View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5055_low_10 (Length: 332)
Name: NF5055_low_10
Description: NF5055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5055_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 17 - 320
Target Start/End: Original strand, 37156040 - 37156343
Alignment:
| Q |
17 |
ggaagatctatttttagatccggcagaacattaatatatagccatgcatgcaacttttttgaggagcnnnnnnnnngggcaaccttcttgaatttggaat |
116 |
Q |
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| T |
37156040 |
ggaagatctatttttagatccggcagaacattaatatatagccatgcatgcaacttttttgaggagctttttttttgggcaaccttcttgaatttggaat |
37156139 |
T |
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| Q |
117 |
ttctttttaaacataacctaactaggaaattttaatttgtctagaaaataataacatattttaaattgaaataaaaaattgtgttcaagtgcttaataaa |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |
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| T |
37156140 |
ttctttttaaacataacctaactaggaaattttaatttgtctagaaaataataacatattttatattgaaataacaaattgtgttcaagtgcttaataaa |
37156239 |
T |
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| Q |
217 |
ctttagcctcggtggtgtctaacactcacacgacatcgacatttgtaattatattaaaatatgnnnnnnnncaaaatttcatcaatgtttacgtgttcgt |
316 |
Q |
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| T |
37156240 |
ctttaacttcggtggtgtctaacatcgacacgacatccacatttgtaattacaataaaatgttttttttttcaaaatttcatcaatgtttacgtgttggt |
37156339 |
T |
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| Q |
317 |
gtct |
320 |
Q |
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|||| |
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| T |
37156340 |
gtct |
37156343 |
T |
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