View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5055_low_12 (Length: 301)

Name: NF5055_low_12
Description: NF5055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5055_low_12
NF5055_low_12
[»] chr3 (18 HSPs)
chr3 (20-290)||(49786770-49787033)
chr3 (230-297)||(40793203-40793270)
chr3 (205-287)||(4489857-4489939)
chr3 (223-297)||(28939697-28939771)
chr3 (201-286)||(35424134-35424219)
chr3 (203-286)||(1995580-1995663)
chr3 (226-297)||(11467227-11467298)
chr3 (223-278)||(49644383-49644438)
chr3 (201-278)||(35496109-35496186)
chr3 (203-290)||(36177221-36177308)
chr3 (249-290)||(29096158-29096199)
chr3 (202-290)||(45266880-45266969)
chr3 (202-286)||(15877760-15877844)
chr3 (202-286)||(35846159-35846243)
chr3 (252-290)||(7352127-7352165)
chr3 (249-290)||(14898467-14898508)
chr3 (253-286)||(52313937-52313970)
chr3 (253-286)||(53464347-53464380)
[»] chr2 (17 HSPs)
chr2 (202-286)||(9104573-9104657)
chr2 (201-286)||(18565751-18565836)
chr2 (202-290)||(40095798-40095886)
chr2 (222-296)||(14657513-14657587)
chr2 (205-278)||(32914478-32914551)
chr2 (202-290)||(4897248-4897336)
chr2 (202-290)||(4944642-4944730)
chr2 (206-286)||(39375719-39375799)
chr2 (251-297)||(3384731-3384777)
chr2 (203-241)||(37258158-37258196)
chr2 (226-290)||(8322179-8322243)
chr2 (224-290)||(5147128-5147194)
chr2 (202-267)||(37069932-37069997)
chr2 (203-287)||(3739874-3739958)
chr2 (202-286)||(6858994-6859078)
chr2 (218-278)||(29984902-29984962)
chr2 (250-290)||(33386719-33386759)
[»] scaffold0015 (1 HSPs)
scaffold0015 (203-286)||(56599-56682)
[»] chr4 (15 HSPs)
chr4 (224-290)||(38567974-38568040)
chr4 (205-290)||(41377389-41377474)
chr4 (205-290)||(55875849-55875934)
chr4 (202-286)||(23560017-23560101)
chr4 (203-290)||(5415180-5415267)
chr4 (202-286)||(779897-779981)
chr4 (250-297)||(7907407-7907454)
chr4 (249-296)||(43355013-43355060)
chr4 (223-290)||(46382024-46382091)
chr4 (205-278)||(52327028-52327101)
chr4 (249-297)||(34388850-34388898)
chr4 (223-286)||(55876020-55876083)
chr4 (249-283)||(9268381-9268415)
chr4 (201-262)||(43264456-43264517)
chr4 (203-290)||(48262993-48263084)
[»] chr8 (10 HSPs)
chr8 (201-286)||(40278976-40279061)
chr8 (203-290)||(11425490-11425577)
chr8 (250-290)||(27594274-27594314)
chr8 (250-290)||(35158923-35158963)
chr8 (201-286)||(1156284-1156369)
chr8 (251-287)||(34954345-34954381)
chr8 (222-278)||(37479212-37479268)
chr8 (203-286)||(17312863-17312945)
chr8 (249-283)||(9682374-9682408)
chr8 (202-286)||(18227011-18227095)
[»] chr1 (13 HSPs)
chr1 (205-286)||(7900161-7900242)
chr1 (202-286)||(1035747-1035831)
chr1 (226-286)||(19322831-19322891)
chr1 (202-286)||(37457626-37457710)
chr1 (249-290)||(26707131-26707172)
chr1 (201-290)||(51613256-51613345)
chr1 (198-290)||(10574370-10574462)
chr1 (202-286)||(19993387-19993471)
chr1 (202-286)||(50428489-50428573)
chr1 (203-286)||(43496401-43496484)
chr1 (249-283)||(46823646-46823680)
chr1 (205-290)||(47394377-47394462)
chr1 (202-286)||(23571018-23571102)
[»] chr6 (6 HSPs)
chr6 (202-290)||(2844143-2844231)
chr6 (223-297)||(10682508-10682582)
chr6 (202-283)||(13685397-13685478)
chr6 (202-272)||(30775353-30775423)
chr6 (250-290)||(19763591-19763631)
chr6 (249-297)||(19789280-19789328)
[»] chr7 (13 HSPs)
chr7 (206-297)||(29681415-29681506)
chr7 (203-290)||(44396395-44396482)
chr7 (203-287)||(43692561-43692645)
chr7 (203-287)||(49081247-49081331)
chr7 (223-290)||(43598833-43598900)
chr7 (205-278)||(48252907-48252980)
chr7 (230-290)||(36725798-36725858)
chr7 (224-290)||(36118058-36118124)
chr7 (203-287)||(38346409-38346494)
chr7 (205-286)||(49080771-49080851)
chr7 (223-290)||(12879278-12879345)
chr7 (250-286)||(8404797-8404833)
chr7 (246-286)||(37626915-37626955)
[»] chr5 (7 HSPs)
chr5 (224-290)||(14593889-14593955)
chr5 (202-297)||(39060199-39060294)
chr5 (249-297)||(4925116-4925164)
chr5 (202-286)||(34769580-34769664)
chr5 (225-286)||(34383710-34383771)
chr5 (249-290)||(35470332-35470373)
chr5 (250-286)||(9959328-9959364)
[»] scaffold0110 (2 HSPs)
scaffold0110 (202-267)||(13803-13868)
scaffold0110 (202-267)||(21540-21605)


Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 20 - 290
Target Start/End: Original strand, 49786770 - 49787033
Alignment:
Q  20 ctctatgattcagcgggccacttgatcaatctctgtggtatatgatatatatacacattacttctagcatatcagtgttctcttttctagcttactactc 119  Q
    |||||||||||||||||||||||||||||||||||||||||||         | ||||||||||||||||||||||||||||||||||||||||||||||    
T  49786770 ctctatgattcagcgggccacttgatcaatctctgtggtatat---------atacattacttctagcatatcagtgttctcttttctagcttactactc 49786860  T
Q  120 atttccctttgccaaattattaatcgtatcttgtt-agagcaac-acatggtccacatccatgccacccatatgataatgataagtggtataaatgggac 217  Q
    |||||||||||||||||||||||| ||||||| || |||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||    
T  49786861 atttccctttgccaaattattaattgtatcttttttagagcaaccacatggtccccatccatgccacccatatgataatgatgagtggtataaatgggac 49786960  T
Q  218 tcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcat 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  49786961 tcatataatatattatattatttcttacatctcaattatttaaaccactcaactatattttataaatattcat 49787033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 230 - 297
Target Start/End: Original strand, 40793203 - 40793270
Alignment:
Q  230 ttatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcatctcactc 297  Q
