View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5055_low_14 (Length: 267)

Name: NF5055_low_14
Description: NF5055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5055_low_14
NF5055_low_14
[»] chr7 (2 HSPs)
chr7 (36-109)||(16756443-16756516)
chr7 (212-252)||(16756272-16756312)
[»] chr1 (5 HSPs)
chr1 (1-105)||(52077608-52077704)
chr1 (13-109)||(3616348-3616436)
chr1 (1-75)||(12666923-12666996)
chr1 (211-250)||(52077842-52077881)
chr1 (211-252)||(3616566-3616607)


Alignment Details
Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 36 - 109
Target Start/End: Complemental strand, 16756516 - 16756443
Alignment:
Q  36 atgaatttatgatggtggtgtgtgatgaatttatgaatttgggagaagaagatatgaagattcctggagatgaa 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  16756516 atgaatttatgatggtggtgtgtgatgaatttatgaatttgggagaagaagatatgaagattcatggagatgaa 16756443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 16756312 - 16756272
Alignment:
Q  212 tgggtttattattaatagaaatcaatggtgatgatgatgat 252  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  16756312 tgggtttattattaatagaaatcaatggtgatgatgatgat 16756272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 52077608 - 52077704
Alignment:
Q  1 ttatgaatttcgttttcagtgatgatggtgtagggatgaatttatgatggtggtgtgtgatgaatttatgaatttgggagaagaagatatgaagattcct 100  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||    
T  52077608 ttatgaatttctttttcagtgatggtggtgtagggatgaatttatgatggtggtgtgtg--------atgaatttgggagaagaagatatgaagattcct 52077699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 13 - 109
Target Start/End: Original strand, 3616348 - 3616436
Alignment:
Q  13 ttttcagtgatgatggtgtagggatgaatttatgatggtggtgtgtgatgaatttatgaatttgggagaagaagatatgaagattcctggagatgaa 109  Q
    |||||||||||| ||||||| ||||||||||||||||| ||||| ||||||        ||||||||||||||||||||||||||||||||||||||    
T  3616348 ttttcagtgatggtggtgtatggatgaatttatgatggcggtgtctgatga--------atttgggagaagaagatatgaagattcctggagatgaa 3616436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 12666923 - 12666996
Alignment:
Q  1 ttatgaatttcgttttcagtgatgatggtgtagggatgaatttatgatggtggtgtgtgatgaatttatgaattt 75  Q
    ||||||||||| ||||| |||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  12666923 ttatgaatttctttttctgtgatggtggtgtagtgatgaatttatgatggtggtgtgtgatg-atttatgaattt 12666996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 250
Target Start/End: Original strand, 52077842 - 52077881
Alignment:
Q  211 ctgggtttattattaatagaaatcaatggtgatgatgatg 250  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  52077842 ctgggtttattattaatagaaatcaatggtgatgatgatg 52077881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 252
Target Start/End: Original strand, 3616566 - 3616607
Alignment:
Q  211 ctgggtttattattaatagaaatcaatggtgatgatgatgat 252  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  3616566 ctgggtttattattaatagaaatcaatggtgatcatgatgat 3616607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University