-47445539)


Alignment Details
Target: chr5 (Bit Score: 71; Significance: 8e-33; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 8e-33
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 26380060 - 26380134
Alignment:
Q  8 aaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaataacattaacaacaacaacagcaacaatgg 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  26380060 aaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaataacattaacaacagcaacagcaacaatgg 26380134  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 7e-18
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 5348084 - 5348145
Alignment:
Q  8 aaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaataacattaacaacaaca 69  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| ||| |||| |||||    
T  5348084 aaaagatcatgaacttgttggaaaaagaacaagggttatgatgaatagcatgaacaccaaca 5348145  T

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Target: chr5; HSP #3
Raw Score: 46; E-Value: 7e-18
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 36429650 - 36429711
Alignment:
Q  8 aaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaataacattaacaacaaca 69  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| |||  |||||||||    
T  36429650 aaaagatcatgaacttgtttgaaaaagaacaaggtttatgatgaatagcatggacaacaaca 36429711  T

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Target: chr4 (Bit Score: 56; Significance: 7e-24; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 7e-24
Query Start/End: Original strand, 8 - 79
Target Start/End: Original strand, 27455288 - 27455359
Alignment:
Q  8 aaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaataacattaacaacaacaacagcaacaa 79  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| || ||||||    
T  27455288 aaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaatagcatgaacaacaacatcaacaacaa 27455359  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-19
Query Start/End: Original strand, 8 - 79
Target Start/End: Complemental strand, 49681821 - 49681750
Alignment:
Q  8 aaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaataacattaacaacaacaacagcaacaa 79  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||| ||| |||||||||| || ||||||    
T  49681821 aaaagatcatgaaattgttggaaaaagaacaacgtttatgatgaatagcatgaacaacaacatcaacaacaa 49681750  T

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Target: chr7 (Bit Score: 54; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 1e-22
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 36067683 - 36067744
Alignment:
Q  8 aaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaataacattaacaacaaca 69  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  36067683 aaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaatagcatgaacaacaaca 36067744  T

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Target: chr2 (Bit Score: 54; Significance: 1e-22; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 1e-22
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 10256065 - 10256126
Alignment:
Q  8 aaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaataacattaacaacaaca 69  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  10256065 aaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaatagcatgaacaacaaca 10256126  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 7e-18
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 4592986 - 4593047
Alignment:
Q  8 aaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaataacattaacaacaaca 69  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| ||| |||| |||||    
T  4592986 aaaagatcatgaacttgttggaaaaagaacaagggttatgatgaatagcatgaacaccaaca 4593047  T

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Target: scaffold0102 (Bit Score: 50; Significance: 3e-20; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 50; E-Value: 3e-20
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 32720 - 32781
Alignment:
Q  8 aaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaataacattaacaacaaca 69  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  32720 aaaatatcatgaacttgttggaaaaagaacaaggtttatgatgaatagcatgaacaacaaca 32781  T

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Target: chr6 (Bit Score: 50; Significance: 3e-20; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 3e-20
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 30709861 - 30709922
Alignment:
Q  8 aaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaataacattaacaacaaca 69  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||    
T  30709861 aaaagatcatgaacttgtttgaaaaagaacaaggtttatgatgaatagcatgaacaacaaca 30709922  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 7e-18
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 15347793 - 15347854
Alignment:
Q  8 aaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaataacattaacaacaaca 69  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| ||| |||| |||||    
T  15347793 aaaagatcatgaacttgttggaaaaagaacaagggttatgatgaatagcatgaacaccaaca 15347854  T

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Target: chr6; HSP #3
Raw Score: 46; E-Value: 7e-18
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 17732573 - 17732512
Alignment:
Q  8 aaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaataacattaacaacaaca 69  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| ||| |||| |||||    
T  17732573 aaaagatcatgaacttgttggaaaaagaacaagggttatgatgaatagcatgaacaccaaca 17732512  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 6009186 - 6009125
Alignment:
Q  8 aaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaataacattaacaacaaca 69  Q
    |||||||| || |||||||||||||||||||||| |||||||||||| ||| |||| |||||    
T  6009186 aaaagatcgtggacttgttggaaaaagaacaagggttatgatgaatagcatgaacaccaaca 6009125  T

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Target: chr3 (Bit Score: 50; Significance: 3e-20; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 3e-20
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 47471061 - 47471122
Alignment:
Q  8 aaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaataacattaacaacaaca 69  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||    
T  47471061 aaaagatcatgaacttgttggaaaaagaacaaggtttataatgaatagcatgaacaacaaca 47471122  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 7e-18
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 50838016 - 50837955
Alignment:
Q  8 aaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaataacattaacaacaaca 69  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| ||| |||| |||||    
T  50838016 aaaagatcatgaacttgttggaaaaagaacaagggttatgatgaatagcatgaacaccaaca 50837955  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 7e-18
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 54560394 - 54560455
Alignment:
Q  8 aaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaataacattaacaacaaca 69  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| ||| |||| |||||    
T  54560394 aaaagatcatgaacttgttggaaaaagaacaagggttatgatgaatagcatgaacaccaaca 54560455  T

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Target: chr8 (Bit Score: 49; Significance: 1e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-19
Query Start/End: Original strand, 8 - 79
Target Start/End: Complemental strand, 20112044 - 20111972
Alignment:
Q  8 aaaagatcatgaacttgttggaaaaagaacaagg-tttatgatgaataacattaacaacaacaacagcaacaa 79  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||| || ||||||    
T  20112044 aaaagatcatgaacttgttggaaaaagaacaaggttttatgatgaatagcatgaacaacaacatcaacaacaa 20111972  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 14791038 - 14791099
Alignment:
Q  8 aaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaataacattaacaacaaca 69  Q
    |||| ||||||||||||||||||||||||||||| |||||||||||| ||| |||| |||||    
T  14791038 aaaatatcatgaacttgttggaaaaagaacaagggttatgatgaatagcatgaacaccaaca 14791099  T

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Target: chr1 (Bit Score: 46; Significance: 7e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 7e-18
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 47445539 - 47445478
Alignment:
Q  8 aaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaataacattaacaacaaca 69  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||    
T  47445539 aaaaaatcatgaacttgttggaaaaagaacaaggtttataatgaatagcatgaacaacaaca 47445478  T

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