    |||||||| |||| || | |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  40793203 ttatattacttctcacttttcaattatttaaaccactcaactacattttataaatattcatatcactc 40793270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 205 - 287
Target Start/End: Complemental strand, 4489939 - 4489857
Alignment:
Q  205 gtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatatt 287  Q
    ||||||||||||| ||||||||||||||||||||||  || ||  |||||||||| ||||||||| || ||||||||||||||    
T  4489939 gtataaatgggacacatataatatattatattattttatatattccaattatttataccactcaattatattttataaatatt 4489857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 223 - 297
Target Start/End: Original strand, 28939697 - 28939771
Alignment:
Q  223 taatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcatctcactc 297  Q
    ||||||||||||||| |||  || |||||||||||||||| ||||||||||||||| ||||||||||| ||||||    
T  28939697 taatatattatattacttcacacttctcaattatttaaactactcaactacattttctaaatattcatatcactc 28939771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 201 - 286
Target Start/End: Original strand, 35424134 - 35424219
Alignment:
Q  201 agtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatat 286  Q
    ||||||||||||||| |||| |||||| ||||||||| |||  |  | |||||||||||||||||||||||||||||| |||||||    
T  35424134 agtggtataaatgggtctcacataatacattatattacttcacatttttcaattatttaaaccactcaactacattttctaaatat 35424219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 286
Target Start/End: Original strand, 1995580 - 1995663
Alignment:
Q  203 tggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatat 286  Q
    ||||||||||||| | || |||||| ||||||||| |||  || || ||||||||||||||||| ||||||||||| |||||||    
T  1995580 tggtataaatgggtcccacataatacattatattacttcacacttcccaattatttaaaccacttaactacattttctaaatat 1995663  T

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Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 226 - 297
Target Start/End: Original strand, 11467227 - 11467298
Alignment:
Q  226 tatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcatctcactc 297  Q
    |||||||||||| |||  || |||||||||||||||||| ||||||||||||| ||||||| ||| ||||||    
T  11467227 tatattatattacttcacacttctcaattatttaaaccaatcaactacattttctaaatatccatatcactc 11467298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 223 - 278
Target Start/End: Complemental strand, 49644438 - 49644383
Alignment:
Q  223 taatatattatattatttcttacatctcaattatttaaaccactcaactacatttt 278  Q
    ||||||||||||||| |||  || ||||||||||||||||||||||||||||||||    
T  49644438 taatatattatattacttcacacttctcaattatttaaaccactcaactacatttt 49644383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 278
Target Start/End: Original strand, 35496109 - 35496186
Alignment:
Q  201 agtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacatttt 278  Q
    ||||||||||||||| |  | |||||||||||||||| |||  || ||||||||||||||| || |||||||||||||    
T  35496109 agtggtataaatgggtcctacataatatattatattacttcacacttctcaattatttaaatcattcaactacatttt 35496186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 290
Target Start/End: Complemental strand, 36177308 - 36177221
Alignment:
Q  203 tggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcat 290  Q
    ||||||||||||| | || |||||| ||||||||| |||  || |  ||||||||| ||||||||| ||||||||| |||||||||||    
T  36177308 tggtataaatgggtcccacataatagattatattacttcacactttccaattatttgaaccactcatctacattttttaaatattcat 36177221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 249 - 290
Target Start/End: Original strand, 29096158 - 29096199
Alignment:
Q  249 tcaattatttaaaccactcaactacattttataaatattcat 290  Q
    |||||||||||||||||||||||||||| | |||||||||||    
T  29096158 tcaattatttaaaccactcaactacattatttaaatattcat 29096199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 290
Target Start/End: Complemental strand, 45266969 - 45266880
Alignment:
Q  202 gtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaacta-cattttataaatattcat 290  Q
    |||||||||||||| | ||   |||| |||||||||||||  || ||||||| |||||||||||| ||||| |||||| |||||||||||    
T  45266969 gtggtataaatgggtcacaccgaatacattatattatttcacacttctcaatcatttaaaccactaaactagcattttctaaatattcat 45266880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 286
Target Start/End: Original strand, 15877760 - 15877844
Alignment:
Q  202 gtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatat 286  Q
    |||||||||||||| | || |||||| ||||||||| |||  |  | || ||||||||||||||||||||| ||||| |||||||    
T  15877760 gtggtataaatgggtcccacataatacattatattacttcacatttttccattatttaaaccactcaactatattttctaaatat 15877844  T

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Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 286
Target Start/End: Original strand, 35846159 - 35846243
Alignment:
Q  202 gtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatat 286  Q
    |||| ||||||||| ||||  |||||  |||||||||||   || | |||||||||||||||| ||||||||||||| |||||||    
T  35846159 gtggaataaatgggtctcacgtaatactttatattattttacacttttcaattatttaaaccattcaactacattttctaaatat 35846243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 290
Target Start/End: Complemental strand, 7352165 - 7352127
Alignment:
Q  252 attatttaaaccactcaactacattttataaatattcat 290  Q
    ||||||||||||| ||||||||||||| |||||||||||    
T  7352165 attatttaaaccattcaactacattttttaaatattcat 7352127  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 290
Target Start/End: Complemental strand, 14898508 - 14898467
Alignment:
