View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5055_low_16 (Length: 255)

Name: NF5055_low_16
Description: NF5055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5055_low_16
NF5055_low_16
[»] chr4 (3 HSPs)
chr4 (6-252)||(18460781-18461028)
chr4 (111-153)||(16572984-16573026)
chr4 (102-136)||(24275113-24275147)
[»] chr1 (5 HSPs)
chr1 (101-177)||(28020189-28020265)
chr1 (102-166)||(11915770-11915834)
chr1 (108-181)||(37960283-37960356)
chr1 (100-153)||(2066074-2066127)
chr1 (108-136)||(48854360-48854388)
[»] chr5 (4 HSPs)
chr5 (100-161)||(41404920-41404981)
chr5 (101-136)||(20984704-20984739)
chr5 (101-136)||(43399902-43399937)
chr5 (101-137)||(8942045-8942081)
[»] chr3 (2 HSPs)
chr3 (101-177)||(17263655-17263730)
chr3 (116-177)||(20452160-20452221)
[»] chr7 (7 HSPs)
chr7 (103-178)||(5643751-5643826)
chr7 (103-178)||(5649603-5649678)
chr7 (108-161)||(25256044-25256097)
chr7 (110-164)||(9895165-9895219)
chr7 (99-136)||(35124056-35124093)
chr7 (102-154)||(21304560-21304612)
chr7 (108-162)||(15126082-15126135)
[»] chr6 (6 HSPs)
chr6 (98-164)||(10587479-10587545)
chr6 (102-177)||(26198541-26198616)
chr6 (102-164)||(25329244-25329306)
chr6 (103-164)||(6059154-6059215)
chr6 (113-174)||(33024009-33024070)
chr6 (101-162)||(3731331-3731393)
[»] chr8 (1 HSPs)
chr8 (116-157)||(10831555-10831596)
[»] chr2 (1 HSPs)
chr2 (101-142)||(42562924-42562965)


Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 6 - 252
Target Start/End: Complemental strand, 18461028 - 18460781
Alignment:
Q  6 aggagcacagagtaacgcatacatgtctgtgtgtgtatatatat--ttaaagaaatcattcaactcctacatacctggttaaatttccaataccatattt 103  Q
    |||| |||| ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  18461028 aggatcacaaagtaacgcatacatgtctgtgtgtgtatatatatatttaaagaaatcattcaactcctacatacctggttaaatttccaataccataatt 18460929  T
Q  104 tttcttaacaaacaaaaatgatatatattaacactgacacgcaatctcttcagcacaaggtatgtcaaagagactacggaattttttccaatatcatatt 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||    
T  18460928 tttcttaacaaacaaaaatgatatatattaacactgacacgcaatctcttcagca-aaggtatgccaaagagactacggaattttttccaatattatatt 18460830  T
Q  204 aaagtatgtataccttctccaacttgatccaactcaacttgagtcttat 252  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  18460829 aaagtatgtataccttctccaacttgatccaactcaacttgagtcttat 18460781  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 153
Target Start/End: Complemental strand, 16573026 - 16572984
Alignment:
Q  111 acaaacaaaaatgatatatattaacactgacacgcaatctctt 153  Q
    |||| ||||||||||||||||||||||||| | ||||||||||    
T  16573026 acaagcaaaaatgatatatattaacactgataagcaatctctt 16572984  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 136
Target Start/End: Complemental strand, 24275147 - 24275113
Alignment:
Q  102 tttttcttaacaaacaaaaatgatatatattaaca 136  Q
    ||||| |||||||||||||||||||||||||||||    
T  24275147 ttttttttaacaaacaaaaatgatatatattaaca 24275113  T

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Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 101 - 177
Target Start/End: Original strand, 28020189 - 28020265
Alignment:
Q  101 ttttttcttaacaaacaaaaatgatatatattaacactgacacgcaatctcttcagcacaaggtatgtcaaagagac 177  Q
    |||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |  |||||||||    
T  28020189 tttttttttaacaagcaaaaatgatatatattaacactgacaagcaatctcttcagcacaaggtgtaccaaagagac 28020265  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 102 - 166
Target Start/End: Original strand, 11915770 - 11915834
Alignment:
Q  102 tttttcttaacaaacaaaaatgatatatattaacactgacacgcaatctcttcagcacaaggtat 166  Q
    ||||| ||||||| ||||||||||||||||||||||||||| ||||||||||  |||||||||||    
T  11915770 ttttttttaacaagcaaaaatgatatatattaacactgacaagcaatctctttggcacaaggtat 11915834  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 108 - 181
Target Start/End: Complemental strand, 37960356 - 37960283
Alignment:
Q  108 ttaacaaacaaaaatgatatatattaacactgacacgcaatctcttcagcacaaggtatgtcaaagagactacg 181  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||||| || ||||| |   ||||||||||||    
T  37960356 ttaacaagcaaaaatgatatatattaacactgacacgcactctcttcaacataaggtgtactaaagagactacg 37960283  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 153
Target Start/End: Complemental strand, 2066127 - 2066074
Alignment:
Q  100 attttttcttaacaaacaaaaatgatatatattaacactgacacgcaatctctt 153  Q
    ||||||| ||||||| ||||||||||||||||||||||| ||| ||||||||||    
T  2066127 atttttttttaacaagcaaaaatgatatatattaacactaacatgcaatctctt 2066074  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 136
Target Start/End: Original strand, 48854360 - 48854388
Alignment:
Q  108 ttaacaaacaaaaatgatatatattaaca 136  Q
    |||||||||||||||||||||||||||||    
T  48854360 ttaacaaacaaaaatgatatatattaaca 48854388  T

