View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5055_high_14 (Length: 264)

Name: NF5055_high_14
Description: NF5055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5055_high_14
NF5055_high_14
[»] chr4 (25 HSPs)
chr4 (1-247)||(48898875-48899121)
chr4 (1-94)||(45365900-45365993)
chr4 (1-224)||(7773505-7773722)
chr4 (119-224)||(48852851-48852950)
chr4 (126-236)||(49043994-49044095)
chr4 (1-81)||(7790381-7790461)
chr4 (1-78)||(7237423-7237500)
chr4 (107-168)||(7765853-7765914)
chr4 (107-168)||(7786675-7786736)
chr4 (3-80)||(48156111-48156188)
chr4 (126-167)||(50669297-50669338)
chr4 (1-81)||(7771696-7771776)
chr4 (1-37)||(7878728-7878764)
chr4 (123-163)||(37826798-37826838)
chr4 (186-234)||(48903115-48903163)
chr4 (186-229)||(48705238-48705281)
chr4 (107-219)||(49048361-49048464)
chr4 (1-87)||(7765937-7766023)
chr4 (199-229)||(48870713-48870743)
chr4 (199-229)||(48886399-48886429)
chr4 (195-236)||(48147578-48147619)
chr4 (196-229)||(50250637-50250670)
chr4 (1-33)||(7786813-7786845)
chr4 (135-167)||(7908549-7908581)
chr4 (119-159)||(45371866-45371906)
[»] chr8 (5 HSPs)
chr8 (1-238)||(15349030-15349264)
chr8 (1-163)||(12195543-12195705)
chr8 (1-163)||(12439971-12440133)
chr8 (105-163)||(12200561-12200619)
chr8 (105-163)||(12444989-12445047)
[»] chr5 (3 HSPs)
chr5 (1-87)||(9120058-9120144)
chr5 (1-76)||(179364-179439)
chr5 (123-168)||(42562129-42562174)
[»] chr6 (1 HSPs)
chr6 (186-224)||(21015994-21016032)
[»] chr7 (1 HSPs)
chr7 (123-163)||(48884049-48884089)
[»] chr3 (1 HSPs)
chr3 (44-168)||(11024220-11024344)


Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 48899121 - 48898875
Alignment:
Q  1 ctttcatcacccatatttcaactgtatcattagcataatttgcagcccatatactgaaaaaatctccaaagacccacaaaccacaatcctgaggaatatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48899121 ctttcatcacccatatttcaactgtatcattagcataatttgcagcccatatactgaaaaaatctccaaagacccacaaaccacaatcctgaggaatatg 48899022  T
Q  101 ttccaaatcatctggaggagacatctctaacagtttcctttccgttaaatcaaaggcaacaatgacattatcataccatggatggaaatcacgatgaaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48899021 ttccaaatcatctggaggagacatctctaacagtttcctttccgttaaatcaaaggcaacaatgacattatcataccatggatggaaatcacgatgaaaa 48898922  T
Q  201 gccaaccaatgaatagccccattatagagtgaccctgcatggggatt 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  48898921 gccaaccaatgaatagccccattatagagtgaccctgcatggggatt 48898875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 45365900 - 45365993
Alignment:
Q  1 ctttcatcacccatatttcaactgtatcattagcataatttgcagcccatatactgaaaaaatctccaaagacccacaaaccacaatcctgagg 94  Q
    |||||||||||||||||||||||||||||||| ||||||    |||||| | ||||||||| |||||||| ||||||||||||||||| |||||    
T  45365900 ctttcatcacccatatttcaactgtatcattatcataatccatagcccaaaaactgaaaaattctccaaatacccacaaaccacaatcgtgagg 45365993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 7773505 - 7773722
Alignment:
Q  1 ctttcatcacccatatttcaactgtatcattagcataatttgcagcccatatactgaaaaaatctccaaagacccacaaaccacaat---cctgaggaat 97  Q
    |||||||||||||||||||||||||||||||||||| ||    |||||||| ||| | | | |||||||| |||||||||||| |||   ||   | | |    
T  7773505 ctttcatcacccatatttcaactgtatcattagcattatccttagcccatacactaagatattctccaaatacccacaaaccagaatgtaccaatgcact 7773604  T
Q  98 atgttccaaatcatctggaggagacatctctaacagtttcctttccgttaaatcaaaggcaacaatgacattatcataccatggatggaaatcacgatga 197  Q