Q  249 tcaattatttaaaccactcaactacattttataaatattcat 290  Q
    |||||| ||||||||||| ||||||||||| |||||||||||    
T  14898508 tcaattgtttaaaccactaaactacattttctaaatattcat 14898467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 286
Target Start/End: Original strand, 52313937 - 52313970
Alignment:
Q  253 ttatttaaaccactcaactacattttataaatat 286  Q
    |||||||||||||||||||||||||| |||||||    
T  52313937 ttatttaaaccactcaactacattttctaaatat 52313970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 286
Target Start/End: Original strand, 53464347 - 53464380
Alignment:
Q  253 ttatttaaaccactcaactacattttataaatat 286  Q
    |||||||||||||||||||||||||| |||||||    
T  53464347 ttatttaaaccactcaactacattttctaaatat 53464380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 202 - 286
Target Start/End: Original strand, 9104573 - 9104657
Alignment:
Q  202 gtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatat 286  Q
    |||||||||||||| ||||| |||||| ||||||||||||  |  |||||||||||||||||||||||||||||||| |||||||    
T  9104573 gtggtataaatgggtctcatctaatattttatattatttcacaattctcaattatttaaaccactcaactacattttttaaatat 9104657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 201 - 286
Target Start/End: Complemental strand, 18565836 - 18565751
Alignment:
Q  201 agtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatat 286  Q
    ||||||||||||||| ||||||||||| ||||||||| ||   || |||||||||||||||  ||||||||||||||| |||||||    
T  18565836 agtggtataaatgggtctcatataatacattatattactttcgacttctcaattatttaaatgactcaactacattttttaaatat 18565751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 202 - 290
Target Start/End: Complemental strand, 40095886 - 40095798
Alignment:
Q  202 gtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcat 290  Q
    |||||||||||||  | ||| ||||||||||||||| ||   || |||||||||||||||| ||||||||||||||| |||||||||||    
T  40095886 gtggtataaatggaccccatctaatatattatattactttacacttctcaattatttaaactactcaactacattttttaaatattcat 40095798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 222 - 296
Target Start/End: Complemental strand, 14657587 - 14657513
Alignment:
Q  222 ataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcatctcact 296  Q
    |||||| |||||||||||||  || |  ||||||||||||||||||||||||||||| ||||||||||| |||||    
T  14657587 ataatacattatattatttcacactttccaattatttaaaccactcaactacattttctaaatattcatatcact 14657513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 205 - 278
Target Start/End: Complemental strand, 32914551 - 32914478
Alignment:
Q  205 gtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacatttt 278  Q
    ||||||||||| | |||||||||| |||||||| |||  || | ||||||||||||||||||||||||||||||    
T  32914551 gtataaatgggtcccatataatattttatattacttcacacttttcaattatttaaaccactcaactacatttt 32914478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 202 - 290
Target Start/End: Complemental strand, 4897336 - 4897248
Alignment:
Q  202 gtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcat 290  Q
    |||||||||||||  | |||||||||||||| |||| |||  |  | |||||||||||||| ||||||||||||||| |||||||||||    
T  4897336 gtggtataaatggatcacatataatatattacattacttcacatttttcaattatttaaactactcaactacattttctaaatattcat 4897248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 202 - 290
Target Start/End: Complemental strand, 4944730 - 4944642
Alignment:
Q  202 gtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcat 290  Q
    |||||||||||||  | |||||||||||||| |||| |||  |  | |||||||||||||| ||||||||||||||| |||||||||||    
T  4944730 gtggtataaatggatcacatataatatattacattacttcacatttttcaattatttaaactactcaactacattttctaaatattcat 4944642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 206 - 286
Target Start/End: Complemental strand, 39375799 - 39375719
Alignment:
Q  206 tataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatat 286  Q
    |||||||| | ||||||||||||||||||||| ||| ||  |  ||||||||||||||||||||||| ||||| |||||||    
T  39375799 tataaatgagtctcatataatatattatattacttcatattttccaattatttaaaccactcaactatattttttaaatat 39375719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 297
Target Start/End: Original strand, 3384731 - 3384777
Alignment:
Q  251 aattatttaaaccactcaactacattttataaatattcatctcactc 297  Q
    |||||||||||| | ||||||||||||||||||||||||| ||||||    
T  3384731 aattatttaaacaattcaactacattttataaatattcatatcactc 3384777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 241
Target Start/End: Original strand, 37258158 - 37258196
Alignment:
Q  203 tggtataaatgggactcatataatatattatattatttc 241  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  37258158 tggtataaatgggtctcatataatatattatattatttc 37258196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 290
Target Start/End: Complemental strand, 8322243 - 8322179
Alignment:
Q  226 tatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcat 290  Q
    |||||||||||| |||  || | ||||||||||||||||||||| ||||||||  ||||||||||    
T  8322243 tatattatattacttcacacttttcaattatttaaaccactcaattacatttttcaaatattcat 8322179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 290
Target Start/End: Original strand, 5147128 - 5147194
Alignment:
Q  224 aatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcat 290  Q
    ||||||||||||||| ||  || || | |||||||||| || ||||||||||||| |||||||||||    
T  5147128 aatatattatattatctcacacttccctattatttaaatcattcaactacattttctaaatattcat 5147194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 267