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Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 100 - 161
Target Start/End: Complemental strand, 41404981 - 41404920
Alignment:
Q  100 attttttcttaacaaacaaaaatgatatatattaacactgacacgcaatctcttcagcacaa 161  Q
    ||||||| ||||||| |||||||||||||||||||||||||||  |||||||||||||||||    
T  41404981 atttttttttaacaagcaaaaatgatatatattaacactgacaaacaatctcttcagcacaa 41404920  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 101 - 136
Target Start/End: Original strand, 20984704 - 20984739
Alignment:
Q  101 ttttttcttaacaaacaaaaatgatatatattaaca 136  Q
    |||||| |||||||||||||||||||||||||||||    
T  20984704 tttttttttaacaaacaaaaatgatatatattaaca 20984739  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 101 - 136
Target Start/End: Original strand, 43399902 - 43399937
Alignment:
Q  101 ttttttcttaacaaacaaaaatgatatatattaaca 136  Q
    |||||| |||||||||||||||||||||||||||||    
T  43399902 tttttttttaacaaacaaaaatgatatatattaaca 43399937  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 137
Target Start/End: Complemental strand, 8942081 - 8942045
Alignment:
Q  101 ttttttcttaacaaacaaaaatgatatatattaacac 137  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  8942081 tttttttttaacaaacaaaaatgaaatatattaacac 8942045  T

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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 101 - 177
Target Start/End: Complemental strand, 17263730 - 17263655
Alignment:
Q  101 ttttttcttaacaaacaaaaatgatatatattaacactgacacgcaatctcttcagcacaaggtatgtcaaagagac 177  Q
    |||||| ||||||| |||||||||||| ||| |||||||||| ||||||||||||||||||||| | ||||||||||    
T  17263730 tttttttttaacaagcaaaaatgatatgtat-aacactgacaagcaatctcttcagcacaaggtgtatcaaagagac 17263655  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 116 - 177
Target Start/End: Original strand, 20452160 - 20452221
Alignment:
Q  116 caaaaatgatatatattaacactgacacgcaatctcttcagcacaaggtatgtcaaagagac 177  Q
    |||||||  |||||||||||||||||||  ||||||||||||||||||| |  |||||||||    
T  20452160 caaaaatcgtatatattaacactgacacaaaatctcttcagcacaaggtgtaccaaagagac 20452221  T

