View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5055_high_7 (Length: 380)
Name: NF5055_high_7
Description: NF5055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5055_high_7 |
 | |
|
| [»] scaffold0018 (2 HSPs) |
| | |
|
| [»] scaffold0099 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0018 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 11 - 365
Target Start/End: Original strand, 139636 - 139990
Alignment:
| Q |
11 |
cataggaactatcacacacaatgaagcaacactggcaagtgaattcagtgacacaataaagaacattcctatcatgtctctaacttcattcgcagccaaa |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
139636 |
cataggaactatcacacacaatgaagcaacactggcaagtgaattcagtgacacaataaagaacattccaatcatgtctctaacttcattcgcagccaaa |
139735 |
T |
|
| Q |
111 |
ccagaattattatctccaagattgccacatttcattcaagtaggggatgatattaaccttcacatgcaatgcattgcagcaattgtaggaaaattcaaat |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |
|
|
| T |
139736 |
ccagaattattatctccaagattgccacatttcattaaagtaggggatgatattaaccttcacatgcaatgcattgcagcaattgtaggagaattcagat |
139835 |
T |
|
| Q |
211 |
ggaaaaaggtgacagtaatttatgaacttaataatgacttggcctcggatccggggatactactaagcctctcttattcccttagacttgttggttctga |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
139836 |
ggaaaaaggtgacagtaatttatgaacttaataatgacttggcctcggatccggggatactactaagcctctcttattcccttagacttgttggttctga |
139935 |
T |
|
| Q |
311 |
gattgataaccatttagcttttccttcgttatcaactctttcagatccaaaatct |
365 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
139936 |
gattgataaccatttagcttttccttcgttagcaactctttcagatccaaaatct |
139990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 12 - 365
Target Start/End: Original strand, 148246 - 148599
Alignment:
| Q |
12 |
ataggaactatcacacacaatgaagcaacactggcaagtgaattcagtgacacaataaagaacattcctatcatgtctctaacttcattcgcagccaaac |
111 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
148246 |
ataggaactactacacacagcgaagcaacactggcaagtaaattcagtgacaccataaagaacattcctatcatatctctaacttcacctatgaacaaac |
148345 |
T |
|
| Q |
112 |
cagaattattatctccaagattgccacatttcattcaagtaggggatgatattaaccttcacatgcaatgcattgcagcaattgtaggaaaattcaaatg |
211 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||| ||| |||||||||||||||||| |||| ||||| |
|
|
| T |
148346 |
cagaattattatctcctagattgccacatttcatccaagtaggggatgatattaacctccacatgagatgtattgcagcaattgtaggagaatttaaatg |
148445 |
T |
|
| Q |
212 |
gaaaaaggtgacagtaatttatgaacttaataatgacttggcctcggatccggggatactactaagcctctcttattcccttagacttgttggttctgag |
311 |
Q |
| |
|
|||||| |||| |||||||||| ||||||||||||| || |||| ||||| | |||||||| |||||||||||||| || |||||||||||||||||| |
|
|
| T |
148446 |
gaaaaaagtgatagtaatttattaacttaataatgatttttcctctgatccagaaatactacttagcctctcttattctctaagacttgttggttctgag |
148545 |
T |
|
| Q |
312 |
attgataaccatttagcttttccttcgttatcaactctttcagatccaaaatct |
365 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
148546 |
attgatgaccatttagcttttccttcgttatcaacactttcagacccaaaatct |
148599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 144; Significance: 1e-75; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 13 - 355
Target Start/End: Original strand, 24896960 - 24897305
Alignment:
| Q |
13 |
taggaactatcacacacaatgaagcaacactggcaagtgaattcagtgacacaataaagaacattcctatcatgtctctaacttcattcgcagccaaacc |
112 |
Q |
| |
|
||||||| || |||||||| ||||||||| | || |||||| ||| |||| |||||||||| ||||||| |||||||||||||||| || | || || |
|
|
| T |
24896960 |
taggaacgattacacacaacgaagcaacaattgctagtgaactcaacgacaacataaagaacactcctatcttgtctctaacttcatttgctggcagaca |
24897059 |
T |
|
| Q |
113 |
agaattattatctccaagattgccacatttcattcaagtaggggatgatattaaccttcacatgcaatgcattgcagcaattgtaggaaaattcaaatgg |
212 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||| |||| ||||||||||||| |||||| |||||||||||||||||||||||| |||||| |||| |
|
|
| T |
24897060 |
agaattattatctcctagattgccacatttcatccaattaggagatgatattaaccatcacatccaatgcattgcagcaattgtaggagaattcagatgg |
24897159 |
T |
|
| Q |
213 |
aaaaaggtgacagtaatttatgaacttaataat---gacttggcctcggatccggggatactactaagcctctcttattcccttagacttgttggttctg |
309 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| ||||| |||| ||||| | ||| |||| | |||||| |||| || | |||||||||||||| |
|
|
| T |
24897160 |
aaaaaggtgacagtaatttatgaacataataatgacgacttttcctctgatccagaaataatactttgtctctctaattctctcaaacttgttggttctg |