    ||| |  | || || |||| ||| |||||| |||| |||||||||| |||||||||||| |||||| |||||      |||   | | ||||||||| |     
T  7773605 atggtgaacattatttggaagaggcatctcaaacaatttcctttccattaaatcaaaggaaacaattacatt------cca---acgtaaatcacgacgc 7773695  T
Q  198 aaagccaaccaatgaatagccccatta 224  Q
    |||||||||||||||||||||||||||    
T  7773696 aaagccaaccaatgaatagccccatta 7773722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 119 - 224
Target Start/End: Complemental strand, 48852950 - 48852851
Alignment:
Q  119 agacatctctaacagtttcctttccgttaaatcaaaggcaacaatgacattatcataccatggatggaaatcacgatgaaaagccaaccaatgaatagcc 218  Q
    ||||| |||||| |||||||||||| ||||||||||||| ||||| |||||||     ||| |  | |||||| || |||||||||||||||||||||||    
T  48852950 agacaactctaaaagtttcctttccattaaatcaaaggccacaataacattat----tcattg--gtaaatcatgacgaaaagccaaccaatgaatagcc 48852857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 126 - 236
Target Start/End: Original strand, 49043994 - 49044095
Alignment:
Q  126 tctaacagtttcctttccgttaaatcaaaggcaacaatgacattatcataccatggatggaaatcacgatgaaaagccaaccaatgaatagccccattat 225  Q
    ||||| |||||||||||  ||||||||||||||||||| |||||       ||| |||  |||||| |||||||||||||||| |||||||||||||||     
T  49043994 tctaaaagtttcctttcaattaaatcaaaggcaacaataacatt-------cattgat--aaatcaagatgaaaagccaaccagtgaatagccccattaa 49044084  T
Q  226 agagtgaccct 236  Q
    |||| ||||||    
T  49044085 agagcgaccct 49044095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 7790461 - 7790381
Alignment:
Q  1 ctttcatcacccatatttcaactgtatcattagcataatttgcagcccatatactgaaaaaatctccaaagacccacaaac 81  Q
    ||||||||||||||||||||| |||||||||| ||||||    ||| |||| ||||| ||| |||||||| ||||||||||    
T  7790461 ctttcatcacccatatttcaattgtatcattatcataatccttagcgcataaactgagaaattctccaaatacccacaaac 7790381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 7237423 - 7237500
Alignment:
Q  1 ctttcatcacccatatttcaactgtatcattagcataatttgcagcccatatactgaaaaaatctccaaagacccaca 78  Q
    ||||||||||||||||| ||| |||||||||| ||||||    |||||||| ||||| ||| |||||||| |||||||    
T  7237423 ctttcatcacccatattacaattgtatcattatcataatcctgagcccatagactgagaaattctccaaatacccaca 7237500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 168
Target Start/End: Complemental strand, 7765914 - 7765853
Alignment:
Q  107 atcatctggaggagacatctctaacagtttcctttccgttaaatcaaaggcaacaatgacat 168  Q
    ||||| |||| ||| |||||| |||| | |||||||||||||||||||| ||||||||||||    
T  7765914 atcatttggaagaggcatctcaaacaatatcctttccgttaaatcaaagccaacaatgacat 7765853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 168
Target Start/End: Complemental strand, 7786736 - 7786675
Alignment:
Q  107 atcatctggaggagacatctctaacagtttcctttccgttaaatcaaaggcaacaatgacat 168  Q
    ||||| |||| ||| |||||| |||| | |||||||||||||||||||| ||||||||||||    
T  7786736 atcatttggaagaggcatctcaaacaatatcctttccgttaaatcaaagccaacaatgacat 7786675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 80
Target Start/End: Original strand, 48156111 - 48156188
Alignment:
Q  3 ttcatcacccatatttcaactgtatcattagcataatttgcagcccatatactgaaaaaatctccaaagacccacaaa 80  Q
    ||||||||||||||||||||| | ||||||||  |||   ||||||||| ||||| ||| |||||||| |||||||||    
T  48156111 ttcatcacccatatttcaactctttcattagcccaatcaacagcccataaactgagaaattctccaaatacccacaaa 48156188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 126 - 167
