View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5055_low_18 (Length: 251)
Name: NF5055_low_18
Description: NF5055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5055_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 88 - 237
Target Start/End: Complemental strand, 52077572 - 52077423
Alignment:
| Q |
88 |
ctggttccttttagaaacaagatttgtatttacgattaacccataaaaaatattattattaattctggctgttattaactattgttcatcgatctacatc |
187 |
Q |
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| T |
52077572 |
ctggttccttttagaaacaagatttgtatttacgattaacccataaaaaatattattattaattctggctgttattaactattgttcatcgatctacaac |
52077473 |
T |
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| Q |
188 |
cctttcacaaaaccaattcatgttttctctgtcaacaaacagtatataat |
237 |
Q |
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| T |
52077472 |
cctttcacaaaaccaattcatgttttctctctcaacaaacagtatataat |
52077423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 89 - 237
Target Start/End: Complemental strand, 3616287 - 3616138
Alignment:
| Q |
89 |
tggttccttttagaaacaagatttgtatttacgattaacccataaaaaatattattattaattctggctgttattaactattgttcatcgatctacatcc |
188 |
Q |
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||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |
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| T |
3616287 |
tggttccttttagaaacaagattagtatttacaattaacccataaaaaatattattattaattctggttgttattaactattgttcatcgatctacaacc |
3616188 |
T |
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| Q |
189 |
ctttcac-aaaaccaattcatgttttctctgtcaacaaacagtatataat |
237 |
Q |
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||||||| |||||||||||||||||||||| ||||||||||||| ||||| |
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| T |
3616187 |
ctttcacaaaaaccaattcatgttttctctctcaacaaacagtacataat |
3616138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 89 - 237
Target Start/End: Original strand, 16756567 - 16756715
Alignment:
| Q |
89 |
tggttccttttagaaacaagatttgtatttacgattaacccataaaaaatattattattaattctggctgttattaactattgttcatcgatctacatcc |
188 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| || |
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| T |
16756567 |
tggttccttttagaatcaagatttgtatttacgattaacccataaaaaatattattattaattttggttgttattaactattgttcatcgatctacaacc |
16756666 |
T |
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| Q |
189 |
ctttcacaaaaccaattcatgttttctctgtcaacaaacagtatataat |
237 |
Q |
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| T |
16756667 |
ctttcacaaaaccaattcatgttttctctctcaacaaacagtatataat |
16756715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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