24897259 |
T |
|
| Q |
310 |
agattgataaccatttagcttttccttcgttatcaactctttcaga |
355 |
Q |
| |
|
| ||||| | |||||||||||||||||| ||||| || |||||||| |
|
|
| T |
24897260 |
aaattgaaagccatttagcttttccttctttatccacactttcaga |
24897305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 13 - 355
Target Start/End: Original strand, 24909063 - 24909408
Alignment:
| Q |
13 |
taggaactatcacacacaatgaagcaacactggcaagtgaattcagtgacacaataaagaacattcctatcatgtctctaacttcattcgcagccaaacc |
112 |
Q |
| |
|
||||||| || |||||||| ||||||||||| || ||||||||| |||| |||||||||| ||||||| |||||||||||||||| || | || || |
|
|
| T |
24909063 |
taggaacgattacacacaacgaagcaacacttgctagtgaattcgacgacaacataaagaacactcctatcttgtctctaacttcatttgctggcagaca |
24909162 |
T |
|
| Q |
113 |
agaattattatctccaagattgccacatttcattcaagtaggggatgatattaaccttcacatgcaatgcattgcagcaattgtaggaaaattcaaatgg |
212 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||| | || ||||||||||||| |||||| |||||||||||||||||||||||| |||||| |||| |
|
|
| T |
24909163 |
agaattattatctcctagattgccacatttcatccaactcggagatgatattaaccatcacatccaatgcattgcagcaattgtaggagaattcagatgg |
24909262 |
T |
|
| Q |
213 |
aaaaaggtgacagtaatttatgaacttaataatg---acttggcctcggatccggggatactactaagcctctcttattcccttagacttgttggttctg |
309 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||| |||| |||| ||||| | ||| |||| |||||||| |||| |||| ||||| |||||||| |
|
|
| T |
24909263 |
aaaaaggtggcagtaatttatgaacataataatgactacttttcctctgatccagaaataatacttagcctctccaattctcttaaacttgctggttctg |
24909362 |
T |
|
| Q |
310 |
agattgataaccatttagcttttccttcgttatcaactctttcaga |
355 |
Q |
| |
|
| ||||| | |||||||||| ||||||| ||||| || |||||||| |
|
|
| T |
24909363 |
aaattgaaagccatttagctattccttctttatccacactttcaga |
24909408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 13 - 355
Target Start/End: Original strand, 24986566 - 24986911
Alignment:
| Q |
13 |
taggaactatcacacacaatgaagcaacactggcaagtgaattcagtgacacaataaagaacattcctatcatgtctctaacttcattcgcagccaaacc |
112 |
Q |
| |
|
||||||| || |||||||| ||||||||||| || ||||||||| |||| |||||||||| ||||||| |||||||||||||||| || | || || |
|
|
| T |
24986566 |
taggaacgattacacacaaagaagcaacacttgctagtgaattcgacgacaacataaagaacaatcctatcttgtctctaacttcatttgctggcagaca |
24986665 |
T |
|
| Q |
113 |
agaattattatctccaagattgccacatttcattcaagtaggggatgatattaaccttcacatgcaatgcattgcagcaattgtaggaaaattcaaatgg |
212 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||| | | ||||||||||||| |||||| |||||||||||||||||||||||| |||||| |||| |
|
|
| T |
24986666 |
agaattattatctcctagattgccacatttcatccaactcagagatgatattaaccatcacatccaatgcattgcagcaattgtaggagaattcagatgg |
24986765 |
T |
|
| Q |
213 |
aaaaaggtgacagtaatttatgaacttaataat---gacttggcctcggatccggggatactactaagcctctcttattcccttagacttgttggttctg |
309 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||| ||||| |||| ||||| | ||| |||| |||||||| |||| |||| ||||| |||||||| |
|
|
| T |
24986766 |
aaaaaggtggcagtaatttatgaacataataatgacgacttttcctctgatccagaaataatacttagcctctccaattctcttaaacttgctggttctg |
24986865 |
T |
|
| Q |
310 |
agattgataaccatttagcttttccttcgttatcaactctttcaga |
355 |
Q |
| |
|
| ||||| | |||||||||| ||||||| ||||| || |||||||| |
|
|
| T |
24986866 |
aaattgaaagccatttagctattccttctttatccacactttcaga |
24986911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0099 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0099
Description:
Target: scaffold0099; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 85 - 245
Target Start/End: Original strand, 22739 - 22904
Alignment:
| Q |
85 |
tgtctctaacttcattcgcagccaaaccagaa-ttattatctccaagattgccacatttcattcaagtaggggatgatattaaccttca-catgc-aatg |
181 |
Q |
| |
|
|||||||||||||||| || | || || |||| ||||||||||| ||||||||||||||||| ||| | | ||||||||||||| ||| ||| | |||| |
|
|
| T |
22739 |
tgtctctaacttcatttgctggcagacaagaaattattatctcctagattgccacatttcatccaactcagagatgatattaaccatcaacatcccaatg |
22838 |
T |
|
| Q |
182 |
cattgcagcaattgtaggaaaattcaaatgg-aaaaaggtgacag-taatttatgaacttaataat |
245 |
Q |
| |
|
||||||||||||||||||| |||||| |||| ||||||||| ||| |||||||||||| ||||||| |
|
|
| T |
22839 |
cattgcagcaattgtaggagaattcagatggaaaaaaggtggcagttaatttatgaacataataat |
22904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University