View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5055_low_11 (Length: 330)
Name: NF5055_low_11
Description: NF5055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5055_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 13 - 281
Target Start/End: Complemental strand, 29435213 - 29434945
Alignment:
| Q |
13 |
ggacatcatcatgattccctgcatgaacatccaatgaaatatgaaaaattaacacatgtggatcatgtggtaggtttcaagtagagttttcctatccatt |
112 |
Q |
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| T |
29435213 |
ggacatcatcatgattccctgcatgaacaaccaatgaaatatgaaaaattaacacgtgtggatcatgtggtaggtttcaagtagagttttcctatccatt |
29435114 |
T |
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| Q |
113 |
tgttcttacaatgattccagctcctgtaacgattcccataaggaaatttggaacaagcgaagctacaaccatcatgatactctcgatcactgagaggcat |
212 |
Q |
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| T |
29435113 |
tgttcttacaatgattccagctcctgtaacgattcccataaggaaatttggaacaagcgaagctacaaccatcatgatactctcgatcactgagaggcat |
29435014 |
T |
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| Q |
213 |
ccatagacgttaagagtgaaaaacacatagtgaatgaatcctggcctgaatttcaccatgctatatgtg |
281 |
Q |
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| T |
29435013 |
ccatagacgttaagagtgaaaaacacatagtgaatgaatcctggcctgaatttcaccatgttatatgtg |
29434945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 16 - 281
Target Start/End: Complemental strand, 29468426 - 29468168
Alignment:
| Q |
16 |
catcatcatgattccctgcatgaacatccaatgaaatatgaaaaattaacacatgtggatcatgtggtaggtttcaagtagagttttcctatccatttgt |
115 |
Q |
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| T |
29468426 |
catcatcatgattccctgcatgaataac-aat---atatgacaaattaacacatggggatcatgtggtaggtttcaagtagaattttcg---ccatttgt |
29468334 |
T |
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| Q |
116 |
tcttacaatgattccagctcctgtaacgattcccataaggaaatttggaacaagcgaagctacaaccatcatgatactctcgatcactgagaggcatcca |
215 |
Q |
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| T |
29468333 |
tcttacaatgattccagctcctgtaatgattcccatgagaaaatttggaacaagtgcagctacaaccatcatgagactctcaatcactgagatgcatccg |
29468234 |
T |
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| Q |
216 |
tagacgttaagagtgaaaaacacatagtgaatgaatcctggcctgaatttcaccatgctatatgtg |
281 |
Q |
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| T |
29468233 |
tagatgttaatagtgaaaaacgcatagtgaatgaatccgggtctgaatttcaccatgttatatgtg |
29468168 |
T |
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