Target Start/End: Complemental strand, 50669338 - 50669297
Alignment:
Q  126 tctaacagtttcctttccgttaaatcaaaggcaacaatgaca 167  Q
    |||||||||||||||||| | |||||||||||||||||||||    
T  50669338 tctaacagtttcctttccatcaaatcaaaggcaacaatgaca 50669297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 7771776 - 7771696
Alignment:
Q  1 ctttcatcacccatatttcaactgtatcattagcataatttgcagcccatatactgaaaaaatctccaaagacccacaaac 81  Q
    ||||||||||||||||| ||| |||||||||| ||||||    ||| |||| ||||| ||| |||||||| ||||||||||    
T  7771776 ctttcatcacccatattacaattgtatcattatcataatccttagcgcataaactgagaaattctccaaatacccacaaac 7771696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 7878764 - 7878728
Alignment:
Q  1 ctttcatcacccatatttcaactgtatcattagcata 37  Q
    |||||||||||||||||||||||||||||||| ||||    
T  7878764 ctttcatcacccatatttcaactgtatcattatcata 7878728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 163
Target Start/End: Original strand, 37826798 - 37826838
Alignment:
Q  123 atctctaacagtttcctttccgttaaatcaaaggcaacaat 163  Q
    ||||||||||||||||||||| |||||| ||||||||||||    
T  37826798 atctctaacagtttcctttccattaaattaaaggcaacaat 37826838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 234
Target Start/End: Complemental strand, 48903163 - 48903115
Alignment:
Q  186 aaatcacgatgaaaagccaaccaatgaatagccccattatagagtgacc 234  Q
    |||||| |||||||||||||| ||||||||||||||||| |||| ||||    
T  48903163 aaatcatgatgaaaagccaactaatgaatagccccattaaagagcgacc 48903115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 229
Target Start/End: Original strand, 48705238 - 48705281
Alignment:
Q  186 aaatcacgatgaaaagccaaccaatgaatagccccattatagag 229  Q
    |||||| || || |||||||||||||||||||||||||||||||    
T  48705238 aaatcatgacgataagccaaccaatgaatagccccattatagag 48705281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 219
Target Start/End: Original strand, 49048361 - 49048464
Alignment:
Q  107 atcatctggaggagacatctctaacagtttcctttccgttaaatcaaaggcaacaatgacattatcataccatggatggaaatcacgatgaaaagccaac 206  Q
    |||||||||  ||||||| ||||  || || |||||||||||||||||||||||||| |||||       ||| |||  |||||| ||||||||||||||    
T  49048361 atcatctggcagagacatatctacaaggtttctttccgttaaatcaaaggcaacaataacatt-------catcgat--aaatcaagatgaaaagccaac 49048451  T
Q  207 caatgaatagccc 219  Q
    || ||||||||||    
T  49048452 cagtgaatagccc 49048464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 7766023 - 7765937
Alignment:
Q  1 ctttcatcacccatatttcaactgtatcattagcataatttgcagcccatatactgaaaaaatctccaaagacccacaaaccacaat 87  Q
    ||||||||||||||||||||| ||||||||||| |  ||    | |||||||||||| ||| |||||| | |||||||||||| |||    
T  7766023 ctttcatcacccatatttcaattgtatcattagtagtatccttaacccatatactgagaaattctccagatacccacaaaccagaat 7765937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 229
Target Start/End: Complemental strand, 48870743 - 48870713
Alignment:
Q  199 aagccaaccaatgaatagccccattatagag 229  Q
    |||||||||||||||||||||||||||||||    
T  48870743 aagccaaccaatgaatagccccattatagag 48870713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 229
Target Start/End: Complemental strand, 48886429 - 48886399
Alignment:
Q  199 aagccaaccaatgaatagccccattatagag 229  Q
    |||||||||||||||||||||||||||||||    
T  48886429 aagccaaccaatgaatagccccattatagag 48886399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 195 - 236
Target Start/End: Original strand, 48147578 - 48147619