Target Start/End: Complemental strand, 37069997 - 37069932
Alignment:
Q  202 gtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactc 267  Q
    |||||||||||||| | || |||||||| ||||||||||   || || ||||||||||||||||||    
T  37069997 gtggtataaatgggtcccacataatataatatattattttacacttcccaattatttaaaccactc 37069932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 287
Target Start/End: Complemental strand, 3739958 - 3739874
Alignment:
Q  203 tggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatatt 287  Q
    |||||||||| || |||| |||||| ||||||||||||  ||  | ||||||||||||| || ||| |||||| || ||||||||    
T  3739958 tggtataaataggtctcacataatacattatattattttatatttttcaattatttaaatcattcatctacatattctaaatatt 3739874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 286
Target Start/End: Original strand, 6858994 - 6859078
Alignment:
Q  202 gtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatat 286  Q
    |||||||||||||| | ||  ||||| | ||||||| |||  || || ||||||||||||||||| ||||| ||||| |||||||    
T  6858994 gtggtataaatgggtcccacgtaatacaatatattacttcacacttcccaattatttaaaccactaaactatattttctaaatat 6859078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 278
Target Start/End: Original strand, 29984902 - 29984962
Alignment:
Q  218 tcatataatatattatattatttcttacatctcaattatttaaaccactcaactacatttt 278  Q
    |||| |||| |||||||||||||  ||| ||| |||||||||||| ||||||||| |||||    
T  29984902 tcatttaatttattatattattttatacttcttaattatttaaacaactcaactaaatttt 29984962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 290
Target Start/End: Original strand, 33386719 - 33386759
Alignment:
Q  250 caattatttaaaccactcaactacattttataaatattcat 290  Q
    |||||||||||||||||||| | |||||| |||||||||||    
T  33386719 caattatttaaaccactcaattgcattttctaaatattcat 33386759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 203 - 286
Target Start/End: Complemental strand, 56682 - 56599
Alignment:
Q  203 tggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatat 286  Q
    ||||||||||||||| || |||||||||||||||| ||   || |||||||||||||||||||||||||||||||| |||||||    
T  56682 tggtataaatgggacccacataatatattatattactttacacttctcaattatttaaaccactcaactacattttctaaatat 56599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 224 - 290
Target Start/End: Complemental strand, 38568040 - 38567974
Alignment:
Q  224 aatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcat 290  Q
    |||||||||||||| ||||||| | |||||||||||||||||||||||||||||| |||||||||||    
T  38568040 aatatattatattacttcttacttttcaattatttaaaccactcaactacattttttaaatattcat 38567974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 205 - 290
Target Start/End: Complemental strand, 41377474 - 41377389
Alignment:
Q  205 gtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcat 290  Q
    ||||||||||| || | |||||||||||||||| |||  || |||||||||||| ||| ||||||||||||||| |||||||||||    
T  41377474 gtataaatgggtcttacataatatattatattacttcccacttctcaattattttaactactcaactacattttttaaatattcat 41377389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 205 - 290
Target Start/End: Complemental strand, 55875934 - 55875849
Alignment:
Q  205 gtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcat 290  Q
    ||||||||||| | || |||||| ||||||||| |||  |  ||||||||| |||||||||||||||||||||| |||||||||||    
T  55875934 gtataaatgggtcccacataataaattatattacttcacatctctcaattacttaaaccactcaactacattttttaaatattcat 55875849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 202 - 286
Target Start/End: Original strand, 23560017 - 23560101
Alignment:
Q  202 gtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatat 286  Q
    |||||||||||||||| || ||||||||||| |||| ||   || |  ||||||||||||||||||||||||||||| |||||||    
T  23560017 gtggtataaatgggacccacataatatattacattactttacactttccaattatttaaaccactcaactacattttctaaatat 23560101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 290
Target Start/End: Original strand, 5415180 - 5415267
Alignment:
Q  203 tggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcat 290  Q
    ||||||||||||||  || |||||||||||||||| ||   || || |||||||||||  |||||||||||||||| |||||||||||    
T  5415180 tggtataaatgggatccacataatatattatattactttacacttcccaattatttaactcactcaactacattttctaaatattcat 5415267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 202 - 286
Target Start/End: Original strand, 779897 - 779981
Alignment:
Q  202 gtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatat 286  Q
    |||||||||||||| |||| |||||| ||||||||| |||  |  | || ||||||||||||||||||||| ||||| |||||||    
T  779897 gtggtataaatgggtctcacataatacattatattacttcacatttttccattatttaaaccactcaactatattttctaaatat 779981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 250 - 297
Target Start/End: Complemental strand, 7907454 - 7907407
Alignment:
Q  250 caattatttaaaccactcaactacattttataaatattcatctcactc 297  Q
    ||||||||||||||||||||||||||||| ||||||| ||| ||||||    
T  7907454 caattatttaaaccactcaactacattttctaaatatccatatcactc 7907407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 249 - 296
Target Start/End: Original strand, 43355013 - 43355060
Alignment:
Q  249 tcaattatttaaaccactcaactacattttataaatattcatctcact 296  Q
    ||||||||||||||||||||| |||||||| ||||||||||| |||||    
T  43355013 tcaattatttaaaccactcaattacattttttaaatattcatatcact 43355060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 290
Target Start/End: Complemental strand, 46382091 - 46382024
Alignment:
