View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5055_low_19 (Length: 238)
Name: NF5055_low_19
Description: NF5055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5055_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 98; Significance: 2e-48; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 13410884 - 13410985
Alignment:
| Q |
1 |
tgttccactgccaagattaatttatttatttttcagtagatttttcacttgcagtggaactcaattattgatttaattatattatactggtatacaatta |
100 |
Q |
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| T |
13410884 |
tgttccactgccaagattaattaatttatttttcagtagatttttcacttgcagtggaactcaattattgatttaattatattatactggtatacaatta |
13410983 |
T |
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| Q |
101 |
tt |
102 |
Q |
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|| |
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| T |
13410984 |
tt |
13410985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 99 - 224
Target Start/End: Original strand, 13411012 - 13411137
Alignment:
| Q |
99 |
tattgatggcgcttatgaagggtcatcttaataagtgtcctgaagatattttaaaaattgaaaagtagaaaaaattgatgagttttatatnnnnnnnntt |
198 |
Q |
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| T |
13411012 |
tattgatggcgtttatgaagggtcatcttaataagtgttctgaagatattttaaaaattgaaaagtagaaaaaattgatgagttttatataaaaaaagtt |
13411111 |
T |
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| Q |
199 |
gctttttaaatttaatgtgttgaatg |
224 |
Q |
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| T |
13411112 |
gttttttaaatttaatgtgttgaatg |
13411137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 13496329 - 13496409
Alignment:
| Q |
1 |
tgttccactgccaagattaatttatttatttttcagtagatttttcacttg--cagtggaactcaattattgatttaatta |
79 |
Q |
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| T |
13496329 |
tgttccactatcaagatttatttatttattttttcgtagaattttcactcggttagtggaactcaatcattgatttaatta |
13496409 |
T |
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