View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5055-Insertion-4 (Length: 451)
Name: NF5055-Insertion-4
Description: NF5055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5055-Insertion-4 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 7 - 451
Target Start/End: Complemental strand, 5461761 - 5461317
Alignment:
| Q |
7 |
agaaatcacatgagtaccttgtgacatcatatggtgccgatccaacaggaaattcagatagcactgatgcacttcttgctgccatagctgatgctgcaaa |
106 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5461761 |
agaaatcacatgagtaccttgtgacattatatggtgccgatccaacaggaaattcagatagcactgatgcacttcttgctgccatagctgatgctgcaaa |
5461662 |
T |
|
| Q |
107 |
aggtccaagtaaagggtttttgatgaatggcataattgaccttggaggtgctcaaattaatcttcaaggtggaaattacttgatcagcaaacctttgcat |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5461661 |
aggtccaagtaaagggtttttgatgaatggcataattgaccttggaggtgctcaaattaatcttcaaggtggaaattacttgatcagcaaacctttgcat |
5461562 |
T |
|
| Q |
207 |
tttccaatggctggtgttggaaatctcatggtatgtttgcagacaccattcttagtaaattattaggtcaatgatctcgaatatgaaaaaacaagtcgac |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
5461561 |
tttccaatggctggtgttggaaatctcatggtatatttgcagacaccattcttagtaaattattaggtcaatgatctcgaatatgaaaaaacaagtctac |
5461462 |
T |
|
| Q |
307 |
cttcataacttttttacggtaacgctgtaattttgttaaaattttaaagtgtagtttttataatcgtgattttgtcaaacttactttcgatccaaaatat |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5461461 |
cttcataacttttttacggtaacgctgtaattttgttaaaattttaaagtgtagtttttatcatcgtgattttgtcaaacttactttcaatccaaaatat |
5461362 |
T |
|
| Q |
407 |
atgtttgaaatcgcagtaagtttgacaaaattatcgacactataa |
451 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5461361 |
atgtttgaaatcgcagtaagtttgacaaaattatcgacactataa |
5461317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 21 - 193
Target Start/End: Original strand, 15159399 - 15159571
Alignment:
| Q |
21 |
taccttgtgacatcatatggtgccgatccaacaggaaattcagatagcactgatgcacttcttgctgccatagctgatgctgcaaaaggtccaagtaaag |
120 |
Q |
| |
|
|||| ||||||||| |||||||| || |||||||| ||||||||||||||||| ||| | ||||| |||||||| ||||| | || ||||||||| ||| |
|
|
| T |
15159399 |
taccatgtgacatcctatggtgcagacccaacaggcaattcagatagcactgaagcattacttgcagccatagcagatgcaaccaatggtccaagtgaag |
15159498 |
T |
|
| Q |
121 |
ggtttttgatgaatggcataattgaccttggaggtgctcaaattaatcttcaaggtggaaattacttgatcag |
193 |
Q |
| |
|
| | ||||||| | ||||| | | ||||||||||||| || ||||||||| ||||||||||||| ||||||| |
|
|
| T |
15159499 |
gatatttgatggaaggcatcagtaaccttggaggtgcacagattaatcttgaaggtggaaattatatgatcag |
15159571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University