Q  223 taatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcat 290  Q
    ||||||||||||||| |||  || ||||||||||||||||||||| |||| |||||  ||||||||||    
T  46382091 taatatattatattagttcacacttctcaattatttaaaccactccactatatttttcaaatattcat 46382024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 278
Target Start/End: Complemental strand, 52327101 - 52327028
Alignment:
Q  205 gtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacatttt 278  Q
    ||||||||||| | || ||||||| |||||||| |||  || | ||||||||||||| ||||||||||||||||    
T  52327101 gtataaatgggtcccacataatattttatattacttcacacttttcaattatttaaatcactcaactacatttt 52327028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 297
Target Start/End: Original strand, 34388850 - 34388898
Alignment:
Q  249 tcaattatttaaaccactcaactacattttataaatattcatctcactc 297  Q
    |||||||||||||||||| ||| ||||||| ||||||||||| ||||||    
T  34388850 tcaattatttaaaccactaaaccacattttctaaatattcatatcactc 34388898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 223 - 286
Target Start/End: Original strand, 55876020 - 55876083
Alignment:
Q  223 taatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatat 286  Q
    ||||||||||||||| |||  || |||||||||||||||| | ||||||||| ||| |||||||    
T  55876020 taatatattatattacttcacacttctcaattatttaaactattcaactacactttctaaatat 55876083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 283
Target Start/End: Original strand, 9268381 - 9268415
Alignment:
Q  249 tcaattatttaaaccactcaactacattttataaa 283  Q
    |||||||||||||||||||||||||||||| ||||    
T  9268381 tcaattatttaaaccactcaactacattttctaaa 9268415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 262
Target Start/End: Original strand, 43264456 - 43264517
Alignment:
Q  201 agtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaac 262  Q
    ||||||||||||||  ||||  ||||||||||||||| |||  || ||||||||||||||||    
T  43264456 agtggtataaatggacctcacctaatatattatattacttcacacttctcaattatttaaac 43264517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 290
Target Start/End: Original strand, 48262993 - 48263084
Alignment:
Q  203 tggtataaatgggactcatataatatattatattatttctt---acatctcaattatttaaacca-ctcaactacattttataaatattcat 290  Q
    ||||||||||| |||||| ||||||||||||| |||| |||   || | ||||||||||||| ||  | ||||||||||| |||||||||||    
T  48262993 tggtataaatgagactcacataatatattatactattactttacacttttcaattatttaaatcattttaactacattttctaaatattcat 48263084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 201 - 286
Target Start/End: Complemental strand, 40279061 - 40278976
Alignment:
Q  201 agtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatat 286  Q
    ||||||||||||||||| || |||||||||||||||| ||  ||| |  ||||||||||||||||||||||||||||| |||||||    
T  40279061 agtggtataaatgggacccacataatatattatattactttatactttccaattatttaaaccactcaactacattttctaaatat 40278976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 290
Target Start/End: Original strand, 11425490 - 11425577
Alignment:
Q  203 tggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcat 290  Q
    ||||||||||||||  || |||||||||||||||| ||   || || ||||||||||| | ||||||||||||||| |||||||||||    
T  11425490 tggtataaatgggatccacataatatattatattactttacacttcccaattatttaaccgactcaactacattttctaaatattcat 11425577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 250 - 290
Target Start/End: Complemental strand, 27594314 - 27594274
Alignment:
Q  250 caattatttaaaccactcaactacattttataaatattcat 290  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  27594314 caattatttaaaccactcaactacattttctaaatattcat 27594274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 250 - 290
Target Start/End: Original strand, 35158923 - 35158963
Alignment:
Q  250 caattatttaaaccactcaactacattttataaatattcat 290  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  35158923 caattatttaaaccactcaactacattttctaaatattcat 35158963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 286
Target Start/End: Complemental strand, 1156369 - 1156284
Alignment:
Q  201 agtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatat 286  Q
    ||||||||||||||| ||||  ||||| | |||||||||||  || || ||||||||||||||||| ||||| || || |||||||    
T  1156369 agtggtataaatgggtctcacgtaatacaatatattatttcacacttcccaattatttaaaccactaaactatatcttctaaatat 1156284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 287
Target Start/End: Original strand, 34954345 - 34954381
Alignment:
Q  251 aattatttaaaccactcaactacattttataaatatt 287  Q
    |||||||||||||||||||||||||||| ||||||||    
T  34954345 aattatttaaaccactcaactacattttttaaatatt 34954381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 278
Target Start/End: Complemental strand, 37479268 - 37479212
Alignment:
Q  222 ataatatattatattatttcttacatctcaattatttaaaccactcaactacatttt 278  Q
    |||||||||||||||| ||   || | ||||||||||||||||||||||||||||||    
T  37479268 ataatatattatattactttaaacttttcaattatttaaaccactcaactacatttt 37479212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 286
Target Start/End: Complemental strand, 17312945 - 17312863
Alignment:
Q  203 tggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatat 286  Q
    ||||||||||||| ||||  |||||  |||||||| |||  || | ||||||||||||||||||||||||||| || |||||||    
T  17312945 tggtataaatgggtctcag-taatactttatattacttcacacttttcaattatttaaaccactcaactacatcttctaaatat 17312863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 283
Target Start/End: Complemental strand, 9682408 - 9682374
Alignment:
