View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5055_high_3 (Length: 407)

Name: NF5055_high_3
Description: NF5055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5055_high_3
NF5055_high_3
[»] chr2 (2 HSPs)
chr2 (76-203)||(24453901-24454028)
chr2 (203-254)||(24453826-24453877)
[»] chr5 (4 HSPs)
chr5 (78-196)||(13457814-13457933)
chr5 (78-196)||(31233476-31233594)
chr5 (203-260)||(31233625-31233682)
chr5 (204-259)||(13457727-13457782)
[»] chr3 (3 HSPs)
chr3 (90-196)||(23233752-23233859)
chr3 (78-159)||(33330676-33330755)
chr3 (204-260)||(23233891-23233946)


Alignment Details
Target: chr2 (Bit Score: 116; Significance: 7e-59; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 76 - 203
Target Start/End: Complemental strand, 24454028 - 24453901
Alignment:
Q  76 gatgttggttttatagggataggagagaaaaagtattatggaaatgttatattgaaagacagaaatatgtttataacgtcaaacataccattacaaatag 175  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  24454028 gatgttggttttatagggataggagagaaaaagtattatggaaatgttatattgaaagacagaaatatgtttataacatcaaacataccattacaaatag 24453929  T
Q  176 ttaagtactctataaatagaggtaaaac 203  Q
    || |||||||||||||||||| ||||||    
T  24453928 ttcagtactctataaatagagctaaaac 24453901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 203 - 254
Target Start/End: Complemental strand, 24453877 - 24453826
Alignment:
Q  203 ccctaaaattattgcccttaaaacaaaacataattgaaaaacaactcactaa 254  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  24453877 ccctaaaattattgcctttaaaacaaaacataattgaaaaacaactccctaa 24453826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 78 - 196
Target Start/End: Complemental strand, 13457933 - 13457814
Alignment:
Q  78 tgttggttttata-gggataggagagaaaaagtattatggaaatgttatattgaaagacagaaatatgtttataacgtcaaacataccattacaaatagt 176  Q
    ||||||||||| | |||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||| || ||||||||||| | |    
T  13457933 tgttggttttaaaagggatacgagagaaaaagtattatggaaatgatatattggaagacagaaatatgtttataacatcaagcacaccattacaaacact 13457834  T
Q  177 taagtactctataaatagag 196  Q
    | ||| ||||||||||||||    
T  13457833 tcagtgctctataaatagag 13457814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 78 - 196
Target Start/End: Original strand, 31233476 - 31233594
Alignment:
Q  78 tgttggttttatagggataggagagaaaaagtattatggaaatgttatattgaaagacagaaatatgtttataacgtcaaacataccattacaaatagtt 177  Q
    ||||||||||| ||||||| ||||||||||   ||||| ||||| ||||||   ||||| ||||||||||||||| |||| || ||||||||||| | ||    
T  31233476 tgttggttttaaagggatatgagagaaaaaaatttatgaaaatgatatatttgtagacaaaaatatgtttataacatcaagcacaccattacaaacactt 31233575  T
Q  178 aagtactctataaatagag 196  Q
     ||| || |||||||||||    
T  31233576 cagtgctttataaatagag 31233594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 203 - 260
Target Start/End: Original strand, 31233625 - 31233682
Alignment:
Q  203 ccctaaaattattgcccttaaaacaaaacataattgaaaaacaactcactaatgtctc 260  Q
    |||||||||||||| | | |||||||||||||||||||||||||||||||||| ||||    
T  31233625 ccctaaaattattgtcttcaaaacaaaacataattgaaaaacaactcactaatatctc 31233682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 204 - 259
Target Start/End: Complemental strand, 13457782 - 13457727
Alignment:
Q  204 cctaaaattattgcccttaaaacaaaacataattgaaaaacaactcactaatgtct 259  Q
    ||||||||||||  | ||||||||||| |||| |||||||||||||||||||||||    
T  13457782 cctaaaattattatctttaaaacaaaagataactgaaaaacaactcactaatgtct 13457727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 90 - 196
Target Start/End: Original strand, 23233752 - 23233859
Alignment:
Q  90 agggataggagagaaaaagtattatggaaatgttatattgaaagacagaaatatgtttataacgtcaaacataccattaca-aatagttaagtactctat 188  Q
    ||||||| |||||||||||||||||||||||| ||||||  |||||||||||| ||||||||| ||||||| ||||||||| |||| || ||| | ||||    
T  23233752 agggatatgagagaaaaagtattatggaaatgatatattagaagacagaaataagtttataacatcaaacacaccattacacaatactttagtgccctat 23233851  T
Q  189 aaatagag 196  Q
    ||||||||    
T  23233852 aaatagag 23233859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 78 - 159
Target Start/End: Complemental strand, 33330755 - 33330676
Alignment:
Q  78 tgttggttttatagggataggagagaaaaagtattatggaaatgttatattgaaagacagaaatatgtttataacgtcaaac 159  Q
    ||||||||||| ||| ||| ||||||||| ||| ||||||||||  |||| | |||||||||||||||||||||| ||||||    
T  33330755 tgttggttttaaagg-atatgagagaaaa-gtaatatggaaatgacatatcggaagacagaaatatgtttataacatcaaac 33330676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 260
Target Start/End: Original strand, 23233891 - 23233946
Alignment:
Q  204 cctaaaattattgcccttaaaacaaaacataattgaaaaacaactcactaatgtctc 260  Q
    ||||||||||||| | |||||||||||||||| || ||||||||||||| |||||||    
T  23233891 cctaaaattattgtctttaaaacaaaacataactg-aaaacaactcactgatgtctc 23233946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University