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Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 103 - 178
Target Start/End: Original strand, 5643751 - 5643826
Alignment:
Q  103 ttttcttaacaaacaaaaatgatatatattaacactgacacgcaatctcttcagcacaaggtatgtcaaagagact 178  Q
    |||| ||||||| ||||||||||||||||||| |||||||| |||||||||||||| ||||| |  ||||||||||    
T  5643751 tttttttaacaagcaaaaatgatatatattaatactgacacacaatctcttcagcataaggtgtaccaaagagact 5643826  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 103 - 178
Target Start/End: Original strand, 5649603 - 5649678
Alignment:
Q  103 ttttcttaacaaacaaaaatgatatatattaacactgacacgcaatctcttcagcacaaggtatgtcaaagagact 178  Q
    |||| ||||||| ||||||||||||||||||| |||||||| |||||||||||||| ||||| |  ||||||||||    
T  5649603 tttttttaacaagcaaaaatgatatatattaatactgacacacaatctcttcagcataaggtgtaccaaagagact 5649678  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 108 - 161
Target Start/End: Complemental strand, 25256097 - 25256044
Alignment:
Q  108 ttaacaaacaaaaatgatatatattaacactgacacgcaatctcttcagcacaa 161  Q
    ||||||| |||||||||||| |||||||||||||| |||| |||||||||||||    
T  25256097 ttaacaagcaaaaatgatatgtattaacactgacaagcaacctcttcagcacaa 25256044  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 110 - 164
Target Start/End: Original strand, 9895165 - 9895219
Alignment:
Q  110 aacaaacaaaaatgatatatattaacactgacacgcaatctcttcagcacaaggt 164  Q
    ||||| ||||||||||||||||||||||||||| |||||||  |||| |||||||    
T  9895165 aacaagcaaaaatgatatatattaacactgacaagcaatcttctcagtacaaggt 9895219  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 136
Target Start/End: Original strand, 35124056 - 35124093
Alignment:
Q  99 tattttttcttaacaaacaaaaatgatatatattaaca 136  Q
    |||||||| |||||||||||||||||||||||||||||    
T  35124056 tatttttttttaacaaacaaaaatgatatatattaaca 35124093  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 154
Target Start/End: Original strand, 21304560 - 21304612
Alignment:
Q  102 tttttcttaacaaacaaaaatgatatatattaacactgacacgcaatctcttc 154  Q
    ||||| |||||||| |||||||||||||||||| || ||||| ||||||||||    
T  21304560 ttttttttaacaaaaaaaaatgatatatattaatacagacacacaatctcttc 21304612  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 162
Target Start/End: Complemental strand, 15126135 - 15126082
Alignment:
Q  108 ttaacaaacaaaaatgatatatattaacactgacacgcaatctcttcagcacaag 162  Q
    |||||||| |||||||||||||||| ||| |||||  ||||||||||||||||||    
T  15126135 ttaacaaa-aaaaatgatatatattcacagtgacaaacaatctcttcagcacaag 15126082  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 98 - 164
Target Start/End: Complemental strand, 10587545 - 10587479
Alignment:
Q  98 atattttttcttaacaaacaaaaatgatatatattaacactgacacgcaatctcttcagcacaaggt 164  Q
    ||||||||| ||||||| | ||||||||||||||||||| ||||| |||| ||||||||||||||||    
T  10587545 atatttttttttaacaagcgaaaatgatatatattaacattgacaagcaacctcttcagcacaaggt 10587479  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 102 - 177
Target Start/End: Complemental strand, 26198616 - 26198541
Alignment:
Q  102 tttttcttaacaaacaaaaatgatatatattaacactgacacgcaatctcttcagcacaaggtatgtcaaagagac 177  Q
    ||||| ||||||| ||||||||||||||||||| | ||||| ||||||||||| ||| ||||| | ||||||||||    
T  26198616 ttttttttaacaagcaaaaatgatatatattaatattgacaagcaatctcttcggcataaggtgtatcaaagagac 26198541  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 102 - 164
Target Start/End: Original strand, 25329244 - 25329306
Alignment:
Q  102 tttttcttaacaaacaaaaatgatatatattaacactgacacgcaatctcttcagcacaaggt 164  Q
    ||||| ||||||| ||||||||||||||||||| | ||||| ||||||||||| ||| |||||    
T  25329244 ttttttttaacaagcaaaaatgatatatattaatattgacaagcaatctcttcggcataaggt 25329306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 103 - 164
Target Start/End: Complemental strand, 6059215 - 6059154
Alignment:
Q  103 ttttcttaacaaacaaaaatgatatatattaacactgacacgcaatctcttcagcacaaggt 164  Q
    |||| ||||||| |||||||||||||||||| |||||| | | ||||||||||| |||||||    
T  6059215 tttttttaacaagcaaaaatgatatatattagcactgataagaaatctcttcagtacaaggt 6059154  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 113 - 174
Target Start/End: Original strand, 33024009 - 33024070
Alignment:
Q  113 aaacaaaaatgatatatattaacactgacacgcaatctcttcagcacaaggtatgtcaaaga 174  Q
    |||||||||||||||||||||||| ||||| | |||||||| |||||||  ||| |||||||    
T  33024009 aaacaaaaatgatatatattaacaatgacaagtaatctcttgagcacaaattatatcaaaga 33024070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 162
Target Start/End: Original strand, 3731331 - 3731393
Alignment:
Q  101 ttttttcttaacaaacaaaaatgatatatattaacactgac-acgcaatctcttcagcacaag 162  Q
    |||||| ||||||||| |||||||  ||||||||||||||| |||||||  ||||||||||||    
T  3731331 tttttttttaacaaaccaaaatgaattatattaacactgacaacgcaattgcttcagcacaag 3731393  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 116 - 157
Target Start/End: Complemental strand, 10831596 - 10831555
Alignment:
Q  116 caaaaatgatatatattaacactgacacgcaatctcttcagc 157  Q
    |||||||||||||||||||||||||||  |||||||||||||    
T  10831596 caaaaatgatatatattaacactgacaaacaatctcttcagc 10831555  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 101 - 142
Target Start/End: Original strand, 42562924 - 42562965
Alignment:
Q  101 ttttttcttaacaaacaaaaatgatatatattaacactgaca 142  Q
    |||||| ||||||||||||||||| |||||||||||| ||||    
T  42562924 tttttttttaacaaacaaaaatgaaatatattaacaccgaca 42562965  T

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