Q  249 tcaattatttaaaccactcaactacattttataaa 283  Q
    |||||||||||||||||||||||||||||| ||||    
T  9682408 tcaattatttaaaccactcaactacattttctaaa 9682374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 286
Target Start/End: Complemental strand, 18227095 - 18227011
Alignment:
Q  202 gtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatat 286  Q
    |||||||||| ||| | || |||||| |||||||||  ||  || || |||||||||||||||  |||||||||||| |||||||    
T  18227095 gtggtataaacgggtcccacataatacattatattacctcacacttcccaattatttaaaccatccaactacattttttaaatat 18227011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 205 - 286
Target Start/End: Original strand, 7900161 - 7900242
Alignment:
Q  205 gtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatat 286  Q
    ||||||||||||| || |||||||||||||||| ||  ||| || ||||||||||||||||||||||||||||| |||||||    
T  7900161 gtataaatgggacccacataatatattatattactttatacttcccaattatttaaaccactcaactacattttctaaatat 7900242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 202 - 286
Target Start/End: Original strand, 1035747 - 1035831
Alignment:
Q  202 gtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatat 286  Q
    |||||||| ||||| | ||| ||||| | |||||||||||  || |||||||||||||||||||| ||||| ||||| |||||||    
T  1035747 gtggtatatatgggtcccatgtaatacaatatattatttcacacttctcaattatttaaaccactaaactatattttctaaatat 1035831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 226 - 286
Target Start/End: Complemental strand, 19322891 - 19322831
Alignment:
Q  226 tatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatat 286  Q
    |||||||||||| | | ||| |||||||||||||||||| ||||||||||||| |||||||    
T  19322891 tatattatattactacatacttctcaattatttaaaccattcaactacattttttaaatat 19322831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 202 - 286
Target Start/End: Original strand, 37457626 - 37457710
Alignment:
Q  202 gtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatat 286  Q
    |||||||||||||| | ||  ||||| | |||||||||||  || ||||||||||| |||||||||||||| ||||| |||||||    
T  37457626 gtggtataaatgggtcccacgtaatacaatatattatttcacacttctcaattattaaaaccactcaactatattttctaaatat 37457710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 249 - 290
Target Start/End: Complemental strand, 26707172 - 26707131
Alignment:
Q  249 tcaattatttaaaccactcaactacattttataaatattcat 290  Q
    |||||||||||||||| ||||||||||||| |||||||||||    
T  26707172 tcaattatttaaaccattcaactacattttctaaatattcat 26707131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 290
Target Start/End: Original strand, 51613256 - 51613345
Alignment:
Q  201 agtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcat 290  Q
    ||||||||||||||  | || ||||||  |||||||| |||  || |  ||||||||||||||||||||||||||||| |||||| ||||    
T  51613256 agtggtataaatggatcccacataataatttatattacttcacactttccaattatttaaaccactcaactacattttctaaatactcat 51613345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 290
Target Start/End: Complemental strand, 10574462 - 10574370
Alignment:
Q  198 ataagtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcat 290  Q
    |||||||||||||||| |   || |||||||| ||||||| |||  |  ||||||||||||||| ||||||| || ||||| |||||||||||    
T  10574462 ataagtggtataaatgagttccacataatataatatattacttcacatttctcaattatttaaatcactcaattatattttttaaatattcat 10574370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 286
Target Start/End: Complemental strand, 19993471 - 19993387
Alignment:
Q  202 gtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatat 286  Q
    |||||||| ||||||  || |||||||||||||||| ||   || | | |||||||||||||||||||||| ||||| |||||||    
T  19993471 gtggtatagatgggatccacataatatattatattactttacactttttaattatttaaaccactcaactatattttctaaatat 19993387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 286
Target Start/End: Complemental strand, 50428573 - 50428489
Alignment:
Q  202 gtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatat 286  Q
    |||||||||||||  ||||   |||| ||||||||| |||  || ||||||||||||||| |||||||||| ||||| |||||||    
T  50428573 gtggtataaatggatctcacgcaataaattatattacttcacacttctcaattatttaaatcactcaactatattttctaaatat 50428489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 286
Target Start/End: Original strand, 43496401 - 43496484
Alignment:
Q  203 tggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatat 286  Q
    ||||||||| ||| | || |||||| |||||||||  ||  || |||||||||||||||| | ||||||||||||| |||||||    
T  43496401 tggtataaacgggtcccacataatacattatattacctcacacttctcaattatttaaactattcaactacattttttaaatat 43496484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 283
Target Start/End: Complemental strand, 46823680 - 46823646
Alignment:
Q  249 tcaattatttaaaccactcaactacattttataaa 283  Q
    |||||||||||||||||||||||||||||| ||||    
T  46823680 tcaattatttaaaccactcaactacattttctaaa 46823646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 290
Target Start/End: Original strand, 47394377 - 47394462
Alignment:
Q  205 gtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcat 290  Q
    |||||||||||   || |||||| ||||||||| |||  || || ||||||||||||| ||||  ||||||||| |||||||||||    
T  47394377 gtataaatgggttccacataatacattatattacttcacacttcccaattatttaaactactcgtctacattttttaaatattcat 47394462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 286
Target Start/End: Complemental strand, 23571102 - 23571018
Alignment:
Q  202 gtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatat 286  Q