Alignment:
Q  195 tgaaaagccaaccaatgaatagccccattatagagtgaccct 236  Q
    ||||||||||||||||||||||||||| || | |||||||||    
T  48147578 tgaaaagccaaccaatgaatagccccactaaaaagtgaccct 48147619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 196 - 229
Target Start/End: Original strand, 50250637 - 50250670
Alignment:
Q  196 gaaaagccaaccaatgaatagccccattatagag 229  Q
    ||||||||||||||||||||||||||||| ||||    
T  50250637 gaaaagccaaccaatgaatagccccattaaagag 50250670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 7786845 - 7786813
Alignment:
Q  1 ctttcatcacccatatttcaactgtatcattag 33  Q
    ||||||||||||||||||||| |||||||||||    
T  7786845 ctttcatcacccatatttcaattgtatcattag 7786813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 7908581 - 7908549
Alignment:
Q  135 ttcctttccgttaaatcaaaggcaacaatgaca 167  Q
    ||||||||| |||||||||||||||||||||||    
T  7908581 ttcctttccattaaatcaaaggcaacaatgaca 7908549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 159
Target Start/End: Original strand, 45371866 - 45371906
Alignment:
Q  119 agacatctctaacagtttcctttccgttaaatcaaaggcaa 159  Q
    |||||||||||| ||||||| |||| |||||||||||||||    
T  45371866 agacatctctaaaagtttccgttccattaaatcaaaggcaa 45371906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 92; Significance: 9e-45; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 15349264 - 15349030
Alignment:
Q  1 ctttcatcacccatatttcaactgtatcattagcataatttgcagcccatatactgaaaaaatctccaaagacccacaaaccacaatcctgaggaatatg 100  Q
    |||||||||||||||||||||   ||||||||| |||||  | || ||| | ||| ||||| || |||||||||||||||||||||||   || |  |||    
T  15349264 ctttcatcacccatatttcaaagctatcattaggataatccgtagaccaaagactaaaaaattcgccaaagacccacaaaccacaatcaccagcatcatg 15349165  T
Q  101 ttccaaatcatctggaggagacatctctaacagtttcctttccgttaaatcaaaggcaacaatgacattatcataccatggatggaaatcacgatgaaaa 200  Q
    ||| |||||||||||||||| |||||| ||||||||||||||  |||||||||| |||||||| |  ||||||  ||| |||   |||||||||||||||    
T  15349164 ttcaaaatcatctggaggaggcatctcaaacagtttcctttcgtttaaatcaaatgcaacaataaagttatcacgccaagga---aaatcacgatgaaaa 15349068  T
Q  201 gccaaccaatgaatagccccattatagagtgaccctgc 238  Q
    |||||||||||||||||||||||||||||  |||||||    
T  15349067 gccaaccaatgaatagccccattatagagacaccctgc 15349030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 12195705 - 12195543
Alignment:
Q  1 ctttcatcacccatatttcaactgtatcattagcataatttgcagcccatatactgaaaaaatctccaaagacccacaaaccacaatcctgaggaatatg 100  Q
    |||||||| ||||||||||||||||   |||| || ||||   |  ||||| ||||| ||| | |||||| |||||||||||| ||| ||  |||  |||    
T  12195705 ctttcatctcccatatttcaactgtccgattatcaaaattcatattccatagactgagaaattttccaaatacccacaaaccataatgctctggaccatg 12195606  T
Q  101 ttccaaatcatctggaggagacatctctaacagtttcctttccgttaaatcaaaggcaacaat 163  Q
     ||  ||||||||||| |||  |||||||||| |||||||||| ||||||||||| |||||||    
T  12195605 gtcgtaatcatctggaagaggtatctctaacaatttcctttccattaaatcaaagacaacaat 12195543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 12440133 - 12439971
Alignment:
Q  1 ctttcatcacccatatttcaactgtatcattagcataatttgcagcccatatactgaaaaaatctccaaagacccacaaaccacaatcctgaggaatatg 100  Q
    |||||||| ||||||||||||||||   |||| || ||||   |  ||||| ||||| ||| | |||||| |||||||||||| ||| ||  |||  |||    
T  12440133 ctttcatctcccatatttcaactgtccgattatcaaaattcatattccatagactgagaaattttccaaatacccacaaaccataatgctctggaccatg 12440034  T