    |||||||||||||| | || |||||| ||||||||| |||  |  | || ||||||||||| ||||||||| ||||| |||||||    
T  23571102 gtggtataaatgggtcccacataatacattatattacttcacatttttccattatttaaacaactcaactatattttttaaatat 23571018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 202 - 290
Target Start/End: Complemental strand, 2844231 - 2844143
Alignment:
Q  202 gtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcat 290  Q
    |||||||||||| |  ||| |||||| ||||||||| |||  || || ||||||||||||||||||||||||||||| |||||||||||    
T  2844231 gtggtataaatgagtttcacataatacattatattacttcacacttcccaattatttaaaccactcaactacattttttaaatattcat 2844143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 223 - 297
Target Start/End: Complemental strand, 10682582 - 10682508
Alignment:
Q  223 taatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcatctcactc 297  Q
    ||||||||||||||| |||  || ||||||||||||||||||||||||||||||||  |||||| ||| ||||||    
T  10682582 taatatattatattacttcacacttctcaattatttaaaccactcaactacatttttcaaatatccatgtcactc 10682508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 283
Target Start/End: Original strand, 13685397 - 13685478
Alignment:
Q  202 gtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaa 283  Q
    |||||||||||||| | || |||||| ||||||||||||  ||| | ||||||||||||| |||||||||| ||||| ||||    
T  13685397 gtggtataaatgggtcccacataatacattatattattttatacttttcaattatttaaaacactcaactatattttctaaa 13685478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 272
Target Start/End: Original strand, 30775353 - 30775423
Alignment:
Q  202 gtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaacta 272  Q
    |||||||||||||| |  | |||||| ||||||||| |||  || | ||||||||||||||||||||||||    
T  30775353 gtggtataaatgggtcctacataatacattatattacttcacacttttcaattatttaaaccactcaacta 30775423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 290
Target Start/End: Original strand, 19763591 - 19763631
Alignment:
Q  250 caattatttaaaccactcaactacattttataaatattcat 290  Q
    ||||||||||||||||| || |||||||| |||||||||||    
T  19763591 caattatttaaaccacttaattacattttctaaatattcat 19763631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 297
Target Start/End: Original strand, 19789280 - 19789328
Alignment:
Q  249 tcaattatttaaaccactcaactacattttataaatattcatctcactc 297  Q
    ||||||||||||| |||| || |||||||| ||||||||||| ||||||    
T  19789280 tcaattatttaaatcacttaattacattttctaaatattcatatcactc 19789328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 206 - 297
Target Start/End: Original strand, 29681415 - 29681506
Alignment:
Q  206 tataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcatctcactc 297  Q
    |||||||| |||||| |||||||||||||||||||  || ||   |||||||| ||||||| ||||||||||||||||||| ||| ||||||    
T  29681415 tataaatgagactcacataatatattatattattttatatattcaaattatttgaaccacttaactacattttataaatatccatatcactc 29681506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 203 - 290
Target Start/End: Complemental strand, 44396482 - 44396395
Alignment:
Q  203 tggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcat 290  Q
    ||||||||||||||  || |||||||||||||||| ||   || || ||||||||||| ||||||||||||||||| |||||||||||    
T  44396482 tggtataaatgggatccacataatatattatattactttacacttcccaattatttaacccactcaactacattttctaaatattcat 44396395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 203 - 287
Target Start/End: Complemental strand, 43692645 - 43692561
Alignment:
Q  203 tggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatatt 287  Q
    |||||||||| || | || |||||| |||||||||||||  || |||||||||||||||||||||| ||| ||||| ||||||||    
T  43692645 tggtataaataggtcccacataatacattatattatttcacacttctcaattatttaaaccactcatctaaattttttaaatatt 43692561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 203 - 287
Target Start/End: Complemental strand, 49081331 - 49081247
Alignment:
Q  203 tggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatatt 287  Q
    ||||||||||||| ||||||||||| ||||||||||||  ||  | ||||||||||||| || ||| ||||||||| ||||||||    
T  49081331 tggtataaatgggtctcatataatacattatattattttatatttttcaattatttaaatcattcatctacattttctaaatatt 49081247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 223 - 290
Target Start/End: Complemental strand, 43598900 - 43598833
Alignment:
Q  223 taatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcat 290  Q
    ||||||||||||||| |||  || |||||||||||||||||||||||||| |||||  ||||||||||    
T  43598900 taatatattatattagttcacacttctcaattatttaaaccactcaactatatttttcaaatattcat 43598833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 278
Target Start/End: Complemental strand, 48252980 - 48252907
Alignment:
Q  205 gtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacatttt 278  Q
    ||||||||||| | |||||||||| |||||||| |||  || |  |||||||||||||||||||||||||||||    
T  48252980 gtataaatgggtcccatataatattttatattacttcacactttccaattatttaaaccactcaactacatttt 48252907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 230 - 290
Target Start/End: Complemental strand, 36725858 - 36725798
Alignment:
Q  230 ttatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcat 290  Q
    |||||||||||   || |||||||||||||||||||||||||||| ||| |||||||||||    
T  36725858 ttatattattttacacttctcaattatttaaaccactcaactacaatttctaaatattcat 36725798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 290
Target Start/End: Original strand, 36118058 - 36118124
Alignment:
Q  224 aatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcat 290  Q
    |||| ||||||||||||   || |||| |||||||||||||||||| |||||||| |||||||||||    
T  36118058 aatacattatattatttaacacttctctattatttaaaccactcaattacattttctaaatattcat 36118124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 287
Target Start/End: Original strand, 38346409 - 38346494
Alignment:
Q  203 tggtataaatgggactcatataatatatta-tattatttcttacatctcaattatttaaaccactcaactacattttataaatatt 287  Q
    ||||||||||||  | |||||||||||| | ||||| ||| ||  | | |||||||||||||||||||||||||||| ||||||||    
T  38346409 tggtataaatggaccccatataatatataaatattacttcatattttttaattatttaaaccactcaactacattttttaaatatt 38346494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 286
Target Start/End: Original strand, 49080771 - 49080851
Alignment:
Q  205 gtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatat 286  Q
    ||||||||||| || | |||||||||||||||| |||  || | ||||||||||||||||||  |||||||||| |||||||    
T  49080771 gtataaatgggtcttacataatatattatattacttcacacttttcaattatttaaaccact-tactacattttttaaatat 49080851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 223 - 290
Target Start/End: Original strand, 12879278 - 12879345
Alignment:
Q  223 taatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcat 290  Q
    |||||| |||||||| |||  || |||||||||||||||| || |||||| ||||| |||||||||||    
T  12879278 taatattttatattacttcacacttctcaattatttaaacaacacaactatattttctaaatattcat 12879345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 286
Target Start/End: Original strand, 8404797 - 8404833
Alignment:
Q  250 caattatttaaaccactcaactacattttataaatat 286  Q
    |||||||||||||||||||| |||||||| |||||||    
T  8404797 caattatttaaaccactcaattacattttttaaatat 8404833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 286
Target Start/End: Complemental strand, 37626955 - 37626915
Alignment:
Q  246 atctcaattatttaaaccactcaactacattttataaatat 286  Q
    ||||||||||||||||| ||||||||| ||||| |||||||    
T  37626955 atctcaattatttaaacaactcaactatattttttaaatat 37626915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 224 - 290
Target Start/End: Original strand, 14593889 - 14593955
Alignment:
Q  224 aatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcat 290  Q
    |||||||||||||| |||  | ||||||||||||||||||| |||| ||||||||||||||||||||    
T  14593889 aatatattatattacttcacaaatctcaattatttaaaccattcaattacattttataaatattcat 14593955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 202 - 297
Target Start/End: Original strand, 39060199 - 39060294
Alignment:
Q  202 gtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcatctcactc 297  Q
    |||||||||||||| | || |||||| ||||||||| |||  || | || ||||||||||||||||||||| ||||| ||||||| ||| ||||||    
T  39060199 gtggtataaatgggtcccacataatacattatattacttcacacttttcgattatttaaaccactcaactatattttctaaatatccatatcactc 39060294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 249 - 297
Target Start/End: Original strand, 4925116 - 4925164
Alignment:
Q  249 tcaattatttaaaccactcaactacattttataaatattcatctcactc 297  Q
    |||||||||||||||||||||||||||||| ||||||| ||| ||||||    
T  4925116 tcaattatttaaaccactcaactacattttttaaatatccatatcactc 4925164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 286
Target Start/End: Complemental strand, 34769664 - 34769580
Alignment:
Q  202 gtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatat 286  Q
    |||||||||| ||| | || |||||| |||||||||  ||  || || ||||||||||||||| ||||||||||||| |||||||    
T  34769664 gtggtataaacgggtcccacataatacattatattacctcacacttcccaattatttaaaccattcaactacattttttaaatat 34769580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 286
Target Start/End: Complemental strand, 34383771 - 34383710
Alignment:
Q  225 atatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatat 286  Q
    ||||||||||||| ||   || |||||||||||||||||||  ||||||||||| |||||||    
T  34383771 atatattatattactttacacttctcaattatttaaaccacaaaactacattttctaaatat 34383710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 290
Target Start/End: Complemental strand, 35470373 - 35470332
Alignment:
Q  249 tcaattatttaaaccactcaactacattttataaatattcat 290  Q
    |||||||||||||| ||||||||| ||||| |||||||||||    
T  35470373 tcaattatttaaactactcaactatattttctaaatattcat 35470332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 286
Target Start/End: Complemental strand, 9959364 - 9959328
Alignment:
Q  250 caattatttaaaccactcaactacattttataaatat 286  Q
    ||||||||||||| ||||||||||||||| |||||||    
T  9959364 caattatttaaactactcaactacattttctaaatat 9959328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 267
Target Start/End: Original strand, 13803 - 13868
Alignment:
Q  202 gtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactc 267  Q
    |||||||||||||| | || |||||||| ||||||||||   || || ||||||||||||||||||    
T  13803 gtggtataaatgggtcccacataatataatatattattttacacttcccaattatttaaaccactc 13868  T

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Target: scaffold0110; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 267
Target Start/End: Original strand, 21540 - 21605
Alignment:
Q  202 gtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactc 267  Q
    |||||||||||||| | || |||||||| ||||||||||   || || ||||||||||||||||||    
T  21540 gtggtataaatgggtcccacataatataatatattattttacacttcccaattatttaaaccactc 21605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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