Q  101 ttccaaatcatctggaggagacatctctaacagtttcctttccgttaaatcaaaggcaacaat 163  Q
     ||  ||||||||||| |||  |||||||||| |||||||||| ||||||||||| |||||||    
T  12440033 gtcgtaatcatctggaagaggtatctctaacaatttcctttccattaaatcaaagacaacaat 12439971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 163
Target Start/End: Complemental strand, 12200619 - 12200561
Alignment:
Q  105 aaatcatctggaggagacatctctaacagtttcctttccgttaaatcaaaggcaacaat 163  Q
    |||||||||||| ||   ||||||| || |||||||||| |||||||||||||||||||    
T  12200619 aaatcatctggaagaagtatctctaccaatttcctttccattaaatcaaaggcaacaat 12200561  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 163
Target Start/End: Complemental strand, 12445047 - 12444989
Alignment:
Q  105 aaatcatctggaggagacatctctaacagtttcctttccgttaaatcaaaggcaacaat 163  Q
    |||||||||||| ||   ||||||| || |||||||||| |||||||||||||||||||    
T  12445047 aaatcatctggaagaagtatctctaccaatttcctttccattaaatcaaaggcaacaat 12444989  T

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Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 9120144 - 9120058
Alignment:
Q  1 ctttcatcacccatatttcaactgtatcattagcataatttgcagcccatatactgaaaaaatctccaaagacccacaaaccacaat 87  Q
    ||||||||||||||||||||||||||||||||||| |||    |||||||||||||| ||| |||||||| ||||||| | ||||||    
T  9120144 ctttcatcacccatatttcaactgtatcattagcaaaatccatagcccatatactgagaaattctccaaatacccacacatcacaat 9120058  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 179439 - 179364
Alignment:
Q  1 ctttcatcacccatatttcaactgtatcattagcataatttgcagcccatatactgaaaaaatctccaaagaccca 76  Q
    |||||||||||||||||||||||||||||||| ||||||    |||||||||||||| ||| | |||||| |||||    
T  179439 ctttcatcacccatatttcaactgtatcattatcataatccatagcccatatactgagaaattgtccaaataccca 179364  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 123 - 168
Target Start/End: Original strand, 42562129 - 42562174
Alignment:
Q  123 atctctaacagtttcctttccgttaaatcaaaggcaacaatgacat 168  Q
    |||||||  ||||||||||||||||||| |||||||||||| ||||    
T  42562129 atctctagaagtttcctttccgttaaatgaaaggcaacaataacat 42562174  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 224
Target Start/End: Complemental strand, 21016032 - 21015994
Alignment:
Q  186 aaatcacgatgaaaagccaaccaatgaatagccccatta 224  Q
    |||||| || |||||||||||||||||||||||||||||    
T  21016032 aaatcatgacgaaaagccaaccaatgaatagccccatta 21015994  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 163
Target Start/End: Complemental strand, 48884089 - 48884049
Alignment:
Q  123 atctctaacagtttcctttccgttaaatcaaaggcaacaat 163  Q
    ||||||||||||||| ||||| |||||||||||||| ||||    
T  48884089 atctctaacagtttcttttccattaaatcaaaggcagcaat 48884049  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 168
Target Start/End: Original strand, 11024220 - 11024344
Alignment:
Q  44 agcccatatactgaaaaaatctccaaagacccacaaaccacaatcctgaggaatatgttccaaatcatctggaggagacatctctaacagtttcctttcc 143  Q
    |||||||| ||||| ||| |||||||| | ||||||| ||||||||  |||   ||| || ||| ||||||||  || |||||| || |||| |||||||    
T  11024220 agcccatagactgagaaattctccaaatatccacaaatcacaatccataggttcatgatcaaaaccatctggaaaaggcatctccaaaagttccctttcc 11024319  T
Q  144 gttaaatcaaaggcaacaatgacat 168  Q
      |||||||||||||| ||| ||||    
T  11024320 actaaatcaaaggcaataataacat 11024344  T

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